Gene: Potri.006G010100

General Information

Structural Information

Species Populus trichocarpa
Gene Identifier Potri.006G010100
Transcript Identifier Potri.006G010100.1
Gene Type Coding gene
Location Chr06 : 656283-660176 : negative

Gene Family Information

Homologous GF
Orthologous GF

ID HOM05D003820
#Genes/#Species 181/97
Phylogenetic origin

ID ORTHO05D004540
#Genes/#Species 177/97
Phylogenetic origin

Gene Duplication Information

Block Duplication Block duplicate

Labels

Identifiers

id Potri.006G010100.v4.1
pacid 42770036
synonym POPTR_0006s01170

Descriptions

Short descriptions
Ortholog descriptions

Description K12847 - U4/U6.U5 tri-snRNP-associated protein 2 (USP39, SAD1)

Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0016579	IEA	InterPro	protein deubiquitination
GO:0000245	IEA	InterPro	spliceosomal complex assembly
GO:0006397	IEA	InterPro	mRNA processing

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0008270	IEA	InterPro	zinc ion binding
GO:0004843	IEA	InterPro	thiol-dependent deubiquitinase

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR013083	Zinc finger, RING/FYVE/PHD-type
IPR038765	Papain-like cysteine peptidase superfamily
IPR001607	Zinc finger, UBP-type
IPR001394	Peptidase C19, ubiquitin carboxyl-terminal hydrolase
IPR033809	USP39

Mapman id	Description
16.2.1.5.4	RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U4/U6 U5 small nuclear ribonucleoprotein particle (snRNP).protein factor (USP39)