Gene: COL.COLO4_31885

General Information

Structural Information

  • Species Corchorus olitorius
  • Gene Identifier COL.COLO4_31885
  • Transcript Identifier COL.rna30599
  • Gene Type Coding gene
  • Location AWUE01020881.1 : 7878-9515 : negative

Gene Family Information

  • ID HOM05D003820
  • #Genes/#Species 181/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid rna30599
  • GenBank OMO64733.1
  • id gene31857
  • gene_name COLO4_31885
  • uniprot A0A1R3H305

Descriptions

  • Description Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006508
IEA
GOA Databaseproteolysis
GO:0016579
IEA
GOA Databaseprotein deubiquitination
GO:0016579
IEA
InterProprotein deubiquitination
GO:0006397
ISO
PLAZA Homology (enrichment)mRNA processing HOM05D003820
GO:0000245
ISO
PLAZA Homology (enrichment)spliceosomal complex assembly HOM05D003820

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0008234
IEA
GOA Databasecysteine-type peptidase activity
GO:0008233
IEA
GOA Databasepeptidase activity
GO:0004843
IEA
GOA Databasethiol-dependent deubiquitinase
GO:0004843
IEA
InterProthiol-dependent deubiquitinase
GO:0008270
ISO
PLAZA Homology (enrichment)zinc ion binding HOM05D003820

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase
IPR038765 Papain-like cysteine peptidase superfamily
Mapman id Description
16.2.1.5.4 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U4/U6 U5 small nuclear ribonucleoprotein particle (snRNP).protein factor (USP39)