Gene: Sopen02g017620

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen02g017620
  • Transcript Identifier Sopen02g017620.1
  • Gene Type Coding gene
  • Location Spenn-ch02 : 41686248-41691150 : negative

Gene Family Information

  • ID HOM05D003820
  • #Genes/#Species 181/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen02g017620.1

Descriptions

  • Description Ubiquitin C-terminal hydrolases superfamily protein | FUNCTIONS IN: ubiquitin thiolesterase activity, zinc ion binding | INVOLVED IN: ubiquitin-dependent protein catabolic process | EXPRESSED IN: male gametophyte, pollen tube | EXPRESSED DURING: L mature pollen stage, M germinated pollen stage | CONTAINS InterPro DOMAIN/s: Zinc finger, UBP-type , Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 | BEST Arabidopsis thaliana protein match is: Ubiquitin C-terminal hydrolases superfamily protein ., Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016579
IEA
InterProprotein deubiquitination
GO:0000245
IEA
InterProspliceosomal complex assembly
GO:0006397
IEA
InterPromRNA processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004843
IEA
InterProthiol-dependent deubiquitinase
GO:0008270
IEA
InterProzinc ion binding

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase
IPR001607 Zinc finger, UBP-type
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR033809 USP39
IPR038765 Papain-like cysteine peptidase superfamily
Mapman id Description
16.2.1.5.4 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U4/U6 U5 small nuclear ribonucleoprotein particle (snRNP).protein factor (USP39)