Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400004370 Solanum tuberosum HOM05D003938 ORTHO05D004759 4.6e-166 587.8 293 100.0
Sopen02g012840 Solanum pennellii HOM05D003938 ORTHO05D004759 1.2e-145 520.0 288 92.0
Solyc12g049430.1 Solanum lycopersicum HOM05D003938 ORTHO05D004759 3.0e-141 505.4 288 88.9
Sopen12g031080 Solanum pennellii HOM05D003938 ORTHO05D004759 3.6e-126 455.3 269 86.2
Sopen12g023920 Solanum pennellii HOM05D003938 ORTHO05D004759 8.5e-120 434.1 286 80.1
PGSC0003DMG400026878 Solanum tuberosum HOM05D003938 ORTHO05D004759 5.5e-119 431.4 263 84.8
Solyc07g066420.4 Solanum lycopersicum HOM05D003938 ORTHO05D004759 5.9e-105 384.8 317 66.2
Peaxi162Scf00452g00848 Petunia axillaris HOM05D003938 ORTHO05D004759 2.1e-102 376.3 317 65.6
Phvul.011G177175 Phaseolus vulgaris HOM05D003938 ORTHO05D004759 6.1e-102 374.8 251 74.1
Glyma.15G213200 Glycine max HOM05D003938 ORTHO05D004759 1.5e-100 370.2 251 74.1
Sopen07g034590 Solanum pennellii HOM05D003938 ORTHO05D004759 1.3e-99 367.1 317 64.4
Glyma.19G004200 Glycine max HOM05D003938 ORTHO05D004759 1.7e-99 366.7 285 67.4
GSVIVG01020281001 Vitis vinifera HOM05D003938 ORTHO05D004759 1.7e-99 366.7 314 65.6
MSTRG.16112 Avicennia marina HOM05D003938 ORTHO05D004759 2.8e-99 365.9 321 62.0
Dinv19621 Davidia involucrata HOM05D003938 ORTHO05D004759 3.7e-99 365.5 252 74.2
Lalb_Chr01g0007211 Lupinus albus HOM05D003938 ORTHO05D004759 3.7e-99 365.5 251 73.3
Lj3g0013935 Lotus japonicus HOM05D003938 ORTHO05D004759 6.3e-99 364.8 274 67.9
Medtr8g442420 Medicago truncatula HOM05D003938 ORTHO05D004759 6.3e-99 364.8 246 74.0
Cc05_g16030 Coffea canephora HOM05D003938 ORTHO05D004759 1.8e-98 363.2 292 65.4
Migut.M01560 Erythranthe guttata HOM05D003938 ORTHO05D004759 2.4e-98 362.8 320 60.3
Duzib168G1061 Durio zibethinus HOM05D003938 ORTHO05D004759 7.0e-98 361.3 247 73.7
Lsat_1_v5_gn_7_71321 Lactuca sativa HOM05D003938 ORTHO05D004759 7.0e-98 361.3 248 73.4
MD05G1222400 Malus domestica HOM05D003938 ORTHO05D004759 1.6e-97 360.1 251 72.1
Prupe.4G137900 Prunus persica HOM05D003938 ORTHO05D004759 1.6e-97 360.1 252 72.6
Aa31LG10G170 Aethionema arabicum HOM05D003938 ORTHO05D004759 2.0e-97 359.8 252 73.0
MD10G1204000 Malus domestica HOM05D003938 ORTHO05D004759 2.7e-97 359.4 251 71.3
Sp1g38950 Schrenkiella parvula HOM05D003938 ORTHO05D004759 2.7e-97 359.4 267 68.5
Gohir.D05G003701 Gossypium hirsutum HOM05D003938 ORTHO05D004759 1.0e-96 357.5 243 73.3
CSS0000259 Camellia sinensis var. sinensis HOM05D003938 ORTHO05D004759 1.7e-96 356.7 286 66.8
