Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G102300 Carya illinoinensis HOM05D003820 ORTHO05D004540 3.2e-234 814.7 401 100.0
CiPaw.10G077900 Carya illinoinensis HOM05D003820 ORTHO05D004540 2.8e-158 562.4 570 57.7
QL05p069714 Quercus lobata HOM05D003820 ORTHO05D004540 7.7e-156 554.3 470 64.5
Haze_06920 Corylus avellana HOM05D003820 ORTHO05D004540 5.5e-154 548.1 473 65.1
MELO3C025562.2 Cucumis melo HOM05D003820 ORTHO05D004540 3.5e-148 528.9 475 62.5
Haze_06925 Corylus avellana HOM05D003820 ORTHO05D004540 1.3e-147 526.9 445 65.8
CsaV3_1G017170 Cucumis sativus L. HOM05D003820 ORTHO05D004540 1.5e-146 523.5 475 61.9
vmacro15759 Vaccinium macrocarpon HOM05D003820 ORTHO05D004540 5.5e-146 521.5 474 61.8
Phvul.007G152400 Phaseolus vulgaris HOM05D003820 ORTHO05D004540 7.2e-146 521.2 472 61.4
Dinv07403 Davidia involucrata HOM05D003820 ORTHO05D004540 9.4e-146 520.8 473 61.5
Lj2g0013565 Lotus japonicus HOM05D003820 ORTHO05D004540 1.2e-145 520.4 472 61.7
Glyma.10G073300 Glycine max HOM05D003820 ORTHO05D004540 1.6e-145 520.0 472 61.7
Lj6g0008289 Lotus japonicus HOM05D003820 ORTHO05D004540 1.6e-145 520.0 472 61.4
Manes.01G126900 Manihot esculenta HOM05D003820 ORTHO05D004540 1.8e-144 516.5 470 61.3
TAR626G0254 Trochodendron aralioides HOM05D003820 ORTHO05D004540 2.3e-144 516.2 471 62.0
Ca_00446_v3 Cicer arietinum L. HOM05D003820 ORTHO05D004540 3.0e-144 515.8 472 61.7
PGR102G0671 Punica granatum HOM05D003820 ORTHO05D004540 5.2e-144 515.0 472 61.4
Actinidia39270 Actinidia chinensis HOM05D003820 ORTHO05D004540 1.2e-143 513.8 474 60.3
COL.COLO4_19462 Corchorus olitorius HOM05D003820 ORTHO05D004540 1.2e-143 513.8 473 61.9
Eucgr.H03283 Eucalyptus grandis HOM05D003820 ORTHO05D004540 1.2e-143 513.8 474 61.0
FvH4_3g00980 Fragaria vesca HOM05D003820 ORTHO05D004540 1.2e-143 513.8 471 61.8
FAN21G2909 Fragaria x ananassa HOM05D003820 ORTHO05D004540 1.2e-143 513.8 471 61.8
CANSAT56G3158 Cannabis sativa HOM05D003820 ORTHO05D004540 2.0e-143 513.1 474 60.8
Ciclev10004667m.g Citrus clementina HOM05D003820 ORTHO05D004540 2.6e-143 512.7 474 61.2
Potri.016G014000 Populus trichocarpa HOM05D003820 ORTHO05D004540 3.4e-143 512.3 470 61.7
VMungo0647G1639 Vigna mungo HOM05D003820 ORTHO05D004540 3.4e-143 512.3 470 61.1
Phvul.008G270100 Phaseolus vulgaris HOM05D003820 ORTHO05D004540 5.7e-143 511.5 472 60.6
FAN25G1165 Fragaria x ananassa HOM05D003820 ORTHO05D004540 7.5e-143 511.1 471 61.6
Potri.006G010100 Populus trichocarpa HOM05D003820 ORTHO05D004540 9.8e-143 510.8 470 61.1
