Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g47569 Brassica carinata HOM05D002341 ORTHO05D014897 1.8e-26 121.7 55 100.0
A07p45430 Brassica napus HOM05D002341 ORTHO05D014897 1.8e-26 121.7 55 100.0
C06p54260 Brassica napus HOM05D002341 ORTHO05D014897 1.8e-26 121.7 55 100.0
BolC6t40439H Brassica oleracea HOM05D002341 ORTHO05D014897 1.8e-26 121.7 55 100.0
BraA07t32047Z Brassica rapa HOM05D002341 ORTHO05D014897 3.9e-26 120.6 55 98.2
BcaB02g09158 Brassica carinata HOM05D002341 ORTHO05D003165 1.6e-16 88.6 54 75.9
BcaC02g12021 Brassica carinata HOM05D002341 ORTHO05D003165 6.2e-16 86.7 54 74.1
A05p07330 Brassica napus HOM05D002341 ORTHO05D003165 6.2e-16 86.7 54 74.1
C04p08780 Brassica napus HOM05D002341 ORTHO05D003165 6.2e-16 86.7 54 74.1
BolC4t22470H Brassica oleracea HOM05D002341 ORTHO05D003165 6.2e-16 86.7 54 74.1
BraA05t19698Z Brassica rapa HOM05D002341 ORTHO05D003165 6.2e-16 86.7 54 74.1
BcaC05g27955 Brassica carinata HOM05D002341 ORTHO05D003165 6.9e-15 83.2 54 72.2
C05p39600 Brassica napus HOM05D002341 ORTHO05D003165 6.9e-15 83.2 54 72.2
BcaNung01746 Brassica carinata HOM05D002341 ORTHO05D003165 2.6e-14 81.3 54 72.2
Carub.0002s2745 Capsella rubella HOM05D002341 ORTHO05D003165 2.6e-14 81.3 54 72.2
Sp5g35830 Schrenkiella parvula HOM05D002341 ORTHO05D003165 2.6e-14 81.3 54 72.2
Aa31LG3G3350 Aethionema arabicum HOM05D002341 ORTHO05D003165 3.4e-14 80.9 54 70.4
BcaB06g28420 Brassica carinata HOM05D002341 ORTHO05D003165 3.4e-14 80.9 54 72.2
BcaB06g28506 Brassica carinata HOM05D002341 ORTHO05D003165 3.4e-14 80.9 54 72.2
BcaC09g51361 Brassica carinata HOM05D002341 ORTHO05D003165 3.4e-14 80.9 54 72.2
A01p11740 Brassica napus HOM05D002341 ORTHO05D003165 3.4e-14 80.9 54 72.2
A04p23900 Brassica napus HOM05D002341 ORTHO05D003165 3.4e-14 80.9 54 72.2
C01p13930 Brassica napus HOM05D002341 ORTHO05D003165 3.4e-14 80.9 54 72.2
C04p60540 Brassica napus HOM05D002341 ORTHO05D003165 3.4e-14 80.9 54 72.2
BolC1t01360H Brassica oleracea HOM05D002341 ORTHO05D003165 3.4e-14 80.9 54 72.2
BolC4t27552H Brassica oleracea HOM05D002341 ORTHO05D003165 3.4e-14 80.9 54 72.2
BraA01t01116Z Brassica rapa HOM05D002341 ORTHO05D003165 3.4e-14 80.9 54 72.2
BraA04t17913Z Brassica rapa HOM05D002341 ORTHO05D003165 3.4e-14 80.9 54 72.2
AL7G40190 Arabidopsis lyrata HOM05D002341 ORTHO05D003165 5.8e-14 80.1 54 68.5
Thhalv10017992m.g Eutrema salsugineum HOM05D002341 ORTHO05D003165 5.8e-14 80.1 54 70.4
AL2G41470 Arabidopsis lyrata HOM05D002341 ORTHO05D003165 1.0e-13 79.3 54 70.4
AT1G80070 Arabidopsis thaliana HOM05D002341 ORTHO05D003165 1.0e-13 79.3 54 70.4
THA.LOC104800410 Tarenaya hassleriana HOM05D002341 ORTHO05D003165 1.0e-13 79.3 54 68.5
Thhalv10024184m.g Eutrema salsugineum HOM05D002341 ORTHO05D003165 1.3e-13 79.0 54 70.4
Gohir.A10G073101 Gossypium hirsutum HOM05D002341 ORTHO05D003165 1.3e-13 79.0 54 66.7
Gohir.D10G077825 Gossypium hirsutum HOM05D002341 ORTHO05D003165 1.3e-13 79.0 54 66.7
Gorai.011G084400 Gossypium raimondii HOM05D002341 ORTHO05D003165 1.3e-13 79.0 54 66.7
COL.COLO4_24410 Corchorus olitorius HOM05D002341 ORTHO05D003165 2.2e-13 78.2 54 66.7
CARHR074430 Cardamine hirsuta HOM05D002341 ORTHO05D003165 2.9e-13 77.8 54 68.5
THA.LOC104812513 Tarenaya hassleriana HOM05D002341 ORTHO05D003165 3.8e-13 77.4 54 66.7
Ah.01g020550 Amaranthus hybridus HOM05D002341 ORTHO05D003165 5.0e-13 77.0 54 64.8
Cc01_g01870 Coffea canephora HOM05D002341 ORTHO05D003165 5.0e-13 77.0 54 63.0
Duzib160G0553 Durio zibethinus HOM05D002341 ORTHO05D003165 5.0e-13 77.0 54 64.8
Solyc07g008880.3 Solanum lycopersicum HOM05D002341 ORTHO05D003165 5.0e-13 77.0 54 64.8
Sopen07g004810 Solanum pennellii HOM05D002341 ORTHO05D003165 5.0e-13 77.0 54 64.8
TWI75G1620 Tripterygium wilfordii HOM05D002341 ORTHO05D003165 5.0e-13 77.0 54 64.8
CAN.G147.16 Capsicum annuum HOM05D002341 ORTHO05D003165 6.5e-13 76.6 54 63.0
Dinv38126 Davidia involucrata HOM05D002341 ORTHO05D003165 6.5e-13 76.6 54 63.0
Duzib235G1417 Durio zibethinus HOM05D002341 ORTHO05D003165 6.5e-13 76.6 54 63.0
Glyma.13G366100 Glycine max HOM05D002341 ORTHO05D003165 6.5e-13 76.6 54 64.8
Glyma.15G007100 Glycine max HOM05D002341 ORTHO05D003165 6.5e-13 76.6 54 64.8
Gohir.A05G122851 Gossypium hirsutum HOM05D002341 ORTHO05D003165 6.5e-13 76.6 54 63.0
Gohir.D05G123700 Gossypium hirsutum HOM05D002341 ORTHO05D003165 6.5e-13 76.6 54 63.0
Gorai.009G127700 Gossypium raimondii HOM05D002341 ORTHO05D003165 6.5e-13 76.6 54 63.0
Lj3g0016754 Lotus japonicus HOM05D002341 ORTHO05D003165 6.5e-13 76.6 54 63.0
Lalb_Chr14g0373851 Lupinus albus HOM05D002341 ORTHO05D003165 6.5e-13 76.6 54 64.8
Lalb_Chr24g0395471 Lupinus albus HOM05D002341 ORTHO05D003165 6.5e-13 76.6 54 64.8
Nn2g12097 Nelumbo nucifera HOM05D002341 ORTHO05D003165 6.5e-13 76.6 54 61.1
Nitab4.5_0000366g0200 Nicotiana tabacum HOM05D002341 ORTHO05D003165 6.5e-13 76.6 54 63.0
Nitab4.5_0002890g0050 Nicotiana tabacum HOM05D002341 ORTHO05D003165 6.5e-13 76.6 54 63.0
Nitab4.5_0007065g0030 Nicotiana tabacum HOM05D002341 ORTHO05D003165 6.5e-13 76.6 54 63.0
Oeu005942.1 Olea europaea HOM05D002341 ORTHO05D003165 6.5e-13 76.6 54 63.0
Oeu045135.1 Olea europaea HOM05D002341 ORTHO05D003165 6.5e-13 76.6 54 63.0
Peaxi162Scf00089g00635 Petunia axillaris HOM05D002341 ORTHO05D003165 6.5e-13 76.6 54 63.0
Peaxi162Scf01838g00019 Petunia axillaris HOM05D002341 ORTHO05D003165 6.5e-13 76.6 54 63.0
Phvul.005G178600 Phaseolus vulgaris HOM05D002341 ORTHO05D003165 6.5e-13 76.6 54 64.8
PGSC0003DMG400028736 Solanum tuberosum HOM05D002341 ORTHO05D003165 6.5e-13 76.6 54 63.0
TAR383G0801 Trochodendron aralioides HOM05D002341 ORTHO05D003165 6.5e-13 76.6 54 63.0
TAR383G0916 Trochodendron aralioides HOM05D000467 ORTHO05D000379 6.5e-13 76.6 54 63.0
VMungo1080G1733 Vigna mungo HOM05D002341 ORTHO05D003165 6.5e-13 76.6 54 64.8
Atru.chr1.2928 Acer truncatum HOM05D002341 ORTHO05D003165 8.4e-13 76.3 54 64.8
arahy.Tifrunner.gnm1.ann1.8VY1P5 Arachis hypogaea HOM05D002341 ORTHO05D014897 8.4e-13 76.3 54 64.8
arahy.Tifrunner.gnm1.ann1.B7D93H Arachis hypogaea HOM05D002341 ORTHO05D003165 8.4e-13 76.3 54 64.8
arahy.Tifrunner.gnm1.ann1.DCJ864 Arachis hypogaea HOM05D002341 ORTHO05D003165 8.4e-13 76.3 54 64.8
CiPaw.01G248600 Carya illinoinensis HOM05D002341 ORTHO05D003165 8.4e-13 76.3 54 63.0
AUR62011512 Chenopodium quinoa HOM05D002341 ORTHO05D003165 8.4e-13 76.3 54 64.8
Ca_01053_v3 Cicer arietinum L. HOM05D002341 ORTHO05D003165 8.4e-13 76.3 54 63.0
Ciclev10024683m.g Citrus clementina HOM05D002341 ORTHO05D003165 8.4e-13 76.3 54 64.8
Dinv30609 Davidia involucrata HOM05D002341 ORTHO05D003165 8.4e-13 76.3 54 61.1
HanXRQChr04g0097891 Helianthus annuus HOM05D002341 ORTHO05D003165 8.4e-13 76.3 54 64.8
Medtr2g103960 Medicago truncatula HOM05D002341 ORTHO05D003165 8.4e-13 76.3 54 63.0
Psat5g302520 Pisum sativum HOM05D002341 ORTHO05D003165 8.4e-13 76.3 54 63.0
Prupe.3G223400 Prunus persica HOM05D002341 ORTHO05D003165 8.4e-13 76.3 54 61.1
PGR102G3099 Punica granatum HOM05D002341 ORTHO05D003165 8.4e-13 76.3 54 63.0
HPP92_003044 Vanilla planifolia HOM05D002341 ORTHO05D003165 8.4e-13 76.3 54 63.0
Actinidia15757 Actinidia chinensis HOM05D002341 ORTHO05D003165 1.1e-12 75.9 54 63.0
MSTRG.9422 Avicennia marina HOM05D002341 ORTHO05D003165 1.1e-12 75.9 54 63.0
Cpa.g.sc67.49 Carica papaya HOM05D002341 ORTHO05D003165 1.1e-12 75.9 54 63.0
Hma1.2p1_0017F.1_g011180 Hydrangea macrophylla HOM05D002341 ORTHO05D003165 1.1e-12 75.9 54 61.1
Lsat_1_v5_gn_1_34320 Lactuca sativa HOM05D002341 ORTHO05D003165 1.1e-12 75.9 54 63.0
Lj9C499G5 Lonicera japonica HOM05D002341 ORTHO05D003165 1.1e-12 75.9 54 63.0
Nn8g39518 Nelumbo nucifera HOM05D002341 ORTHO05D003165 1.1e-12 75.9 54 63.0
CSS0044190 Camellia sinensis var. sinensis HOM05D002341 ORTHO05D003165 1.4e-12 75.5 54 61.1
AUR62016331 Chenopodium quinoa HOM05D002341 ORTHO05D003165 1.4e-12 75.5 54 63.0
Medtr8g011150 Medicago truncatula HOM05D002341 ORTHO05D003165 1.4e-12 75.5 54 61.1
Potri.003G031900 Populus trichocarpa HOM05D002341 ORTHO05D003165 1.4e-12 75.5 54 61.1
QL05p031390 Quercus lobata HOM05D002341 ORTHO05D003165 1.4e-12 75.5 54 63.0
SalBow6G3017 Salvia bowleyana HOM05D002341 ORTHO05D003165 1.4e-12 75.5 54 61.1
SalBow6G5900 Salvia bowleyana HOM05D002341 ORTHO05D003165 1.4e-12 75.5 54 61.1
TPR.G24585 Trifolium pratense HOM05D002341 ORTHO05D003165 1.4e-12 75.5 54 63.0
TAR625G0212 Trochodendron aralioides HOM05D002341 ORTHO05D003165 1.4e-12 75.5 54 61.1
unitig_747.g21298 Utricularia gibba HOM05D002341 ORTHO05D003165 1.4e-12 75.5 54 61.1
GSVIVG01017346001 Vitis vinifera HOM05D002341 ORTHO05D003165 1.4e-12 75.5 54 61.1
CDE02G0999 Ceratophyllum demersum HOM05D002341 ORTHO05D003165 1.9e-12 75.1 54 59.3
