Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa027151 Carpinus fangiana HOM05D003820 ORTHO05D004540 0.0e+00 1124.0 568 100.0
Sed0023864 Sechium edule HOM05D003820 ORTHO05D004540 1.0e-105 388.3 485 44.1
MELO3C025562.2 Cucumis melo HOM05D003820 ORTHO05D004540 2.3e-105 387.1 460 44.3
CsaV3_1G017170 Cucumis sativus L. HOM05D003820 ORTHO05D004540 3.9e-105 386.3 461 44.9
PSO675G6471 Papaver somniferum HOM05D003820 ORTHO05D004540 3.9e-105 386.3 449 45.0
Ah.14g087640 Amaranthus hybridus HOM05D003820 ORTHO05D004540 5.1e-105 386.0 458 45.6
Aqoxy3G02484 Aquilegia oxysepala HOM05D003820 ORTHO05D004540 5.1e-105 386.0 456 44.3
CBR_g53671 Chara braunii HOM05D003820 ORTHO05D004540 1.1e-104 384.8 476 43.9
ECA233G4304 Erigeron canadensis HOM05D003820 ORTHO05D004540 1.1e-104 384.8 453 44.6
Duzib192G0171 Durio zibethinus HOM05D003820 ORTHO05D004540 1.5e-104 384.4 468 43.8
Rhsim02G0099100 Rhododendron simsii HOM05D003820 ORTHO05D004540 1.5e-104 384.4 452 44.9
THA.LOC104812993 Tarenaya hassleriana HOM05D003820 ORTHO05D004540 1.5e-104 384.4 467 44.3
Gohir.A06G205300 Gossypium hirsutum HOM05D003820 ORTHO05D004540 2.6e-104 383.6 468 43.2
unitig_62.g23505 Utricularia gibba HOM05D003820 ORTHO05D004540 3.3e-104 383.3 453 44.2
ATR0712G044 Amborella trichopoda HOM05D003820 ORTHO05D004540 5.7e-104 382.5 493 42.4
Mapoly0061s0070 Marchantia polymorpha HOM05D003820 ORTHO05D004540 5.7e-104 382.5 516 40.5
TAR626G0254 Trochodendron aralioides HOM05D003820 ORTHO05D004540 1.3e-103 381.3 466 43.6
EL10Ac8g20189 Beta vulgaris HOM05D003820 ORTHO05D004540 1.7e-103 380.9 464 43.3
PGR102G0671 Punica granatum HOM05D003820 ORTHO05D004540 1.7e-103 380.9 497 43.5
vmacro15759 Vaccinium macrocarpon HOM05D003820 ORTHO05D004540 2.2e-103 380.6 466 43.6
Pp3c2_2850 Physcomitrium patens HOM05D003820 ORTHO05D004540 2.8e-103 380.2 535 40.4
SMO118G0007 Selaginella moellendorffii HOM05D003820 ORTHO05D004540 2.8e-103 380.2 472 43.4
Actinidia39270 Actinidia chinensis HOM05D003820 ORTHO05D004540 3.7e-103 379.8 465 43.9
CiPaw.10G077900 Carya illinoinensis HOM05D003820 ORTHO05D004540 3.7e-103 379.8 467 43.7
Dinv07403 Davidia involucrata HOM05D003820 ORTHO05D004540 3.7e-103 379.8 467 43.9
AUR62021859 Chenopodium quinoa HOM05D003820 ORTHO05D004540 4.8e-103 379.4 456 43.6
Gorai.010G250000 Gossypium raimondii HOM05D003820 ORTHO05D004540 4.8e-103 379.4 468 43.4
Lj2g0013565 Lotus japonicus HOM05D003820 ORTHO05D004540 4.8e-103 379.4 467 43.3
DCAR_008620 Daucus carota HOM05D003820 ORTHO05D004540 6.3e-103 379.0 466 43.6