Atru.chr1.2452 Acer truncatum HOM05D003820 ORTHO05D004540 2.8e-142 509.2 438 64.8
Glyma.13G154200 Glycine max HOM05D003820 ORTHO05D004540 2.8e-142 509.2 472 61.0
THA.LOC104812993 Tarenaya hassleriana HOM05D003820 ORTHO05D004540 2.8e-142 509.2 474 61.2
Gohir.A06G205300 Gossypium hirsutum HOM05D003820 ORTHO05D004540 3.7e-142 508.8 474 61.0
Thecc.06G233400 Theobroma cacao HOM05D003820 ORTHO05D004540 3.7e-142 508.8 474 61.4
Manes.02G083800 Manihot esculenta HOM05D003820 ORTHO05D004540 4.9e-142 508.4 469 60.8
PGR042G2289 Punica granatum HOM05D003820 ORTHO05D004540 6.3e-142 508.1 472 60.8
ATR0712G044 Amborella trichopoda HOM05D003820 ORTHO05D004540 1.1e-141 507.3 474 60.5
Lalb_Chr03g0038011 Lupinus albus HOM05D003820 ORTHO05D004540 1.1e-141 507.3 470 60.0
Prupe.4G010400 Prunus persica HOM05D003820 ORTHO05D004540 1.1e-141 507.3 472 61.4
Gorai.010G250000 Gossypium raimondii HOM05D003820 ORTHO05D004540 3.1e-141 505.8 474 60.5
Sed0023864 Sechium edule HOM05D003820 ORTHO05D004540 3.1e-141 505.8 475 60.2
Duzib235G0001 Durio zibethinus HOM05D003820 ORTHO05D004540 4.1e-141 505.4 472 61.2
Duzib192G0171 Durio zibethinus HOM05D003820 ORTHO05D004540 9.2e-141 504.2 472 60.8
Rhsim02G0099100 Rhododendron simsii HOM05D003820 ORTHO05D004540 3.5e-140 502.3 489 59.1
MD10G1331700 Malus domestica HOM05D003820 ORTHO05D004540 4.5e-140 501.9 488 59.2
Sabra06G0008300 Salix brachista HOM05D003820 ORTHO05D004540 1.7e-139 500.0 487 59.3
Gorai.010G186600 Gossypium raimondii HOM05D003820 ORTHO05D004540 3.8e-139 498.8 472 60.6
DCAR_008620 Daucus carota HOM05D003820 ORTHO05D004540 5.0e-139 498.4 473 59.4
Aqoxy3G02484 Aquilegia oxysepala HOM05D003820 ORTHO05D004540 1.5e-138 496.9 470 61.1
Gohir.A06G153180 Gossypium hirsutum HOM05D003820 ORTHO05D004540 1.5e-138 496.9 472 60.2
Gohir.D06G159900 Gossypium hirsutum HOM05D003820 ORTHO05D004540 1.9e-138 496.5 472 60.4
Nitab4.5_0008965g0020 Nicotiana tabacum HOM05D003820 ORTHO05D004540 3.3e-138 495.7 473 59.6
Os09g0407900 Oryza sativa ssp. japonica HOM05D003820 ORTHO05D004540 3.3e-138 495.7 480 58.8
MSTRG.16027 Avicennia marina HOM05D003820 ORTHO05D004540 7.3e-138 494.6 474 59.9
Peaxi162Scf00199g00923 Petunia axillaris HOM05D003820 ORTHO05D004540 9.5e-138 494.2 471 59.7
Sabra16G0001800 Salix brachista HOM05D003820 ORTHO05D004540 1.2e-137 493.8 486 59.1
Sabra16G0016300 Salix brachista HOM05D003820 ORTHO05D004540 1.2e-137 493.8 486 59.1
CAN.G1299.7 Capsicum annuum HOM05D003820 ORTHO05D004540 2.8e-137 492.7 473 59.0
