Gene: Sopen10g031530

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen10g031530
  • Transcript Identifier Sopen10g031530.1
  • Gene Type Coding gene
  • Location Spenn-ch10 : 79071435-79081191 : negative

Gene Family Information

  • ID HOM05D002640
  • #Genes/#Species 260/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen10g031530.1

Descriptions

  • Description Related to yeast Spt6 protein, which functions as part of a protein complex in transcription initiation and also plays a role in chromatin structure / assembly. | global transcription factor group B1 (GTB1) | FUNCTIONS IN: transcription elongation regulator activity, hydrolase activity, acting on ester bonds, RNA binding | INVOLVED IN: chromatin assembly or disassembly, transcription initiation | LOCATED IN: cellular_component unknown | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Resolvase, RNase H-like fold , Nucleic acid-binding, OB-fold , Nucleic acid-binding, OB-fold-like , Ribosomal protein S1, RNA-binding domain , Transcription elongation factor Spt6 | BEST Arabidopsis thaliana protein match is: Transcription elongation factor Spt6 .
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0032968
IEA
InterPropositive regulation of transcription elongation from RNA polymerase II promoter
GO:0006139
IEA
InterPronucleobase-containing compound metabolic process
GO:0009793
ISO
PLAZA Integrative Orthologyembryo development ending in seed dormancy AT1G63210

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
InterProDNA binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G65440

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT1G65440
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT1G65440

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR017072 Transcription elongation factor Spt6
IPR012340 Nucleic acid-binding, OB-fold
IPR010994 RuvA domain 2-like
IPR035019 Spt6, SH2 domain, N terminus
IPR022967 RNA-binding domain, S1
IPR006641 YqgF/RNase H-like domain
IPR041692 HHH domain 9
IPR028083 Spt6 acidic, N-terminal domain
IPR012337 Ribonuclease H-like superfamily
IPR035420 Spt6, SH2 domain
IPR035018 Spt6, SH2 domain, C terminus
IPR023319 Tex-like protein, HTH domain superfamily
IPR023323 Tex-like domain superfamily
IPR042066 Spt6, Death-like domain
IPR032706 Transcription elongation factor Spt6, helix-hairpin-helix motif
IPR036860 SH2 domain superfamily
IPR037027 YqgF/RNase H-like domain superfamily
IPR028231 Transcription elongation factor Spt6, YqgF domain
IPR028088 Helix-turn-helix DNA-binding domain of Spt6
Mapman id Description
15.3.5.4.1 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription elongation.SPT6-IWS1 transcription elongation complex.component SPT6