Thecc.06G233400 Theobroma cacao HOM05D003820 ORTHO05D004540 6.3e-103 379.0 554 40.8
Peaxi162Scf00199g00923 Petunia axillaris HOM05D003820 ORTHO05D004540 8.2e-103 378.6 467 44.3
Lsat_1_v5_gn_7_13661 Lactuca sativa HOM05D003820 ORTHO05D004540 1.1e-102 378.3 455 44.0
Nitab4.5_0008965g0020 Nicotiana tabacum HOM05D003820 ORTHO05D004540 1.1e-102 378.3 466 43.8
PGR042G2289 Punica granatum HOM05D003820 ORTHO05D004540 1.1e-102 378.3 492 43.1
CAN.G1299.7 Capsicum annuum HOM05D003820 ORTHO05D004540 1.4e-102 377.9 459 44.7
Haze_06920 Corylus avellana HOM05D003820 ORTHO05D004540 1.4e-102 377.9 467 42.8
Sopen02g017620 Solanum pennellii HOM05D003820 ORTHO05D004540 1.4e-102 377.9 459 44.4
MSTRG.16027 Avicennia marina HOM05D003820 ORTHO05D004540 2.4e-102 377.1 516 42.1
Manes.02G083800 Manihot esculenta HOM05D003820 ORTHO05D004540 2.4e-102 377.1 462 43.1
Nitab4.5_0000443g0170 Nicotiana tabacum HOM05D003820 ORTHO05D004540 3.1e-102 376.7 466 43.8
COL.COLO4_19462 Corchorus olitorius HOM05D003820 ORTHO05D004540 5.3e-102 375.9 544 40.8
Potri.006G010100 Populus trichocarpa HOM05D003820 ORTHO05D004540 5.3e-102 375.9 479 43.0
PGSC0003DMG400009435 Solanum tuberosum HOM05D003820 ORTHO05D004540 5.3e-102 375.9 459 44.2
Lj2A261T37 Lonicera japonica HOM05D003820 ORTHO05D004540 7.0e-102 375.6 452 44.0
Solyc02g068480.3 Solanum lycopersicum HOM05D003820 ORTHO05D004540 7.0e-102 375.6 459 44.2
Zm00001eb225610 Zea mays HOM05D003820 ORTHO05D004540 9.1e-102 375.2 539 39.1
Haze_26297 Corylus avellana HOM05D003820 ORTHO05D004540 1.5e-101 374.4 458 42.4
MD10G1331700 Malus domestica HOM05D003820 ORTHO05D004540 2.0e-101 374.0 461 43.6
Ciclev10004667m.g Citrus clementina HOM05D003820 ORTHO05D004540 2.6e-101 373.6 463 43.0
Gorai.010G186600 Gossypium raimondii HOM05D003820 ORTHO05D004540 2.6e-101 373.6 570 39.6
MD05G1357700 Malus domestica HOM05D003820 ORTHO05D004540 2.6e-101 373.6 461 42.5
Manes.01G126900 Manihot esculenta HOM05D003820 ORTHO05D004540 2.6e-101 373.6 467 43.3
Medtr4g077490 Medicago truncatula HOM05D003820 ORTHO05D004540 2.6e-101 373.6 453 44.2
Lalb_Chr03g0038011 Lupinus albus HOM05D003820 ORTHO05D004540 3.5e-101 373.2 562 40.0
QL05p069714 Quercus lobata HOM05D003820 ORTHO05D004540 3.5e-101 373.2 467 42.2
PSO541G5704 Papaver somniferum HOM05D003820 ORTHO05D004540 4.5e-101 372.9 441 44.7
Phvul.008G270100 Phaseolus vulgaris HOM05D003820 ORTHO05D004540 4.5e-101 372.9 466 42.7
Prupe.4G010400 Prunus persica HOM05D003820 ORTHO05D004540 4.5e-101 372.9 461 43.0
Glyma.13G154200 Glycine max HOM05D003820 ORTHO05D004540 5.9e-101 372.5 492 41.7
