Gene: FAN28G1503
General Information
Structural Information
- Species Fragaria x ananassa
- Gene Identifier FAN28G1503
- Transcript Identifier FAN28G1503.1
- Gene Type Coding gene
- Location Fvb1-1 : 26351222-26355081 : negative
Gene Family Information
- ID HOM05D002640
- #Genes/#Species 260/99
- Phylogenetic origin
- ID ORTHO05D003231
- #Genes/#Species 236/99
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
- Block Duplication Block duplicate
Labels
Identifiers
- id snap_masked-Fvb1-1-processed-gene-263.37.v1.0.a1
- pacid 50527212
Descriptions
- Description PF14635//PF14639//PF14878 - Helix-hairpin-helix motif (HHH_7) // Holliday-junction resolvase-like of SPT6 (YqgF) // Death-like domain of SPT6 (DLD)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006139 | IEA | InterPro | nucleobase-containing compound metabolic process | |
| GO:0032968 | IEA | InterPro | positive regulation of transcription elongation from RNA polymerase II promoter | |
| GO:0009793 | ISO | PLAZA Integrative Orthology | embryo development ending in seed dormancy | AT1G63210 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT1G65440 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009506 | ISO | PLAZA Integrative Orthology | plasmodesma | AT1G65440 |
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT1G65440 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR023319 | Tex-like protein, HTH domain superfamily |
| IPR012340 | Nucleic acid-binding, OB-fold |
| IPR012337 | Ribonuclease H-like superfamily |
| IPR037027 | YqgF/RNase H-like domain superfamily |
| IPR028231 | Transcription elongation factor Spt6, YqgF domain |
| IPR042066 | Spt6, Death-like domain |
| IPR023323 | Tex-like domain superfamily |
| IPR032706 | Transcription elongation factor Spt6, helix-hairpin-helix motif |
| IPR010994 | RuvA domain 2-like |
| IPR017072 | Transcription elongation factor Spt6 |
| IPR041692 | HHH domain 9 |
| Mapman id | Description |
|---|---|
| 15.3.5.4.1 | RNA biosynthesis.RNA polymerase II-dependent transcription.transcription elongation.SPT6-IWS1 transcription elongation complex.component SPT6 |