Eucgr.F01467 Eucalyptus grandis HOM05D003938 ORTHO05D004759 1.7e-96 356.7 240 72.5
CSS0019207 Camellia sinensis var. sinensis HOM05D003938 ORTHO05D004759 2.3e-96 356.3 280 67.9
CsaV3_7G022770 Cucumis sativus L. HOM05D003938 ORTHO05D004759 2.3e-96 356.3 241 73.4
Gorai.009G003300 Gossypium raimondii HOM05D003938 ORTHO05D004759 2.3e-96 356.3 252 71.4
MELO3C012622.2 Cucumis melo HOM05D003938 ORTHO05D004759 3.8e-96 355.5 241 73.4
THA.LOC104822756 Tarenaya hassleriana HOM05D003938 ORTHO05D004759 6.6e-96 354.8 293 65.9
AL1G62420 Arabidopsis lyrata HOM05D003938 ORTHO05D004759 8.6e-96 354.4 281 66.5
Thhalv10011414m.g Eutrema salsugineum HOM05D003938 ORTHO05D004759 8.6e-96 354.4 281 66.9
Nitab4.5_0001749g0120 Nicotiana tabacum HOM05D003938 ORTHO05D004759 8.6e-96 354.4 319 63.0
CAN.G943.34 Capsicum annuum HOM05D003938 ORTHO05D004759 1.1e-95 354.0 323 62.5
Lj8A187T28 Lonicera japonica HOM05D003938 ORTHO05D004759 1.9e-95 353.2 241 74.3
Nitab4.5_0009317g0010 Nicotiana tabacum HOM05D003938 ORTHO05D004759 2.5e-95 352.8 319 63.0
Carub.0001s4300 Capsella rubella HOM05D003938 ORTHO05D004759 4.2e-95 352.1 282 67.0
Manes.06G173850 Manihot esculenta HOM05D003938 ORTHO05D004759 1.2e-94 350.5 320 60.6
Sed0018665 Sechium edule HOM05D003938 ORTHO05D004759 1.2e-94 350.5 307 62.9
Potri.005G097500 Populus trichocarpa HOM05D003938 ORTHO05D004759 2.8e-94 349.4 311 61.7
arahy.Tifrunner.gnm1.ann1.KA488U Arachis hypogaea HOM05D003938 ORTHO05D004759 3.6e-94 349.0 291 65.3
FAN11G2591 Fragaria x ananassa HOM05D003938 ORTHO05D004759 3.6e-94 349.0 241 73.0
Gohir.A05G003300 Gossypium hirsutum HOM05D003938 ORTHO05D004759 3.6e-94 349.0 288 65.3
FAN25G2080 Fragaria x ananassa HOM05D003938 ORTHO05D004759 4.7e-94 348.6 269 68.8
Actinidia07348 Actinidia chinensis HOM05D003938 ORTHO05D004759 8.0e-94 347.8 320 59.4
arahy.Tifrunner.gnm1.ann1.TD7I6F Arachis hypogaea HOM05D003938 ORTHO05D004759 1.0e-93 347.4 314 62.1
FvH4_3g15530 Fragaria vesca HOM05D003938 ORTHO05D004759 1.0e-93 347.4 269 68.4
FAN16G1651 Fragaria x ananassa HOM05D003938 ORTHO05D004759 1.0e-93 347.4 269 68.4
FAN21G1947 Fragaria x ananassa HOM05D003938 ORTHO05D004759 1.4e-93 347.1 269 68.4
RcHm_v2.0_Chr5g0026161 Rosa chinensis HOM05D003938 ORTHO05D004759 2.3e-93 346.3 269 69.1
Nn7g37935 Nelumbo nucifera HOM05D003938 ORTHO05D004759 3.0e-93 345.9 252 71.0
AUR62040863 Chenopodium quinoa HOM05D003938 ORTHO05D004759 1.5e-92 343.6 327 57.2
PSO675G9176 Papaver somniferum HOM05D003938 ORTHO05D004759 2.6e-92 342.8 252 70.6
AUR62037621 Chenopodium quinoa HOM05D003938 ORTHO05D004759 5.7e-92 341.7 327 57.2
