Gene: COL.COLO4_04224

General Information

Structural Information

  • Species Corchorus olitorius
  • Gene Identifier COL.COLO4_04224
  • Transcript Identifier COL.rna3055
  • Gene Type Coding gene
  • Location AWUE01011216.1 : 1239-3314 : positive

Gene Family Information

  • ID HOM05D003820
  • #Genes/#Species 181/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid rna3055
  • GenBank OMP10846.1
  • id gene4196
  • gene_name COLO4_04224
  • uniprot A0A1R3KUV4

Descriptions

  • Description Zinc finger, UBP-type
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016579
ISO
PLAZA Homology (enrichment)protein deubiquitination HOM05D003820
GO:0006397
ISO
PLAZA Homology (enrichment)mRNA processing HOM05D003820
GO:0000245
ISO
PLAZA Homology (enrichment)spliceosomal complex assembly HOM05D003820

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008270
IEA
GOA Databasezinc ion binding
GO:0008270
IEA
InterProzinc ion binding
GO:0004843
ISO
PLAZA Homology (enrichment)thiol-dependent deubiquitinase HOM05D003820

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001607 Zinc finger, UBP-type
IPR038765 Papain-like cysteine peptidase superfamily
IPR013083 Zinc finger, RING/FYVE/PHD-type
Mapman id Description
16.2.1.5.4 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U4/U6 U5 small nuclear ribonucleoprotein particle (snRNP).protein factor (USP39)