CANSAT56G3158 Cannabis sativa HOM05D003820 ORTHO05D004540 7.7e-101 372.1 500 41.4
Glyma.10G073300 Glycine max HOM05D003820 ORTHO05D004540 7.7e-101 372.1 467 42.4
Os09g0407900 Oryza sativa ssp. japonica HOM05D003820 ORTHO05D004540 7.7e-101 372.1 459 41.6
Eucgr.H03283 Eucalyptus grandis HOM05D003820 ORTHO05D004540 1.0e-100 371.7 468 41.9
Gohir.A06G153180 Gossypium hirsutum HOM05D003820 ORTHO05D004540 1.0e-100 371.7 550 40.2
Nn1g07382 Nelumbo nucifera HOM05D003820 ORTHO05D004540 1.3e-100 371.3 465 43.7
COL.COLO4_14642 Corchorus olitorius HOM05D003820 ORTHO05D004540 1.7e-100 370.9 457 43.3
HPP92_017772 Vanilla planifolia HOM05D003820 ORTHO05D004540 1.7e-100 370.9 462 42.6
VMungo0647G1639 Vigna mungo HOM05D003820 ORTHO05D004540 2.2e-100 370.5 494 41.5
Duzib235G0001 Durio zibethinus HOM05D003820 ORTHO05D004540 2.9e-100 370.2 544 39.7
Sabra16G0001800 Salix brachista HOM05D003820 ORTHO05D004540 2.9e-100 370.2 472 42.4
Sabra16G0016300 Salix brachista HOM05D003820 ORTHO05D004540 2.9e-100 370.2 472 42.4
AagrBONN_evm.TU.Sc2ySwM_344.5496 Anthoceros agrestis HOM05D003820 ORTHO05D004540 5.0e-100 369.4 437 45.1
Lj6g0008289 Lotus japonicus HOM05D003820 ORTHO05D004540 6.5e-100 369.0 551 39.6
Sabra06G0008300 Salix brachista HOM05D003820 ORTHO05D004540 6.5e-100 369.0 478 42.5
AL7G31260 Arabidopsis lyrata HOM05D003820 ORTHO05D004540 8.5e-100 368.6 453 43.5
Gohir.D06G159900 Gossypium hirsutum HOM05D003820 ORTHO05D004540 1.1e-99 368.2 572 39.5
C01p16620 Brassica napus HOM05D003820 ORTHO05D004540 2.5e-99 367.1 482 42.9
BolC1t01609H Brassica oleracea HOM05D003820 ORTHO05D004540 2.5e-99 367.1 482 42.9
Phvul.007G152400 Phaseolus vulgaris HOM05D003820 ORTHO05D004540 2.5e-99 367.1 493 41.4
TPR.G29505 Trifolium pratense HOM05D003820 ORTHO05D004540 2.5e-99 367.1 452 42.7
BcaNung02500 Brassica carinata HOM05D003820 ORTHO05D004540 3.2e-99 366.7 451 43.5
MCO11G519 Micromonas commoda HOM05D003820 ORTHO05D004540 3.2e-99 366.7 487 42.1
Carub.0007s1895 Capsella rubella HOM05D003820 ORTHO05D004540 5.5e-99 365.9 454 43.4
AUR62012795 Chenopodium quinoa HOM05D003820 ORTHO05D004540 5.5e-99 365.9 447 43.6
AT4G22285 Arabidopsis thaliana HOM05D003820 ORTHO05D004540 7.2e-99 365.5 454 43.2
AT4G22350 Arabidopsis thaliana HOM05D003820 ORTHO05D004540 7.2e-99 365.5 454 43.2
Migut.M01395 Erythranthe guttata HOM05D003820 ORTHO05D004540 7.2e-99 365.5 498 41.4
HanXRQChr05g0129131 Helianthus annuus HOM05D003820 ORTHO05D004540 7.2e-99 365.5 451 44.6
Potri.016G014000 Populus trichocarpa HOM05D003820 ORTHO05D004540 7.2e-99 365.5 552 39.3