QL04p077115 Quercus lobata HOM05D003938 ORTHO05D004759 5.7e-92 341.7 324 58.6
TWI74G0164 Tripterygium wilfordii HOM05D003938 ORTHO05D004759 1.3e-91 340.5 293 62.1
PSO717G0129 Papaver somniferum HOM05D003938 ORTHO05D004759 8.3e-91 337.8 286 64.7
CARHR044020 Cardamine hirsuta HOM05D003938 ORTHO05D004759 1.1e-90 337.4 282 63.5
ECA240G3729 Erigeron canadensis HOM05D003938 ORTHO05D004759 1.1e-90 337.4 242 71.5
Sc09g0007280 Simmondsia chinensis HOM05D003938 ORTHO05D004759 1.4e-90 337.0 288 63.2
Solyc02g061800.2 Solanum lycopersicum HOM05D003938 ORTHO05D004759 1.4e-90 337.0 231 78.8
unitig_26.g10081 Utricularia gibba HOM05D003938 ORTHO05D004759 3.1e-90 335.9 325 57.5
Thecc.09G180900 Theobroma cacao HOM05D003938 ORTHO05D004759 4.1e-90 335.5 368 53.5
Sabra05G0079800 Salix brachista HOM05D003938 ORTHO05D004759 7.0e-90 334.7 327 58.4
ATR0763G204 Amborella trichopoda HOM05D003938 ORTHO05D004759 9.2e-90 334.3 248 69.8
CSS0016392 Camellia sinensis var. sinensis HOM05D003938 ORTHO05D004759 9.2e-90 334.3 313 59.7
AT1G53720 Arabidopsis thaliana HOM05D003938 ORTHO05D004759 1.6e-89 333.6 281 63.3
CDE01G0219 Ceratophyllum demersum HOM05D003938 ORTHO05D004759 1.6e-89 333.6 313 60.1
Aqoxy3G04185_Aqoxy3G04186 Aquilegia oxysepala HOM05D003938 ORTHO05D004759 1.3e-88 330.5 314 59.9
Solyc12g038120.3 Solanum lycopersicum HOM05D003938 ORTHO05D004759 3.9e-88 328.9 209 82.8
Ciclev10004604m.g Citrus clementina HOM05D003938 ORTHO05D004759 8.6e-88 327.8 307 58.0
Carub.0008s0543 Capsella rubella HOM05D003938 ORTHO05D004759 1.9e-87 326.6 284 62.0
PGR119G1566 Punica granatum HOM05D003938 ORTHO05D004759 3.3e-87 325.9 245 68.6
SGA_v2.0_scaffold7G03579 Striga asiatica HOM05D003938 ORTHO05D004759 5.6e-87 325.1 284 62.7
TAR626G0088 Trochodendron aralioides HOM05D003938 ORTHO05D004759 1.2e-86 323.9 356 54.8
Os06g0670500 Oryza sativa ssp. japonica HOM05D003938 ORTHO05D004759 2.1e-86 323.2 248 67.3
EL10Ac2g03350 Beta vulgaris HOM05D003938 ORTHO05D004759 3.6e-86 322.4 360 51.4
Medtr6g084140 Medicago truncatula HOM05D003938 ORTHO05D004759 3.6e-86 322.4 246 67.9
A08p00110 Brassica napus HOM05D000173 ORTHO05D008065 8.0e-86 321.2 285 61.1
BraA08t32068Z Brassica rapa HOM05D003938 ORTHO05D008065 8.0e-86 321.2 285 61.1
HanXRQChr05g0160881 Helianthus annuus HOM05D003938 ORTHO05D004759 8.0e-86 321.2 247 66.8
BcaB04g16924 Brassica carinata HOM05D003938 ORTHO05D004759 1.8e-85 320.1 286 61.9
BolC3t21636H Brassica oleracea HOM05D003938 ORTHO05D008065 1.8e-85 320.1 286 61.9
CiPaw.01G119900 Carya illinoinensis HOM05D003938 ORTHO05D004759 1.8e-85 320.1 247 68.0
