Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G3144 Fragaria x ananassa HOM05D003820 ORTHO05D004540 5.6e-158 560.8 274 100.0
FAN05G4407 Fragaria x ananassa HOM05D003820 ORTHO05D004540 5.6e-158 560.8 274 100.0
FvH4_6g03150 Fragaria vesca HOM05D003820 ORTHO05D004540 3.4e-123 445.3 290 78.6
FAN14G5460 Fragaria x ananassa HOM05D003820 ORTHO05D004540 3.2e-121 438.7 281 80.4
FAN09G3292 Fragaria x ananassa HOM05D003820 ORTHO05D004540 5.0e-114 414.8 288 76.0
FAN02G3088 Fragaria x ananassa HOM05D003820 ORTHO05D004540 2.7e-112 409.1 290 74.1
FAN21G2909 Fragaria x ananassa HOM05D003820 ORTHO05D004540 1.5e-102 376.7 304 64.8
FAN25G1165 Fragaria x ananassa HOM05D003820 ORTHO05D004540 9.8e-102 374.0 304 64.5
FvH4_3g00980 Fragaria vesca HOM05D003820 ORTHO05D004540 1.3e-101 373.6 304 64.5
QL05p069714 Quercus lobata HOM05D003820 ORTHO05D004540 6.5e-98 361.3 321 59.5
PSO541G5704 Papaver somniferum HOM05D003820 ORTHO05D004540 8.6e-98 360.9 299 61.5
Rhsim02G0099100 Rhododendron simsii HOM05D003820 ORTHO05D004540 1.1e-97 360.5 305 63.0
Prupe.4G010400 Prunus persica HOM05D003820 ORTHO05D004540 1.5e-97 360.1 316 62.0
Ciclev10004667m.g Citrus clementina HOM05D003820 ORTHO05D004540 3.2e-97 359.0 316 60.8
MD10G1331700 Malus domestica HOM05D003820 ORTHO05D004540 5.5e-97 358.2 316 60.8
PSO675G6471 Papaver somniferum HOM05D003820 ORTHO05D004540 7.2e-97 357.8 299 61.2
MELO3C025562.2 Cucumis melo HOM05D003820 ORTHO05D004540 2.1e-96 356.3 315 59.0
CsaV3_1G017170 Cucumis sativus L. HOM05D003820 ORTHO05D004540 6.1e-96 354.8 315 58.7
CANSAT56G3158 Cannabis sativa HOM05D003820 ORTHO05D004540 1.8e-95 353.2 315 60.0
PGR042G2289 Punica granatum HOM05D003820 ORTHO05D004540 2.3e-95 352.8 318 59.1
PGR102G0671 Punica granatum HOM05D003820 ORTHO05D004540 2.3e-95 352.8 320 59.4
Manes.01G126900 Manihot esculenta HOM05D003820 ORTHO05D004540 4.0e-95 352.1 323 58.8
vmacro15759 Vaccinium macrocarpon HOM05D003820 ORTHO05D004540 5.2e-95 351.7 321 58.3
Sed0023864 Sechium edule HOM05D003820 ORTHO05D004540 6.8e-95 351.3 308 59.4
Actinidia39270 Actinidia chinensis HOM05D003820 ORTHO05D004540 8.8e-95 350.9 321 58.6
Cc09_g00870 Coffea canephora HOM05D003820 ORTHO05D004540 8.8e-95 350.9 322 59.6
Sc17g0007740 Simmondsia chinensis HOM05D003820 ORTHO05D004540 1.5e-94 350.1 321 58.3
Haze_06925 Corylus avellana HOM05D003820 ORTHO05D004540 2.0e-94 349.7 321 58.9
Dinv07403 Davidia involucrata HOM05D003820 ORTHO05D004540 2.0e-94 349.7 321 59.2