C07p51810 Brassica napus HOM05D003820 ORTHO05D004540 9.4e-99 365.2 450 43.1
FAN21G2909 Fragaria x ananassa HOM05D003820 ORTHO05D004540 9.4e-99 365.2 452 42.3
SHI24460 Sapria himalayana HOM05D003820 ORTHO05D004540 1.2e-98 364.8 462 42.6
Ca_00446_v3 Cicer arietinum L. HOM05D003820 ORTHO05D004540 1.6e-98 364.4 495 41.4
Haze_06925 Corylus avellana HOM05D003820 ORTHO05D004540 1.6e-98 364.4 459 42.3
BcaNung01693 Brassica carinata HOM05D003820 ORTHO05D004540 2.1e-98 364.0 495 41.2
A03p53480 Brassica napus HOM05D003820 ORTHO05D004540 2.7e-98 363.6 498 41.2
Thhalv10024723m.g Eutrema salsugineum HOM05D003820 ORTHO05D004540 2.7e-98 363.6 484 41.7
FvH4_3g00980 Fragaria vesca HOM05D003820 ORTHO05D004540 2.7e-98 363.6 451 41.9
BolC7t45683H Brassica oleracea HOM05D003820 ORTHO05D004540 3.6e-98 363.2 450 42.9
BraA01t01316Z Brassica rapa HOM05D003820 ORTHO05D004540 4.7e-98 362.8 499 41.1
FAN25G1165 Fragaria x ananassa HOM05D003820 ORTHO05D004540 6.1e-98 362.5 452 42.0
Hund23407 Selenicereus undatus HOM05D003820 ORTHO05D004540 2.3e-97 360.5 507 40.6
A01p13710 Brassica napus HOM05D003820 ORTHO05D004540 3.9e-97 359.8 518 40.7
BraA03t14414Z Brassica rapa HOM05D003820 ORTHO05D004540 6.7e-97 359.0 498 40.8
Aa31LG6G4450 Aethionema arabicum HOM05D003820 ORTHO05D004540 1.5e-96 357.8 424 45.5
HanXRQChr03g0086431 Helianthus annuus HOM05D003820 ORTHO05D004540 4.4e-96 356.3 450 43.8
Sc17g0007740 Simmondsia chinensis HOM05D003820 ORTHO05D004540 4.4e-96 356.3 443 42.9
TPR.G23689 Trifolium pratense HOM05D003820 ORTHO05D004540 9.7e-96 355.1 444 42.6
Sp7g20480 Schrenkiella parvula HOM05D003820 ORTHO05D004540 2.8e-95 353.6 538 39.0
FvH4_6g03150 Fragaria vesca HOM05D003820 ORTHO05D004540 4.8e-95 352.8 477 40.7
A06p15880 Brassica napus HOM05D003820 ORTHO05D004540 3.1e-94 350.1 487 40.9
BraA06t24699Z Brassica rapa HOM05D003820 ORTHO05D004540 1.6e-93 347.8 487 40.9
Peaxi162Scf00177g00115 Petunia axillaris HOM05D003820 ORTHO05D004540 7.7e-93 345.5 453 42.6
CARHR229260 Cardamine hirsuta HOM05D003820 ORTHO05D004540 1.0e-92 345.1 479 42.0
Lj6P617T46 Lonicera japonica HOM05D003820 ORTHO05D004540 1.3e-92 344.7 452 42.0
HanXRQChr03g0086471 Helianthus annuus HOM05D003820 ORTHO05D004540 2.9e-92 343.6 490 41.4
Lj2C282T7 Lonicera japonica HOM05D003820 ORTHO05D004540 2.9e-92 343.6 460 42.8
SGA_v2.0_scaffold4G01876 Striga asiatica HOM05D003820 ORTHO05D004540 3.8e-92 343.2 465 41.5
FAN14G5460 Fragaria x ananassa HOM05D003820 ORTHO05D004540 8.5e-92 342.0 481 39.7
HanXRQChr03g0086481 Helianthus annuus HOM05D003820 ORTHO05D004540 8.5e-92 342.0 490 41.0