AagrBONN_evm.TU.Sc2ySwM_368.1871 Anthoceros agrestis HOM05D003938 ORTHO05D004759 3.1e-85 319.3 250 63.6
C03p93390 Brassica napus HOM05D003938 ORTHO05D008065 4.0e-85 318.9 285 61.1
CANSAT80G1380 Cannabis sativa HOM05D003938 ORTHO05D004759 6.8e-85 318.2 298 59.1
SMO351G0536 Selaginella moellendorffii HOM05D003938 ORTHO05D004759 2.0e-84 316.6 238 68.5
TPR.G22448 Trifolium pratense HOM05D003938 ORTHO05D004759 5.8e-84 315.1 292 59.2
Zm00001eb274050 Zea mays HOM05D003938 ORTHO05D004759 6.4e-83 311.6 290 58.6
HPP92_008853 Vanilla planifolia HOM05D003938 ORTHO05D004759 1.4e-82 310.5 240 67.1
ClCG09G022610 Citrullus lanatus HOM05D003938 ORTHO05D004759 3.2e-82 309.3 367 51.2
HPP92_008859 Vanilla planifolia HOM05D003938 ORTHO05D004759 3.2e-82 309.3 240 67.1
Mapoly0010s0175 Marchantia polymorpha HOM05D003938 ORTHO05D004759 1.9e-79 300.1 265 60.8
Lj2g0001970 Lotus japonicus HOM05D003938 ORTHO05D004759 4.3e-79 298.9 212 70.3
CSS0024659 Camellia sinensis var. sinensis HOM05D003938 ORTHO05D004759 1.6e-78 297.0 313 55.3
Ca_12645_v3 Cicer arietinum L. HOM05D003938 ORTHO05D004759 6.2e-78 295.0 298 54.7
CSS0007376 Camellia sinensis var. sinensis HOM05D003938 ORTHO05D004759 2.0e-76 290.0 313 55.6
EL10Ac6g14412 Beta vulgaris HOM05D003938 ORTHO05D004759 7.5e-76 288.1 243 60.9
DCAR_013743 Daucus carota HOM05D003938 ORTHO05D004759 3.7e-75 285.8 202 72.8
Cre11.g479850 Chlamydomonas reinhardtii HOM05D003938 ORTHO05D004759 1.2e-70 270.8 262 56.9
VMungo1127G1769 Vigna mungo HOM05D003938 ORTHO05D004759 1.2e-70 270.8 198 69.7
THA.LOC104822789 Tarenaya hassleriana HOM05D003938 ORTHO05D004759 2.8e-70 269.6 187 72.2
Haze_07842 Corylus avellana HOM05D003938 ORTHO05D004759 1.2e-68 264.2 197 69.0
Pp3c1_5600 Physcomitrium patens HOM05D003938 ORTHO05D004759 1.2e-68 264.2 244 59.0
Cpa.g.sc331.3 Carica papaya HOM05D003938 ORTHO05D004759 9.9e-68 261.2 190 68.9
Ciclev10007155m.g Citrus clementina HOM05D003938 ORTHO05D004759 9.2e-66 254.6 237 56.1
vmacro11660 Vaccinium macrocarpon HOM05D003938 ORTHO05D004759 2.7e-65 253.1 318 49.4
MCO01G120 Micromonas commoda HOM05D003938 ORTHO05D004759 1.1e-63 247.7 271 52.4
Os06g0670400 Oryza sativa ssp. japonica HOM05D003938 ORTHO05D004759 3.8e-59 232.6 198 62.1
PGSC0003DMG400021758 Solanum tuberosum HOM05D003938 ORTHO05D004759 8.4e-59 231.5 123 92.7
TPR.G9407 Trifolium pratense HOM05D003938 ORTHO05D004759 8.4e-59 231.5 310 48.7
Haze_26935 Corylus avellana HOM05D003938 ORTHO05D004759 3.5e-57 226.1 240 50.8
AL1G53090 Arabidopsis lyrata HOM05D000070 ORTHO05D004759 6.0e-57 225.3 252 50.4