MD05G1357700 Malus domestica HOM05D003820 ORTHO05D004540 2.0e-94 349.7 316 60.1
TPR.G29505 Trifolium pratense HOM05D003820 ORTHO05D004540 2.0e-94 349.7 296 61.1
Manes.02G083800 Manihot esculenta HOM05D003820 ORTHO05D004540 2.6e-94 349.4 318 58.8
VMungo0647G1639 Vigna mungo HOM05D003820 ORTHO05D004540 3.4e-94 349.0 322 58.1
TAR626G0254 Trochodendron aralioides HOM05D003820 ORTHO05D004540 4.4e-94 348.6 321 59.5
Glyma.10G073300 Glycine max HOM05D003820 ORTHO05D004540 5.7e-94 348.2 322 58.7
Potri.006G010100 Populus trichocarpa HOM05D003820 ORTHO05D004540 7.5e-94 347.8 322 59.3
CiPaw.10G077900 Carya illinoinensis HOM05D003820 ORTHO05D004540 9.8e-94 347.4 321 57.9
Os09g0407900 Oryza sativa ssp. japonica HOM05D003820 ORTHO05D004540 9.8e-94 347.4 314 59.2
Aqoxy3G02484 Aquilegia oxysepala HOM05D003820 ORTHO05D004540 1.3e-93 347.1 310 59.4
Lj2A261T37 Lonicera japonica HOM05D003820 ORTHO05D004540 1.3e-93 347.1 301 61.8
Potri.016G014000 Populus trichocarpa HOM05D003820 ORTHO05D004540 1.3e-93 347.1 316 57.6
Zm00001eb225610 Zea mays HOM05D003820 ORTHO05D004540 1.7e-93 346.7 321 58.6
Gohir.D06G216200 Gossypium hirsutum HOM05D003820 ORTHO05D004540 2.2e-93 346.3 266 67.3
Haze_06920 Corylus avellana HOM05D003820 ORTHO05D004540 2.8e-93 345.9 321 58.6
Phvul.008G270100 Phaseolus vulgaris HOM05D003820 ORTHO05D004540 2.8e-93 345.9 322 58.1
Ca_00446_v3 Cicer arietinum L. HOM05D003820 ORTHO05D004540 3.7e-93 345.5 322 57.8
Eucgr.H03283 Eucalyptus grandis HOM05D003820 ORTHO05D004540 3.7e-93 345.5 322 58.7
Lj2g0013565 Lotus japonicus HOM05D003820 ORTHO05D004540 3.7e-93 345.5 322 58.1
RcHm_v2.0_Chr5g0001511 Rosa chinensis HOM05D003820 ORTHO05D004540 4.9e-93 345.1 284 65.1
Phvul.007G152400 Phaseolus vulgaris HOM05D003820 ORTHO05D004540 6.3e-93 344.7 322 58.1
Glyma.13G154200 Glycine max HOM05D003820 ORTHO05D004540 8.3e-93 344.4 317 58.7
Lj6g0008289 Lotus japonicus HOM05D003820 ORTHO05D004540 1.1e-92 344.0 322 57.8
Migut.M01395 Erythranthe guttata HOM05D003820 ORTHO05D004540 2.4e-92 342.8 298 62.1
TPR.G23689 Trifolium pratense HOM05D003820 ORTHO05D004540 4.1e-92 342.0 296 60.5
ATR0712G044 Amborella trichopoda HOM05D003820 ORTHO05D004540 5.4e-92 341.7 322 58.1
CAN.G1299.7 Capsicum annuum HOM05D003820 ORTHO05D004540 7.0e-92 341.3 314 58.9
Medtr4g077490 Medicago truncatula HOM05D003820 ORTHO05D004540 1.2e-91 340.5 297 59.9
Nitab4.5_0000443g0170 Nicotiana tabacum HOM05D003820 ORTHO05D004540 1.2e-91 340.5 322 57.8