Hma1.2p1_2009F.1_g310970 Hydrangea macrophylla HOM05D003820 ORTHO05D004540 1.6e-90 337.8 461 40.8
Nitab4.5_0001735g0140 Nicotiana tabacum HOM05D003820 ORTHO05D004540 1.2e-88 331.6 466 40.3
Medtr4g077320 Medicago truncatula HOM05D003820 ORTHO05D004540 2.6e-88 330.5 458 40.2
Atru.chr1.2452 Acer truncatum HOM05D003820 ORTHO05D004540 8.3e-87 325.5 457 39.6
Gohir.D06G216200 Gossypium hirsutum HOM05D003820 ORTHO05D004540 1.6e-82 311.2 453 39.3
PRCOL_00000942 Prasinoderma coloniale HOM05D003820 ORTHO05D004540 3.4e-80 303.5 463 40.8
Cc09_g00870 Coffea canephora HOM05D003820 ORTHO05D004540 9.8e-80 302.0 466 36.9
QL10p037768 Quercus lobata HOM05D003820 ORTHO05D004540 6.3e-79 299.3 343 46.4
Psat7g171280 Pisum sativum HOM05D003820 ORTHO05D004540 4.1e-78 296.6 395 43.3
HanXRQChr03g0086521 Helianthus annuus HOM05D003820 ORTHO05D004540 5.4e-78 296.2 419 40.3
FAN09G3292 Fragaria x ananassa HOM05D003820 ORTHO05D004540 5.9e-77 292.7 489 36.6
AUR62014154 Chenopodium quinoa HOM05D003820 ORTHO05D004540 2.8e-74 283.9 445 36.6
Peaxi162Scf00610g00120 Petunia axillaris HOM05D003820 ORTHO05D004540 3.0e-73 280.4 458 36.0
CDE04G0225 Ceratophyllum demersum HOM05D003820 ORTHO05D004540 4.9e-71 273.1 270 51.5
CDE07G0952 Ceratophyllum demersum HOM05D003820 ORTHO05D004540 1.2e-69 268.5 320 46.9
FAN02G3088 Fragaria x ananassa HOM05D003820 ORTHO05D004540 1.2e-69 268.5 408 37.5
Aqoxy5G01269 Aquilegia oxysepala HOM05D003820 ORTHO05D004540 1.6e-69 268.1 433 38.3
CSS0023179 Camellia sinensis var. sinensis HOM05D003820 ORTHO05D004540 4.5e-69 266.5 322 45.7
AUR62017961 Chenopodium quinoa HOM05D003820 ORTHO05D004540 3.3e-67 260.4 449 34.5
TPR.G33399 Trifolium pratense HOM05D003820 ORTHO05D004540 2.8e-66 257.3 454 36.3
arahy.Tifrunner.gnm1.ann1.7FS7F8 Arachis hypogaea HOM05D003820 ORTHO05D004540 6.8e-65 252.7 547 32.4
ClCG01G010230 Citrullus lanatus HOM05D003820 ORTHO05D004540 1.9e-62 244.6 368 38.6
Cre17.g721600 Chlamydomonas reinhardtii HOM05D003820 ORTHO05D004540 5.0e-60 236.5 358 41.1
RcHm_v2.0_Chr5g0001511 Rosa chinensis HOM05D003820 ORTHO05D004540 2.1e-58 231.1 359 36.8
Actinidia11885 Actinidia chinensis HOM05D003820 ORTHO05D004540 1.5e-56 224.9 347 38.0
Hma1.2p1_0657F.1_g197170 Hydrangea macrophylla HOM05D003820 ORTHO05D004540 9.5e-51 205.7 211 49.8
Atru.chr1.2450 Acer truncatum HOM05D003820 ORTHO05D004540 3.4e-48 197.2 332 35.5
CiPaw.09G102300 Carya illinoinensis HOM05D003820 ORTHO05D004540 3.7e-47 193.7 469 30.7
AT4G22410 Arabidopsis thaliana HOM05D003820 ORTHO05D004540 6.6e-44 183.0 256 39.8