CDE09G0407 Ceratophyllum demersum HOM05D002341 ORTHO05D003165 1.9e-12 75.1 54 59.3
ClCG09G002950 Citrullus lanatus HOM05D002341 ORTHO05D003165 1.9e-12 75.1 54 61.1
COL.COLO4_11940 Corchorus olitorius HOM05D002341 ORTHO05D003165 1.9e-12 75.1 54 63.0
MELO3C023427.2 Cucumis melo HOM05D002341 ORTHO05D003165 1.9e-12 75.1 54 61.1
CsaV3_7G032320 Cucumis sativus L. HOM05D002341 ORTHO05D003165 1.9e-12 75.1 54 61.1
DCAR_022311 Daucus carota HOM05D002341 ORTHO05D003165 1.9e-12 75.1 54 61.1
DCAR_025515 Daucus carota HOM05D002341 ORTHO05D003165 1.9e-12 75.1 54 63.0
FAN02G2239 Fragaria x ananassa HOM05D002341 ORTHO05D003165 1.9e-12 75.1 54 63.0
Rhsim08G0212600 Rhododendron simsii HOM05D002341 ORTHO05D003165 1.9e-12 75.1 54 63.0
Sed0021407 Sechium edule HOM05D002341 ORTHO05D003165 1.9e-12 75.1 54 61.1
Hund00514 Selenicereus undatus HOM05D002341 ORTHO05D003165 1.9e-12 75.1 54 63.0
Thecc.06G025500 Theobroma cacao HOM05D002341 ORTHO05D003165 1.9e-12 75.1 54 63.0
TPR.G7701 Trifolium pratense HOM05D002341 ORTHO05D003165 1.9e-12 75.1 54 63.0
vmacro19000 Vaccinium macrocarpon HOM05D002341 ORTHO05D003165 1.9e-12 75.1 54 63.0
MSTRG.4705 Avicennia marina HOM05D002341 ORTHO05D003165 2.5e-12 74.7 54 63.0
CANSAT56G2164 Cannabis sativa HOM05D002341 ORTHO05D003165 2.5e-12 74.7 54 63.0
CBR_g48660 Chara braunii HOM05D002341 ORTHO05D003165 2.5e-12 74.7 54 66.7
Migut.D01080 Erythranthe guttata HOM05D002341 ORTHO05D003165 2.5e-12 74.7 54 61.1
FvH4_6g29610 Fragaria vesca HOM05D002341 ORTHO05D003165 2.5e-12 74.7 54 61.1
FAN05G3465 Fragaria x ananassa HOM05D002341 ORTHO05D003165 2.5e-12 74.7 54 61.1
FAN09G3038 Fragaria x ananassa HOM05D002341 ORTHO05D003165 2.5e-12 74.7 54 61.1
FAN14G4930 Fragaria x ananassa HOM05D002341 ORTHO05D003165 2.5e-12 74.7 54 61.1
Manes.11G057400 Manihot esculenta HOM05D002341 ORTHO05D003165 2.5e-12 74.7 54 61.1
PSO017G1385 Papaver somniferum HOM05D002341 ORTHO05D003165 2.5e-12 74.7 54 61.1
PSO170G3007 Papaver somniferum HOM05D002341 ORTHO05D003165 2.5e-12 74.7 54 61.1
Cc00_g08660 Coffea canephora HOM05D002341 ORTHO05D003165 3.2e-12 74.3 54 61.1
MD00G1072300 Malus domestica HOM05D002341 ORTHO05D003165 3.2e-12 74.3 54 59.3
MD17G1212800 Malus domestica HOM05D002341 ORTHO05D003165 3.2e-12 74.3 54 59.3
Medtr8g010730 Medicago truncatula HOM05D002341 ORTHO05D003165 3.2e-12 74.3 54 59.3
Nitab4.5_0001200g0150 Nicotiana tabacum HOM05D002341 ORTHO05D003165 3.2e-12 74.3 54 61.1
Prupe.3G088200 Prunus persica HOM05D002341 ORTHO05D003165 3.2e-12 74.3 54 59.3
RcHm_v2.0_Chr2g0135211 Rosa chinensis HOM05D002341 ORTHO05D003165 3.2e-12 74.3 54 59.3
ATR0800G142 Amborella trichopoda HOM05D002341 ORTHO05D003165 4.2e-12 73.9 54 61.1
Carub.0007s2659 Capsella rubella HOM05D002341 ORTHO05D003165 4.2e-12 73.9 54 63.0
FAN14G1989 Fragaria x ananassa HOM05D002341 ORTHO05D003165 4.2e-12 73.9 54 64.8
