Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
SL01G109050
(Solanum lycopersicum)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Solanum lycopersicum | Orthologous gene family | SL01G109050 SL02G092360 | 2 |  |
| Best-Hits-and-Inparalogs(BHI)family | SL01G109050 | 1 | ||
| Tree-based ortholog | SL01G109050 | 1 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Orthologous gene family | many-to-1 | ATR_00086G00290 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR_00086G00290 | 1 | ||
| Tree-based ortholog | 1-to-1 | ATR_00086G00290 | 1 | ||
| Arabidopsis lyrata | Orthologous gene family | many-to-many | AL5G19290 AL8G32910 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AL5G19290 | 1 | ||
| Tree-based ortholog | 1-to-many | AL8G32910 AL5G19290 | 2 | ||
| Arabidopsis thaliana | Orthologous gene family | many-to-many | AT3G49880 AT5G67540 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AT5G67540 | 1 | ||
| Tree-based ortholog | 1-to-many | AT5G67540 AT3G49880 | 2 | ||
| Beta vulgaris | Orthologous gene family | many-to-1 | BV6G23640 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV6G23640 | 1 | ||
| