Gene: SHI11341

General Information

Structural Information

  • Species Sapria himalayana
  • Gene Identifier SHI11341
  • Transcript Identifier SHI11341-RA
  • Gene Type Coding gene
  • Location scaffold13_12996478 : 11773766-11809363 : negative

Gene Family Information

  • ID HOM05D002640
  • #Genes/#Species 260/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid SHI11341-RA

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006139
IEA
InterPronucleobase-containing compound metabolic process
GO:0006464
IEA
InterProcellular protein modification process
GO:0015031
IEA
InterProprotein transport
GO:0032968
IEA
InterPropositive regulation of transcription elongation from RNA polymerase II promoter
GO:0009793
ISO
PLAZA Integrative Orthologyembryo development ending in seed dormancy AT1G63210

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G65440

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT1G65440
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT1G65440

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR037202 ESCRT assembly domain
IPR035420 Spt6, SH2 domain
IPR036860 SH2 domain superfamily
IPR037027 YqgF/RNase H-like domain superfamily
IPR008883 Ubiquitin E2 variant, N-terminal
IPR032706 Transcription elongation factor Spt6, helix-hairpin-helix motif
IPR012340 Nucleic acid-binding, OB-fold
IPR016135 Ubiquitin-conjugating enzyme/RWD-like
IPR010994 RuvA domain 2-like
IPR042066 Spt6, Death-like domain
IPR023323 Tex-like domain superfamily
IPR023319 Tex-like protein, HTH domain superfamily
IPR041692 HHH domain 9
IPR017916 Steadiness box (SB) domain
IPR017072 Transcription elongation factor Spt6
IPR035018 Spt6, SH2 domain, C terminus
IPR012337 Ribonuclease H-like superfamily
IPR022967 RNA-binding domain, S1
IPR028231 Transcription elongation factor Spt6, YqgF domain
IPR035019 Spt6, SH2 domain, N terminus
Mapman id Description
15.3.5.4.1 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription elongation.SPT6-IWS1 transcription elongation complex.component SPT6
22.4.1.1.1 Vesicle trafficking.endocytic trafficking.ESCRT-mediated sorting.ESCRT-I complex.component VPS23