Sabra03G0018200 Salix brachista HOM05D002341 ORTHO05D003165 4.2e-12 73.9 54 59.3
Sed0003553 Sechium edule HOM05D002341 ORTHO05D003165 4.2e-12 73.9 54 61.1
C04p60600 Brassica napus HOM05D002341 ORTHO05D003165 5.5e-12 73.6 56 67.9
Cfa001956 Carpinus fangiana HOM05D002341 ORTHO05D003165 5.5e-12 73.6 54 59.3
Haze_16566 Corylus avellana HOM05D002341 ORTHO05D003165 5.5e-12 73.6 54 59.3
SHI11229 Sapria himalayana HOM05D002341 ORTHO05D003165 5.5e-12 73.6 54 63.0
SMO145G0262 Selaginella moellendorffii HOM05D002341 ORTHO05D003165 5.5e-12 73.6 54 63.0
EL10Ac9g21877 Beta vulgaris HOM05D002341 ORTHO05D003165 9.3e-12 72.8 54 59.3
AL7G10650 Arabidopsis lyrata HOM05D002341 ORTHO05D003165 1.2e-11 72.4 54 61.1
Manes.04G112400 Manihot esculenta HOM05D002341 ORTHO05D003165 1.2e-11 72.4 54 59.3
RcHm_v2.0_Chr2g0160631 Rosa chinensis HOM05D002341 ORTHO05D003165 1.6e-11 72.0 54 63.0
Eucgr.F03935 Eucalyptus grandis HOM05D002341 ORTHO05D003165 2.1e-11 71.6 54 57.4
Pp3c24_20910 Physcomitrium patens HOM05D002341 ORTHO05D003165 2.1e-11 71.6 54 59.3
Pp3c8_25090 Physcomitrium patens HOM05D002341 ORTHO05D003165 2.1e-11 71.6 54 59.3
MCO02G483 Micromonas commoda HOM05D002341 ORTHO05D003165 2.7e-11 71.2 54 61.1
HanXRQChr02g0033481 Helianthus annuus HOM05D002341 ORTHO05D003165 3.5e-11 70.9 54 61.1
Aqoxy3G03781 Aquilegia oxysepala HOM05D002341 ORTHO05D003165 4.6e-11 70.5 54 57.4
AT4G38780 Arabidopsis thaliana HOM05D002341 ORTHO05D003165 7.9e-11 69.7 54 59.3
FAN09G2021 Fragaria x ananassa HOM05D002341 ORTHO05D003165 7.9e-11 69.7 54 59.3
vmacro07673 Vaccinium macrocarpon HOM05D002341 ORTHO05D014897 7.9e-11 69.7 54 57.4
SGA_v2.0_scaffold26G11346 Striga asiatica HOM05D002341 ORTHO05D003165 1.0e-10 69.3 54 59.3
Mapoly0019s0008 Marchantia polymorpha HOM05D002341 ORTHO05D003165 1.8e-10 68.6 54 57.4
Zm00001eb271550 Zea mays HOM05D002341 ORTHO05D003165 1.8e-10 68.6 54 55.6
AagrBONN_evm.TU.Sc2ySwM_362.189 Anthoceros agrestis HOM05D002341 ORTHO05D003165 2.3e-10 68.2 54 57.4
Aqoxy180s008 Aquilegia oxysepala HOM05D002341 ORTHO05D003165 2.3e-10 68.2 54 55.6
Aqoxy3G02657 Aquilegia oxysepala HOM05D002341 ORTHO05D003165 2.3e-10 68.2 54 55.6
PRCOL_00001855 Prasinoderma coloniale HOM05D002341 ORTHO05D003165 2.3e-10 68.2 54 55.6
Cre01.g016050 Chlamydomonas reinhardtii HOM05D002341 ORTHO05D003165 3.9e-10 67.4 54 55.6
MD09G1102200 Malus domestica HOM05D002341 ORTHO05D003165 3.9e-10 67.4 54 51.9
Zm00001eb375530 Zea mays HOM05D002341 ORTHO05D003165 3.9e-10 67.4 54 53.7
Haze_26409 Corylus avellana HOM05D002341 ORTHO05D003165 2.8e-08 61.2 54 51.9
FAN02G2298 Fragaria x ananassa HOM05D002341 ORTHO05D003165 1.8e-07 58.5 46 58.7
FAN05G4314 Fragaria x ananassa HOM05D002341 ORTHO05D003165 6.9e-07 56.6 49 57.1
COL.COLO4_11939 Corchorus olitorius HOM05D002341 ORTHO05D014897 1.0e-05 52.8 42 54.8


User provided reference genes

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