COL.COLO4_04224 Corchorus olitorius HOM05D003820 ORTHO05D004540 2.2e-39 167.9 325 33.8
Atru.chr1.2449 Acer truncatum HOM05D003820 ORTHO05D004540 6.0e-37 159.8 119 60.5
Cpa.g.sc109.41 Carica papaya HOM05D003820 ORTHO05D004540 6.6e-36 156.4 162 51.2
SEGI_20748 Sequoiadendron giganteum HOM05D003820 ORTHO05D004540 1.5e-35 155.2 226 39.4
RcHm_v2.0_Chr4g0397451 Rosa chinensis HOM05D003820 ORTHO05D004540 1.1e-33 149.1 175 43.4
ClCG01G010210 Citrullus lanatus HOM05D003820 ORTHO05D004540 5.3e-33 146.7 90 70.0
Oeu015944.1 Olea europaea HOM05D003820 ORTHO05D004540 6.9e-33 146.4 289 34.9
SEGI_26834 Sequoiadendron giganteum HOM05D003820 ORTHO05D004540 4.4e-32 143.7 90 70.0
RcHm_v2.0_Chr5g0001501 Rosa chinensis HOM05D003820 ORTHO05D004540 1.7e-31 141.7 90 67.8
FAN05G3144 Fragaria x ananassa HOM05D003820 ORTHO05D004540 4.6e-29 133.7 283 32.2
FAN05G4407 Fragaria x ananassa HOM05D003820 ORTHO05D004540 4.6e-29 133.7 283 32.2
Duzib264G0116 Durio zibethinus HOM05D003820 ORTHO05D004540 1.6e-26 125.2 118 50.8
AUR62030419 Chenopodium quinoa HOM05D003820 ORTHO05D004540 2.1e-26 124.8 272 30.9
CDE04G2792 Ceratophyllum demersum HOM05D003820 ORTHO05D004540 1.1e-25 122.5 240 31.7
COL.COLO4_31885 Corchorus olitorius HOM05D003820 ORTHO05D004540 9.0e-25 119.4 234 34.6
Cpa.g.c38821 Carica papaya HOM05D003820 ORTHO05D004540 1.5e-24 118.6 167 41.3
AUR62003618 Chenopodium quinoa HOM05D003820 ORTHO05D004540 7.6e-24 116.3 187 34.2
CDE07G1892 Ceratophyllum demersum HOM05D003820 ORTHO05D004540 2.8e-18 97.8 163 33.1
Cpa.g.sc109.39 Carica papaya HOM05D003820 ORTHO05D004540 6.9e-17 93.2 159 35.2
CSS0046639 Camellia sinensis var. sinensis HOM05D003820 ORTHO05D004540 1.2e-16 92.4 156 34.0
Oeu051248.1 Olea europaea HOM05D003820 ORTHO05D004540 5.1e-12 77.0 135 34.8
COL.COLO4_11384 Corchorus olitorius HOM05D002880 ORTHO05D003450 5.8e-08 63.5 54 57.4
CBR_g20064 Chara braunii HOM05D001091 ORTHO05D001020 7.6e-08 63.2 394 21.3
BcaB06g28879 Brassica carinata HOM05D001091 ORTHO05D001020 5.0e-07 60.5 351 23.4
Dinv07402 Davidia involucrata HOM05D003820 ORTHO05D004540 5.0e-07 60.5 115 27.8
TAR383G0569 Trochodendron aralioides HOM05D000344 ORTHO05D003478 1.9e-06 58.5 495 21.0
arahy.Tifrunner.gnm1.ann1.L0UV1J Arachis hypogaea HOM05D000344 ORTHO05D003478 3.2e-06 57.8 492 21.5
arahy.Tifrunner.gnm1.ann1.B3BHU1 Arachis hypogaea HOM05D000344 ORTHO05D003478 7.1e-06 56.6 490 22.0
BcaC02g07665 Brassica carinata HOM05D001091 ORTHO05D001020 9.3e-06 56.2 336 22.0


User provided reference genes

Program Settings