PGSC0003DMG400004369 Solanum tuberosum HOM05D003938 ORTHO05D004759 1.5e-55 220.7 226 59.3
MBI01_g43617_MAGBIO Magnolia biondii HOM05D003938 ORTHO05D004759 7.3e-55 218.4 163 69.9
Nitab4.5_0004242g0030 Nicotiana tabacum HOM05D003938 ORTHO05D004759 1.3e-54 217.6 242 52.1
SMO353G0235 Selaginella moellendorffii HOM05D003938 ORTHO05D004759 4.4e-52 209.1 230 52.6
AagrBONN_evm.TU.Sc2ySwM_344.2630 Anthoceros agrestis HOM05D003938 ORTHO05D004759 2.1e-46 190.3 244 46.3
Cfa023095 Carpinus fangiana HOM05D003938 ORTHO05D004759 2.1e-46 190.3 299 41.1
Psat4g174120 Pisum sativum HOM05D003938 ORTHO05D004759 8.1e-46 188.3 136 68.4
TPR.G24716 Trifolium pratense HOM05D003938 ORTHO05D004759 6.9e-45 185.3 195 54.4
Haze_10874 Corylus avellana HOM05D003938 ORTHO05D004759 3.2e-42 176.4 138 67.4
ECA248G1281 Erigeron canadensis HOM05D003938 ORTHO05D004759 4.6e-41 172.6 140 66.4
PSO675G8491 Papaver somniferum HOM05D003938 ORTHO05D004759 4.6e-41 172.6 191 53.9
Atru.chr1.189 Acer truncatum HOM05D003938 ORTHO05D004759 3.0e-40 169.9 110 73.6
Sopen12g017720 Solanum pennellii HOM05D000006 ORTHO05D000001 7.4e-39 165.2 189 51.9
Solyc12g038010.1 Solanum lycopersicum HOM05D003938 ORTHO05D004759 2.4e-37 160.2 107 79.4
PSO447G0031 Papaver somniferum HOM05D003938 ORTHO05D004759 3.4e-36 156.4 190 47.9
EL10Ac6g14407 Beta vulgaris HOM05D003938 ORTHO05D004759 1.7e-35 154.1 199 48.7
Eucgr.F01469 Eucalyptus grandis HOM05D003938 ORTHO05D004759 1.7e-35 154.1 106 71.7
Aqoxy7G03516 Aquilegia oxysepala HOM05D003938 ORTHO05D004759 2.2e-35 153.7 219 45.2
Solyc12g038020.3 Solanum lycopersicum HOM05D003938 ORTHO05D004759 2.9e-35 153.3 121 67.8
PGSC0003DMG400017036 Solanum tuberosum HOM05D003938 ORTHO05D004759 2.7e-33 146.7 160 53.8
AUR62039463 Chenopodium quinoa HOM05D003938 ORTHO05D004759 1.0e-32 144.8 140 55.0
PRCOL_00005663 Prasinoderma coloniale HOM05D000144 ORTHO05D004759 2.3e-32 143.7 207 40.1
AT1G53780 Arabidopsis thaliana HOM05D000070 ORTHO05D003301 5.1e-32 142.5 202 43.6
Sopen12g023950 Solanum pennellii HOM05D003938 ORTHO05D004759 2.5e-31 140.2 225 44.4
SHI21595 Sapria himalayana HOM05D000002 ORTHO05D004759 1.6e-30 137.5 96 71.9
CBR_g2919 Chara braunii HOM05D003938 ORTHO05D004759 3.1e-29 133.3 147 49.7
Atru.chr1.190 Acer truncatum HOM05D003938 ORTHO05D004759 9.0e-29 131.7 179 47.5
Psat4g174080 Pisum sativum HOM05D003938 ORTHO05D004759 2.0e-28 130.6 102 65.7
SEGI_08656 Sequoiadendron giganteum HOM05D003938 ORTHO05D004759 1.3e-27 127.9 91 67.0
AL1G64340 Arabidopsis lyrata HOM05D003938 ORTHO05D004759 6.5e-27 125.6 138 52.2
