Gene: AT4G22410

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G22410
  • Transcript Identifier AT4G22410.2
  • Gene Type Coding gene
  • Location Chr4 : 11818033-11819532 : negative

Gene Family Information

  • ID HOM05D003820
  • #Genes/#Species 181/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G22410.2
  • uniprot F4JL70

Descriptions

  • Description U4/U6.U5 tri-snRNP-associated-like protein
  • Computational description Ubiquitin C-terminal hydrolases superfamily protein; FUNCTIONS IN: ubiquitin thiolesterase activity, zinc ion binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: endomembrane system, intracellular; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, UBP-type (InterPro:IPR001607), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: Ubiquitin C-terminal hydrolases superfamily protein (TAIR:AT4G22285.1); Has 1861 Blast hits to 1844 proteins in 197 species: Archae - 0; Bacteria - 0; Metazoa - 1101; Fungi - 318; Plants - 235; Viruses - 0; Other Eukaryotes - 207 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000245
IEA
Gene Ontologyspliceosomal complex assembly
GO:0016579
IEA
Gene Ontologyprotein deubiquitination
GO:0016579
IEA
InterProprotein deubiquitination
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0006508
IEA
GOA Databaseproteolysis
GO:0008380
IEA
GOA DatabaseRNA splicing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004843
IEA
Gene Ontologythiol-dependent deubiquitinase
GO:0004843
IEA
InterProthiol-dependent deubiquitinase
GO:0008270
IEA
Gene Ontologyzinc ion binding
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0008234
IEA
GOA Databasecysteine-type peptidase activity
GO:0008233
IEA
GOA Databasepeptidase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0005681
IEA
GOA Databasespliceosomal complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR038765 Papain-like cysteine peptidase superfamily
IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase
Mapman id Description
16.2.1.5.4 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U4/U6 U5 small nuclear ribonucleoprotein particle (snRNP).protein factor (USP39)