Gene: PGR142G0829
General Information
Structural Information
- Species Punica granatum
- Gene Identifier PGR142G0829
- Transcript Identifier PGR142G0829.01
- Gene Type Coding gene
- Location NC_045128.1 : 40143079-40151067 : negative
Gene Family Information
- ID HOM05D002640
- #Genes/#Species 260/99
- Phylogenetic origin
- ID ORTHO05D003231
- #Genes/#Species 236/99
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- pid XP_031382982.1
- name LOC116197097
- name XM_031527122.1
- id gene-LOC116197097
- uniprot A0A6P8CFY9
Descriptions
- product transcription elongation factor SPT6 homolog
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0032968 | IEA | GOA Database | positive regulation of transcription elongation from RNA polymerase II promoter | |
| GO:0032968 | IEA | InterPro | positive regulation of transcription elongation from RNA polymerase II promoter | |
| GO:0006139 | IEA | GOA Database | nucleobase-containing compound metabolic process | |
| GO:0006139 | IEA | InterPro | nucleobase-containing compound metabolic process | |
| GO:0006414 | IEA | GOA Database | translational elongation | |
| GO:0009793 | ISO | PLAZA Integrative Orthology | embryo development ending in seed dormancy | AT1G63210 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0003746 | IEA | GOA Database | translation elongation factor activity | |
| GO:0003676 | IEA | GOA Database | nucleic acid binding | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT1G65440 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0009506 | ISO | PLAZA Integrative Orthology | plasmodesma | AT1G65440 |
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT1G65440 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR036860 | SH2 domain superfamily |
| IPR028088 | Helix-turn-helix DNA-binding domain of Spt6 |
| IPR023323 | Tex-like domain superfamily |
| IPR032706 | Transcription elongation factor Spt6, helix-hairpin-helix motif |
| IPR012337 | Ribonuclease H-like superfamily |
| IPR017072 | Transcription elongation factor Spt6 |
| IPR012340 | Nucleic acid-binding, OB-fold |
| IPR010994 | RuvA domain 2-like |
| IPR028083 | Spt6 acidic, N-terminal domain |
| IPR037027 | YqgF/RNase H-like domain superfamily |
| IPR042066 | Spt6, Death-like domain |
| IPR035018 | Spt6, SH2 domain, C terminus |
| IPR028231 | Transcription elongation factor Spt6, YqgF domain |
| IPR022967 | RNA-binding domain, S1 |
| IPR035420 | Spt6, SH2 domain |
| IPR041692 | HHH domain 9 |
| IPR035019 | Spt6, SH2 domain, N terminus |
| IPR023319 | Tex-like protein, HTH domain superfamily |
| IPR006641 | YqgF/RNase H-like domain |
| Mapman id | Description |
|---|---|
| 15.3.5.4.1 | RNA biosynthesis.RNA polymerase II-dependent transcription.transcription elongation.SPT6-IWS1 transcription elongation complex.component SPT6 |