Gene: Carub.0007s1895

General Information

Structural Information

  • Species Capsella rubella
  • Gene Identifier Carub.0007s1895
  • Transcript Identifier Carub.0007s1895.1
  • Gene Type Coding gene
  • Location scaffold_7 : 7116244-7119125 : positive

Gene Family Information

  • ID HOM05D003820
  • #Genes/#Species 181/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Carub.0007s1895.v1.1
  • pacid 39234295
  • synonym Carubv10004538m.g

Descriptions

  • Description K12847 - U4/U6.U5 tri-snRNP-associated protein 2 (USP39, SAD1)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000245
IEA
InterProspliceosomal complex assembly
GO:0006397
IEA
InterPromRNA processing
GO:0016579
IEA
InterProprotein deubiquitination

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008270
IEA
InterProzinc ion binding
GO:0004843
IEA
InterProthiol-dependent deubiquitinase

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001607 Zinc finger, UBP-type
IPR033809 USP39
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase
IPR038765 Papain-like cysteine peptidase superfamily
Mapman id Description
16.2.1.5.4 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U4/U6 U5 small nuclear ribonucleoprotein particle (snRNP).protein factor (USP39)