MD05G1357700 Malus domestica HOM05D003820 ORTHO05D004540 2.8e-137 492.7 488 58.4
Nitab4.5_0000443g0170 Nicotiana tabacum HOM05D003820 ORTHO05D004540 3.6e-137 492.3 473 59.2
Lj2A261T37 Lonicera japonica HOM05D003820 ORTHO05D004540 5.2e-136 488.4 469 59.9
PSO675G6471 Papaver somniferum HOM05D003820 ORTHO05D004540 1.2e-135 487.3 471 59.0
AUR62021859 Chenopodium quinoa HOM05D003820 ORTHO05D004540 1.5e-135 486.9 474 57.8
PGSC0003DMG400009435 Solanum tuberosum HOM05D003820 ORTHO05D004540 1.5e-135 486.9 473 57.9
Solyc02g068480.3 Solanum lycopersicum HOM05D003820 ORTHO05D004540 3.4e-135 485.7 473 57.9
Sopen02g017620 Solanum pennellii HOM05D003820 ORTHO05D004540 3.4e-135 485.7 473 57.9
Nn1g07382 Nelumbo nucifera HOM05D003820 ORTHO05D004540 1.3e-134 483.8 474 59.3
EL10Ac8g20189 Beta vulgaris HOM05D003820 ORTHO05D004540 2.2e-134 483.0 489 56.9
Medtr4g077490 Medicago truncatula HOM05D003820 ORTHO05D004540 4.9e-134 481.9 472 58.7
Zm00001eb225610 Zea mays HOM05D003820 ORTHO05D004540 6.4e-134 481.5 481 57.4
TPR.G29505 Trifolium pratense HOM05D003820 ORTHO05D004540 3.2e-133 479.2 471 58.8
Ah.14g087640 Amaranthus hybridus HOM05D003820 ORTHO05D004540 1.2e-132 477.2 473 57.7
unitig_62.g23505 Utricularia gibba HOM05D003820 ORTHO05D004540 2.7e-132 476.1 473 58.1
HPP92_017772 Vanilla planifolia HOM05D003820 ORTHO05D004540 3.5e-132 475.7 482 56.8
Hund23407 Selenicereus undatus HOM05D003820 ORTHO05D004540 1.3e-131 473.8 515 54.6
Lsat_1_v5_gn_7_13661 Lactuca sativa HOM05D003820 ORTHO05D004540 6.6e-131 471.5 473 58.1
Migut.M01395 Erythranthe guttata HOM05D003820 ORTHO05D004540 2.5e-130 469.5 472 58.1
ECA233G4304 Erigeron canadensis HOM05D003820 ORTHO05D004540 3.3e-130 469.2 472 57.8
AUR62012795 Chenopodium quinoa HOM05D003820 ORTHO05D004540 7.3e-130 468.0 446 58.5
Pp3c2_2850 Physcomitrium patens HOM05D003820 ORTHO05D004540 9.5e-130 467.6 473 56.9
Mapoly0061s0070 Marchantia polymorpha HOM05D003820 ORTHO05D004540 6.2e-129 464.9 491 56.0
Cc09_g00870 Coffea canephora HOM05D003820 ORTHO05D004540 3.1e-128 462.6 445 60.2
SGA_v2.0_scaffold4G01876 Striga asiatica HOM05D003820 ORTHO05D004540 3.1e-128 462.6 459 58.8
PSO541G5704 Papaver somniferum HOM05D003820 ORTHO05D004540 6.8e-128 461.5 446 59.2
Sc17g0007740 Simmondsia chinensis HOM05D003820 ORTHO05D004540 3.4e-127 459.1 448 58.5
TPR.G23689 Trifolium pratense HOM05D003820 ORTHO05D004540 3.4e-127 459.1 505 54.7
COL.COLO4_14642 Corchorus olitorius HOM05D003820 ORTHO05D004540 1.9e-125 453.4 506 56.3
arahy.Tifrunner.gnm1.ann1.7FS7F8 Arachis hypogaea HOM05D003820 ORTHO05D004540 2.4e-125 453.0 450 58.4
