Gene: Zm00001eb291590
General Information
Structural Information
- Species Zea mays
- Gene Identifier Zm00001eb291590
- Transcript Identifier Zm00001eb291590_T004
- Gene Type Coding gene
- Location 6 : 167433342-167447271 : positive
Gene Family Information
- ID HOM05D002640
- #Genes/#Species 260/99
- Phylogenetic origin
- ID ORTHO05D003231
- #Genes/#Species 236/99
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Zm00001eb291590_T004
- pid Zm00001eb291590_P004
- uniprot A0A1D6M7A5
- uniprot A0A3L6EEB6
- uniprot A0A1D6M7A2
- uniprot A0A1D6M7A3
- uniprot A0A1D6M799
- uniprot A0A1D6M7A1
- uniprot A0A1D6M796
- uniprot A0A1D6M797
- uniprot A0A1D6M794
- uniprot A0A1D6M795
- uniprot A0A1D6M793
- uniprot A0A1D6M791
- entrez 103630545
- refseq XP_008649817.1
- refseq XM_008651595.1
- V4_identifier Zm00001d038570
Descriptions
- Description Zm00001e032018
- Description global transcription factor group B1
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0009793 | ISO | PLAZA Integrative Orthology | embryo development ending in seed dormancy | AT1G63210 |
GO:0006139 | IEA | GOA Database | nucleobase-containing compound metabolic process | |
GO:0006139 | IEA | InterPro | nucleobase-containing compound metabolic process | |
GO:0032968 | IBA IEA | GOA Database | positive regulation of transcription elongation from RNA polymerase II promoter | |
GO:0032968 | IEA | InterPro | positive regulation of transcription elongation from RNA polymerase II promoter | |
GO:0006368 | IBA | GOA Database | transcription elongation from RNA polymerase II promoter | |
GO:0050684 | IBA | GOA Database | regulation of mRNA processing | |
GO:0042789 | IBA | GOA Database | mRNA transcription by RNA polymerase II | |
GO:0070827 | IBA | GOA Database | chromatin maintenance | |
GO:0034728 | IBA | GOA Database | nucleosome organization | |
GO:0006414 | IEA | GOA Database | translational elongation |
Molecular Function
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0042393 | IBA | GOA Database | histone binding | |
GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT1G65440 |
GO:0031491 | IBA | GOA Database | nucleosome binding | |
GO:0003746 | IEA | GOA Database | translation elongation factor activity | |
GO:0003676 | IEA | GOA Database | nucleic acid binding |
Cellular Component
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT1G65440 |
GO:0009506 | ISO | PLAZA Integrative Orthology | plasmodesma | AT1G65440 |
GO:0035327 | IBA | GOA Database | transcriptionally active chromatin | |
GO:0008023 | IBA | GOA Database | transcription elongation factor complex | |
GO:0005634 | IEA | GOA Database | nucleus |
Color Legend
Experimental Evidence |
Computational Reviewed Evidence |
Electronic Evidence |
InterPro | Description |
---|---|
IPR036860 | SH2 domain superfamily |
IPR035019 | Spt6, SH2 domain, N terminus |
IPR017072 | Transcription elongation factor Spt6 |
IPR037027 | YqgF/RNase H-like domain superfamily |
IPR012340 | Nucleic acid-binding, OB-fold |
IPR010994 | RuvA domain 2-like |
IPR035420 | Spt6, SH2 domain |
IPR035018 | Spt6, SH2 domain, C terminus |
IPR023319 | Tex-like protein, HTH domain superfamily |
IPR012337 | Ribonuclease H-like superfamily |
IPR042066 | Spt6, Death-like domain |
IPR032706 | Transcription elongation factor Spt6, helix-hairpin-helix motif |
IPR028083 | Spt6 acidic, N-terminal domain |
Mapman id | Description |
---|---|
15.3.5.4.1 | RNA biosynthesis.RNA polymerase II-dependent transcription.transcription elongation.SPT6-IWS1 transcription elongation complex.component SPT6 |