Nitab4.5_0008965g0020 Nicotiana tabacum HOM05D003820 ORTHO05D004540 1.6e-91 340.1 322 57.5
MSTRG.16027 Avicennia marina HOM05D003820 ORTHO05D004540 2.0e-91 339.7 320 57.5
Peaxi162Scf00199g00923 Petunia axillaris HOM05D003820 ORTHO05D004540 2.7e-91 339.3 322 57.1
PGSC0003DMG400009435 Solanum tuberosum HOM05D003820 ORTHO05D004540 3.5e-91 339.0 314 58.0
ECA233G4304 Erigeron canadensis HOM05D003820 ORTHO05D004540 5.9e-91 338.2 299 60.9
AUR62012795 Chenopodium quinoa HOM05D003820 ORTHO05D004540 7.8e-91 337.8 315 55.9
Sabra16G0001800 Salix brachista HOM05D003820 ORTHO05D004540 7.8e-91 337.8 322 57.1
Sabra16G0016300 Salix brachista HOM05D003820 ORTHO05D004540 7.8e-91 337.8 322 57.1
Thecc.06G233400 Theobroma cacao HOM05D003820 ORTHO05D004540 1.3e-90 337.0 322 58.1
Sopen02g017620 Solanum pennellii HOM05D003820 ORTHO05D004540 1.7e-90 336.7 319 57.1
Duzib192G0171 Durio zibethinus HOM05D003820 ORTHO05D004540 2.3e-90 336.3 322 57.8
DCAR_008620 Daucus carota HOM05D003820 ORTHO05D004540 2.9e-90 335.9 320 57.2
Solyc02g068480.3 Solanum lycopersicum HOM05D003820 ORTHO05D004540 5.0e-90 335.1 319 57.1
Lalb_Chr03g0038011 Lupinus albus HOM05D003820 ORTHO05D004540 8.6e-90 334.3 322 57.1
unitig_62.g23505 Utricularia gibba HOM05D003820 ORTHO05D004540 8.6e-90 334.3 310 57.1
ClCG01G010230 Citrullus lanatus HOM05D003820 ORTHO05D004540 1.1e-89 334.0 301 58.8
Sabra06G0008300 Salix brachista HOM05D003820 ORTHO05D004540 1.1e-89 334.0 334 55.7
Ah.14g087640 Amaranthus hybridus HOM05D003820 ORTHO05D004540 1.9e-89 333.2 310 56.8
EL10Ac8g20189 Beta vulgaris HOM05D003820 ORTHO05D004540 2.5e-89 332.8 331 54.1
Nn1g07382 Nelumbo nucifera HOM05D003820 ORTHO05D004540 2.5e-89 332.8 319 57.7
THA.LOC104812993 Tarenaya hassleriana HOM05D003820 ORTHO05D004540 2.5e-89 332.8 322 56.8
AUR62021859 Chenopodium quinoa HOM05D003820 ORTHO05D004540 4.3e-89 332.0 315 55.2
Lsat_1_v5_gn_7_13661 Lactuca sativa HOM05D003820 ORTHO05D004540 4.3e-89 332.0 307 59.0
Duzib235G0001 Durio zibethinus HOM05D003820 ORTHO05D004540 9.5e-89 330.9 322 57.5
Gohir.A06G205300 Gossypium hirsutum HOM05D003820 ORTHO05D004540 1.2e-88 330.5 322 57.1
COL.COLO4_19462 Corchorus olitorius HOM05D003820 ORTHO05D004540 1.6e-88 330.1 322 56.5
Gorai.010G250000 Gossypium raimondii HOM05D003820 ORTHO05D004540 2.8e-88 329.3 322 57.5
Aa31LG6G4450 Aethionema arabicum HOM05D003820 ORTHO05D004540 3.6e-88 328.9 301 57.8
Mapoly0061s0070 Marchantia polymorpha HOM05D003820 ORTHO05D004540 1.4e-87 327.0 321 56.4