SMO118G0007 Selaginella moellendorffii HOM05D003820 ORTHO05D004540 4.1e-125 452.2 472 56.1
SHI24460 Sapria himalayana HOM05D003820 ORTHO05D004540 2.0e-124 449.9 465 57.0
FvH4_6g03150 Fragaria vesca HOM05D003820 ORTHO05D004540 1.7e-123 446.8 509 52.5
BcaNung01693 Brassica carinata HOM05D003820 ORTHO05D004540 2.3e-123 446.4 522 52.7
BcaNung02500 Brassica carinata HOM05D003820 ORTHO05D004540 2.5e-122 443.0 474 55.3
BraA01t01316Z Brassica rapa HOM05D003820 ORTHO05D004540 3.3e-122 442.6 490 54.3
A01p13710 Brassica napus HOM05D003820 ORTHO05D004540 5.6e-122 441.8 474 55.3
C01p16620 Brassica napus HOM05D003820 ORTHO05D004540 5.6e-122 441.8 474 55.3
BolC1t01609H Brassica oleracea HOM05D003820 ORTHO05D004540 5.6e-122 441.8 474 55.3
Hma1.2p1_2009F.1_g310970 Hydrangea macrophylla HOM05D003820 ORTHO05D004540 7.3e-122 441.4 446 56.5
Sp7g20480 Schrenkiella parvula HOM05D003820 ORTHO05D004540 7.3e-122 441.4 474 55.5
AL7G31260 Arabidopsis lyrata HOM05D003820 ORTHO05D004540 9.5e-122 441.0 473 55.4
C07p51810 Brassica napus HOM05D003820 ORTHO05D004540 1.6e-121 440.3 474 55.1
BolC7t45683H Brassica oleracea HOM05D003820 ORTHO05D004540 1.6e-121 440.3 474 55.1
CBR_g53671 Chara braunii HOM05D003820 ORTHO05D004540 2.8e-121 439.5 463 55.1
A03p53480 Brassica napus HOM05D003820 ORTHO05D004540 3.6e-121 439.1 501 53.3
AT4G22350 Arabidopsis thaliana HOM05D003820 ORTHO05D004540 8.1e-121 438.0 474 55.1
Carub.0007s1895 Capsella rubella HOM05D003820 ORTHO05D004540 8.1e-121 438.0 472 55.1
Thhalv10024723m.g Eutrema salsugineum HOM05D003820 ORTHO05D004540 1.1e-120 437.6 473 55.0
BraA03t14414Z Brassica rapa HOM05D003820 ORTHO05D004540 1.4e-120 437.2 501 53.1
HanXRQChr05g0129131 Helianthus annuus HOM05D003820 ORTHO05D004540 4.0e-120 435.6 463 56.4
AT4G22285 Arabidopsis thaliana HOM05D003820 ORTHO05D004540 1.2e-119 434.1 472 54.9
Nitab4.5_0001735g0140 Nicotiana tabacum HOM05D003820 ORTHO05D004540 1.2e-119 434.1 467 53.3
Lj2C282T7 Lonicera japonica HOM05D003820 ORTHO05D004540 1.5e-119 433.7 465 55.7
QL10p037768 Quercus lobata HOM05D003820 ORTHO05D004540 3.4e-119 432.6 339 67.8
ClCG01G010230 Citrullus lanatus HOM05D003820 ORTHO05D004540 6.4e-118 428.3 379 63.1
FAN14G5460 Fragaria x ananassa HOM05D003820 ORTHO05D004540 6.4e-118 428.3 508 50.8
Medtr4g077320 Medicago truncatula HOM05D003820 ORTHO05D004540 2.4e-117 426.4 489 53.0
A06p15880 Brassica napus HOM05D003820 ORTHO05D004540 7.3e-114 414.8 471 53.5
AagrBONN_evm.TU.Sc2ySwM_344.5496 Anthoceros agrestis HOM05D003820 ORTHO05D004540 1.6e-113 413.7 441 55.1