Sopen12g017810 Solanum pennellii HOM05D003308 ORTHO05D000977 1.2e-25 121.3 87 74.7
Solyc12g038070.1 Solanum lycopersicum HOM05D003938 ORTHO05D004759 2.7e-25 120.2 78 78.2
Solyc09g018480.1 Solanum lycopersicum HOM05D003938 ORTHO05D004759 1.5e-23 114.4 84 69.0
Oeu003830.4 Olea europaea HOM05D003938 ORTHO05D004759 1.1e-21 108.2 205 36.6
SHI21597 Sapria himalayana HOM05D003938 ORTHO05D004759 1.9e-18 97.4 88 60.2
Solyc12g038150.1 Solanum lycopersicum HOM05D003938 ORTHO05D004759 2.1e-17 94.0 73 72.6
SEGI_12892 Sequoiadendron giganteum HOM05D003938 ORTHO05D004759 5.7e-15 85.9 73 58.9
VMungo1127G1443 Vigna mungo HOM05D003938 ORTHO05D004759 9.1e-13 78.6 88 51.1
AUR62027709 Chenopodium quinoa HOM05D003938 ORTHO05D004759 1.5e-12 77.8 55 69.1
C06p15260 Brassica napus HOM05D000070 ORTHO05D003301 4.5e-12 76.3 82 53.7
AUR62041826 Chenopodium quinoa HOM05D003938 ORTHO05D004759 7.7e-12 75.5 55 67.3
SGA_v2.0_scaffold186G40224 Striga asiatica HOM05D004893 ORTHO05D006320 1.7e-11 74.3 63 61.9
Solyc12g038030.1 Solanum lycopersicum HOM05D003938 ORTHO05D004759 6.1e-09 65.9 35 85.7
Potri.007G067000 Populus trichocarpa HOM05D003938 ORTHO05D004759 1.0e-08 65.1 93 46.2
PGSC0003DMG400022237 Solanum tuberosum HOM05D003938 ORTHO05D004759 1.8e-08 64.3 106 44.3
Nitab4.5_0004242g0040 Nicotiana tabacum HOM05D003938 ORTHO05D004759 8.8e-08 62.0 83 44.6
PSO675G5023 Papaver somniferum HOM05D004170 ORTHO05D005976 5.7e-07 59.3 125 32.8
CBR_g19868 Chara braunii HOM05D004170 ORTHO05D005976 1.3e-06 58.2 115 33.0
CARHR248660 Cardamine hirsuta HOM05D003938 ORTHO05D004759 2.2e-06 57.4 45 57.8
EL10Ac3g06299 Beta vulgaris HOM05D004170 ORTHO05D005976 2.8e-06 57.0 137 32.8
Phvul.008G006500 Phaseolus vulgaris HOM05D004170 ORTHO05D005976 3.7e-06 56.6 131 29.8
Ah.07g204090 Amaranthus hybridus HOM05D004170 ORTHO05D005976 4.8e-06 56.2 141 31.9
arahy.Tifrunner.gnm1.ann1.GESE75 Arachis hypogaea HOM05D004170 ORTHO05D005976 4.8e-06 56.2 137 31.4
arahy.Tifrunner.gnm1.ann1.VAWH7V Arachis hypogaea HOM05D004170 ORTHO05D005976 4.8e-06 56.2 137 31.4
Ca_08074_v3 Cicer arietinum L. HOM05D003195 ORTHO05D003773 4.8e-06 56.2 137 31.4
TWI79G0953 Tripterygium wilfordii HOM05D000428 ORTHO05D000582 4.8e-06 56.2 98 31.6
MCO11G066 Micromonas commoda HOM05D000144 ORTHO05D006641 6.3e-06 55.8 70 41.4
AT5G59865 Arabidopsis thaliana HOM05D000142 ORTHO05D000124 8.2e-06 55.5 82 34.1
Sabra16G0202500 Salix brachista HOM05D000142 ORTHO05D000124 8.2e-06 55.5 96 32.3


User provided reference genes

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