Gohir.D06G159900 Gossypium hirsutum HOM05D003820 ORTHO05D004540 1.8e-87 326.6 322 56.2
Gorai.010G186600 Gossypium raimondii HOM05D003820 ORTHO05D004540 1.8e-87 326.6 322 56.2
Gohir.A06G153180 Gossypium hirsutum HOM05D003820 ORTHO05D004540 6.8e-87 324.7 322 55.6
Sp7g20480 Schrenkiella parvula HOM05D003820 ORTHO05D004540 6.8e-87 324.7 297 59.6
Pp3c2_2850 Physcomitrium patens HOM05D003820 ORTHO05D004540 8.9e-87 324.3 320 53.8
BcaNung01693 Brassica carinata HOM05D003820 ORTHO05D004540 1.5e-86 323.6 296 59.1
BcaNung02500 Brassica carinata HOM05D003820 ORTHO05D004540 1.5e-86 323.6 297 58.9
arahy.Tifrunner.gnm1.ann1.7FS7F8 Arachis hypogaea HOM05D003820 ORTHO05D004540 2.0e-86 323.2 309 57.0
HPP92_017772 Vanilla planifolia HOM05D003820 ORTHO05D004540 2.0e-86 323.2 318 54.4
COL.COLO4_14642 Corchorus olitorius HOM05D003820 ORTHO05D004540 4.4e-86 322.0 298 61.1
Hma1.2p1_2009F.1_g310970 Hydrangea macrophylla HOM05D003820 ORTHO05D004540 5.7e-86 321.6 316 54.7
A03p53480 Brassica napus HOM05D003820 ORTHO05D004540 7.5e-86 321.2 297 58.6
C07p51810 Brassica napus HOM05D003820 ORTHO05D004540 9.8e-86 320.9 297 58.6
BolC7t45683H Brassica oleracea HOM05D003820 ORTHO05D004540 9.8e-86 320.9 297 58.6
SMO118G0007 Selaginella moellendorffii HOM05D003820 ORTHO05D004540 1.3e-85 320.5 297 57.6
Carub.0007s1895 Capsella rubella HOM05D003820 ORTHO05D004540 1.7e-85 320.1 297 58.6
Medtr4g077320 Medicago truncatula HOM05D003820 ORTHO05D004540 2.2e-85 319.7 312 56.1
AL7G31260 Arabidopsis lyrata HOM05D003820 ORTHO05D004540 3.7e-85 318.9 297 57.9
C01p16620 Brassica napus HOM05D003820 ORTHO05D004540 3.7e-85 318.9 297 58.6
BolC1t01609H Brassica oleracea HOM05D003820 ORTHO05D004540 3.7e-85 318.9 297 58.6
BraA03t14414Z Brassica rapa HOM05D003820 ORTHO05D004540 4.9e-85 318.5 297 58.2
A01p13710 Brassica napus HOM05D003820 ORTHO05D004540 8.3e-85 317.8 297 58.2
BraA01t01316Z Brassica rapa HOM05D003820 ORTHO05D004540 8.3e-85 317.8 297 58.2
AT4G22285 Arabidopsis thaliana HOM05D003820 ORTHO05D004540 1.1e-84 317.4 297 57.9
Thhalv10024723m.g Eutrema salsugineum HOM05D003820 ORTHO05D004540 1.4e-84 317.0 297 57.9
SHI24460 Sapria himalayana HOM05D003820 ORTHO05D004540 1.4e-84 317.0 316 55.4
Hund23407 Selenicereus undatus HOM05D003820 ORTHO05D004540 5.4e-84 315.1 362 50.3
BraA06t24699Z Brassica rapa HOM05D003820 ORTHO05D004540 7.0e-84 314.7 290 58.3
AT4G22350 Arabidopsis thaliana HOM05D003820 ORTHO05D004540 1.2e-83 313.9 297 57.6