BraA06t24699Z Brassica rapa HOM05D003820 ORTHO05D004540 1.6e-113 413.7 471 53.3
Aa31LG6G4450 Aethionema arabicum HOM05D003820 ORTHO05D004540 2.8e-113 412.9 443 54.6
Gohir.D06G216200 Gossypium hirsutum HOM05D003820 ORTHO05D004540 3.6e-113 412.5 468 53.0
Peaxi162Scf00177g00115 Petunia axillaris HOM05D003820 ORTHO05D004540 3.6e-113 412.5 473 53.3
RcHm_v2.0_Chr5g0001511 Rosa chinensis HOM05D003820 ORTHO05D004540 3.1e-112 409.5 365 63.3
Lj6P617T46 Lonicera japonica HOM05D003820 ORTHO05D004540 4.4e-111 405.6 456 53.5
FAN09G3292 Fragaria x ananassa HOM05D003820 ORTHO05D004540 9.2e-109 397.9 486 50.6
CARHR229260 Cardamine hirsuta HOM05D003820 ORTHO05D004540 3.6e-105 386.0 444 52.5
HanXRQChr03g0086431 Helianthus annuus HOM05D003820 ORTHO05D004540 1.4e-104 384.0 475 49.9
Peaxi162Scf00610g00120 Petunia axillaris HOM05D003820 ORTHO05D004540 1.8e-104 383.6 432 52.1
HanXRQChr03g0086471 Helianthus annuus HOM05D003820 ORTHO05D004540 5.2e-104 382.1 472 50.2
HanXRQChr03g0086481 Helianthus annuus HOM05D003820 ORTHO05D004540 7.6e-103 378.3 472 50.0
Psat7g171280 Pisum sativum HOM05D003820 ORTHO05D004540 3.8e-102 375.9 337 62.6
Actinidia11885 Actinidia chinensis HOM05D003820 ORTHO05D004540 9.3e-101 371.3 335 61.8
FAN02G3088 Fragaria x ananassa HOM05D003820 ORTHO05D004540 6.6e-99 365.2 384 55.2
TPR.G33399 Trifolium pratense HOM05D003820 ORTHO05D004540 8.7e-99 364.8 460 51.5
CSS0023179 Camellia sinensis var. sinensis HOM05D003820 ORTHO05D004540 5.3e-96 355.5 324 62.0
HanXRQChr03g0086521 Helianthus annuus HOM05D003820 ORTHO05D004540 4.2e-93 345.9 421 49.9
CDE04G0225 Ceratophyllum demersum HOM05D003820 ORTHO05D004540 2.4e-85 320.1 315 59.0
Atru.chr1.2450 Acer truncatum HOM05D003820 ORTHO05D004540 1.1e-82 311.2 331 56.5
CDE07G0952 Ceratophyllum demersum HOM05D003820 ORTHO05D004540 1.9e-82 310.5 301 59.1
AUR62014154 Chenopodium quinoa HOM05D003820 ORTHO05D004540 7.4e-82 308.5 454 43.2
AUR62017961 Chenopodium quinoa HOM05D003820 ORTHO05D004540 2.5e-77 293.5 455 41.8
MCO11G519 Micromonas commoda HOM05D003820 ORTHO05D004540 1.9e-74 283.9 491 38.9
SEGI_20748 Sequoiadendron giganteum HOM05D003820 ORTHO05D004540 5.0e-70 269.2 228 66.7
Aqoxy5G01269 Aquilegia oxysepala HOM05D003820 ORTHO05D004540 1.2e-68 264.6 414 43.0
Hma1.2p1_0657F.1_g197170 Hydrangea macrophylla HOM05D003820 ORTHO05D004540 7.4e-66 255.4 223 62.8
AT4G22410 Arabidopsis thaliana HOM05D003820 ORTHO05D004540 1.4e-61 241.1 274 54.4