A06p15880 Brassica napus HOM05D003820 ORTHO05D004540 1.2e-83 313.9 290 57.9
CARHR229260 Cardamine hirsuta HOM05D003820 ORTHO05D004540 3.5e-83 312.4 297 56.2
SGA_v2.0_scaffold4G01876 Striga asiatica HOM05D003820 ORTHO05D004540 6.6e-82 308.1 305 56.1
CBR_g53671 Chara braunii HOM05D003820 ORTHO05D004540 8.6e-82 307.8 306 52.9
AagrBONN_evm.TU.Sc2ySwM_344.5496 Anthoceros agrestis HOM05D003820 ORTHO05D004540 1.5e-81 307.0 323 52.3
Peaxi162Scf00177g00115 Petunia axillaris HOM05D003820 ORTHO05D004540 1.6e-80 303.5 301 55.8
Nitab4.5_0001735g0140 Nicotiana tabacum HOM05D003820 ORTHO05D004540 2.1e-80 303.1 322 52.2
Lj2C282T7 Lonicera japonica HOM05D003820 ORTHO05D004540 6.8e-79 298.1 300 56.0
HanXRQChr05g0129131 Helianthus annuus HOM05D003820 ORTHO05D004540 6.4e-77 291.6 301 54.5
Lj6P617T46 Lonicera japonica HOM05D003820 ORTHO05D004540 7.0e-76 288.1 301 55.1
AUR62017961 Chenopodium quinoa HOM05D003820 ORTHO05D004540 2.0e-75 286.6 263 54.8
AUR62014154 Chenopodium quinoa HOM05D003820 ORTHO05D004540 1.2e-72 277.3 284 51.8
Atru.chr1.2452 Acer truncatum HOM05D003820 ORTHO05D004540 4.7e-72 275.4 308 51.0
Actinidia11885 Actinidia chinensis HOM05D003820 ORTHO05D004540 6.2e-72 275.0 280 53.9
HanXRQChr03g0086431 Helianthus annuus HOM05D003820 ORTHO05D004540 6.2e-72 275.0 289 54.0
TPR.G33399 Trifolium pratense HOM05D003820 ORTHO05D004540 2.3e-71 273.1 281 56.2
HanXRQChr03g0086471 Helianthus annuus HOM05D003820 ORTHO05D004540 4.0e-71 272.3 289 54.3
HanXRQChr03g0086521 Helianthus annuus HOM05D003820 ORTHO05D004540 6.8e-71 271.6 289 52.2
HanXRQChr03g0086481 Helianthus annuus HOM05D003820 ORTHO05D004540 7.5e-70 268.1 289 53.6
QL10p037768 Quercus lobata HOM05D003820 ORTHO05D004540 1.7e-69 266.9 271 53.9
Peaxi162Scf00610g00120 Petunia axillaris HOM05D003820 ORTHO05D004540 8.3e-69 264.6 282 52.1
Atru.chr1.2450 Acer truncatum HOM05D003820 ORTHO05D004540 2.5e-65 253.1 260 54.6
MCO11G519 Micromonas commoda HOM05D003820 ORTHO05D004540 4.0e-63 245.7 320 44.1
Aqoxy5G01269 Aquilegia oxysepala HOM05D003820 ORTHO05D004540 6.4e-61 238.4 305 47.2
AT4G22410 Arabidopsis thaliana HOM05D003820 ORTHO05D004540 1.1e-60 237.7 251 54.2
Cre17.g721600 Chlamydomonas reinhardtii HOM05D003820 ORTHO05D004540 7.1e-60 235.0 290 46.2
CiPaw.09G102300 Carya illinoinensis HOM05D003820 ORTHO05D004540 2.4e-55 219.9 312 44.2
Psat7g171280 Pisum sativum HOM05D003820 ORTHO05D004540 1.5e-54 217.2 228 51.8
CSS0023179 Camellia sinensis var. sinensis HOM05D003820 ORTHO05D004540 2.7e-51 206.5 234 51.3