CDE04G2792 Ceratophyllum demersum HOM05D003820 ORTHO05D004540 1.1e-58 231.5 231 56.3
Cre17.g721600 Chlamydomonas reinhardtii HOM05D003820 ORTHO05D004540 8.2e-57 225.3 367 39.2
Oeu015944.1 Olea europaea HOM05D003820 ORTHO05D004540 9.1e-56 221.9 228 58.8
FAN05G3144 Fragaria x ananassa HOM05D003820 ORTHO05D004540 2.2e-54 217.2 312 44.2
FAN05G4407 Fragaria x ananassa HOM05D003820 ORTHO05D004540 2.2e-54 217.2 312 44.2
Cpa.g.c38821 Carica papaya HOM05D003820 ORTHO05D004540 6.5e-54 215.7 171 67.8
COL.COLO4_04224 Corchorus olitorius HOM05D003820 ORTHO05D004540 6.5e-54 215.7 319 43.9
Haze_26297 Corylus avellana HOM05D003820 ORTHO05D004540 7.2e-53 212.2 465 32.9
Cfa027151 Carpinus fangiana HOM05D003820 ORTHO05D004540 3.8e-46 189.9 469 30.7
AUR62003618 Chenopodium quinoa HOM05D003820 ORTHO05D004540 2.0e-42 177.6 353 36.5
AUR62030419 Chenopodium quinoa HOM05D003820 ORTHO05D004540 2.0e-42 177.6 342 37.1
Cpa.g.sc109.41 Carica papaya HOM05D003820 ORTHO05D004540 3.2e-37 160.2 129 65.1
PRCOL_00000942 Prasinoderma coloniale HOM05D003820 ORTHO05D004540 5.5e-37 159.5 466 30.0
COL.COLO4_31885 Corchorus olitorius HOM05D003820 ORTHO05D004540 4.7e-36 156.4 213 47.4
RcHm_v2.0_Chr4g0397451 Rosa chinensis HOM05D003820 ORTHO05D004540 3.0e-35 153.7 201 48.8
Atru.chr1.2449 Acer truncatum HOM05D003820 ORTHO05D004540 6.8e-35 152.5 187 47.6
CDE07G1892 Ceratophyllum demersum HOM05D003820 ORTHO05D004540 4.8e-33 146.4 152 53.3
Cpa.g.sc109.39 Carica papaya HOM05D003820 ORTHO05D004540 1.7e-30 137.9 146 55.5
CSS0046639 Camellia sinensis var. sinensis HOM05D003820 ORTHO05D004540 1.1e-29 135.2 146 54.1
Dinv07402 Davidia involucrata HOM05D003820 ORTHO05D004540 4.1e-24 116.7 89 68.5
Duzib264G0116 Durio zibethinus HOM05D003820 ORTHO05D004540 1.2e-23 115.2 120 53.3
Oeu051248.1 Olea europaea HOM05D003820 ORTHO05D004540 2.5e-21 107.5 89 62.9
ClCG01G010210 Citrullus lanatus HOM05D003820 ORTHO05D004540 5.6e-21 106.3 105 56.2
RcHm_v2.0_Chr5g0001501 Rosa chinensis HOM05D003820 ORTHO05D004540 1.2e-20 105.1 104 55.8
SEGI_26834 Sequoiadendron giganteum HOM05D003820 ORTHO05D004540 5.7e-18 96.3 100 54.0
arahy.Tifrunner.gnm1.ann1.U1Q4DS Arachis hypogaea HOM05D003820 ORTHO05D004540 5.0e-14 83.2 59 72.9
COL.COLO4_11384 Corchorus olitorius HOM05D002880 ORTHO05D003450 4.9e-09 66.6 55 60.0
GSVIVG01037100001 Vitis vinifera HOM05D003820 ORTHO05D004540 9.2e-08 62.4 87 43.7
COL.COLO4_07903 Corchorus olitorius HOM05D003820 ORTHO05D004540 4.6e-07 60.1 130 35.4


User provided reference genes

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