CDE04G0225 Ceratophyllum demersum HOM05D003820 ORTHO05D004540 4.0e-47 192.6 105 82.9
CDE07G0952 Ceratophyllum demersum HOM05D003820 ORTHO05D004540 4.0e-47 192.6 105 82.9
Hma1.2p1_0657F.1_g197170 Hydrangea macrophylla HOM05D003820 ORTHO05D004540 2.0e-46 190.3 105 82.9
SEGI_20748 Sequoiadendron giganteum HOM05D003820 ORTHO05D004540 1.3e-45 187.6 221 47.5
CDE04G2792 Ceratophyllum demersum HOM05D003820 ORTHO05D004540 2.2e-45 186.8 157 61.1
COL.COLO4_31885 Corchorus olitorius HOM05D003820 ORTHO05D004540 4.9e-45 185.7 207 52.7
AUR62003618 Chenopodium quinoa HOM05D003820 ORTHO05D004540 9.3e-44 181.4 242 41.7
Oeu015944.1 Olea europaea HOM05D003820 ORTHO05D004540 1.4e-39 167.5 91 83.5
Haze_26297 Corylus avellana HOM05D003820 ORTHO05D004540 3.8e-37 159.5 315 34.3
RcHm_v2.0_Chr4g0397451 Rosa chinensis HOM05D003820 ORTHO05D004540 2.3e-34 150.2 103 69.9
CDE07G1892 Ceratophyllum demersum HOM05D003820 ORTHO05D004540 3.0e-34 149.8 97 75.3
AUR62030419 Chenopodium quinoa HOM05D003820 ORTHO05D004540 2.4e-31 140.2 215 41.4
CSS0046639 Camellia sinensis var. sinensis HOM05D003820 ORTHO05D004540 6.9e-31 138.7 89 77.5
PRCOL_00000942 Prasinoderma coloniale HOM05D003820 ORTHO05D004540 1.1e-28 131.3 242 34.7
Cfa027151 Carpinus fangiana HOM05D003820 ORTHO05D004540 2.5e-28 130.2 283 32.2
Cpa.g.sc109.39 Carica papaya HOM05D003820 ORTHO05D004540 1.8e-26 124.0 89 69.7
Oeu051248.1 Olea europaea HOM05D003820 ORTHO05D004540 4.5e-22 109.4 63 81.0
Cpa.g.c38821 Carica papaya HOM05D003820 ORTHO05D004540 1.1e-20 104.8 166 39.2
Dinv07402 Davidia involucrata HOM05D003820 ORTHO05D004540 3.7e-16 89.7 49 85.7
COL.COLO4_04224 Corchorus olitorius HOM05D003820 ORTHO05D004540 6.3e-16 89.0 202 34.2
Atru.chr1.2449 Acer truncatum HOM05D003820 ORTHO05D004540 7.7e-14 82.0 43 86.0
arahy.Tifrunner.gnm1.ann1.U1Q4DS Arachis hypogaea HOM05D003820 ORTHO05D004540 1.3e-13 81.3 53 71.7
Cpa.g.sc109.41 Carica papaya HOM05D003820 ORTHO05D004540 5.0e-13 79.3 68 54.4
RcHm_v2.0_Chr4g0397461 Rosa chinensis HOM05D003820 ORTHO05D004540 9.4e-12 75.1 58 69.0
Duzib264G0116 Durio zibethinus HOM05D003820 ORTHO05D004540 6.7e-10 68.9 51 60.8
GSVIVG01037100001 Vitis vinifera HOM05D003820 ORTHO05D004540 5.7e-09 65.9 39 71.8
BolC4t27958H Brassica oleracea HOM05D001091 ORTHO05D001020 2.0e-06 57.4 209 25.8
C04p64810 Brassica napus HOM05D001091 ORTHO05D001020 2.6e-06 57.0 206 26.2


User provided reference genes

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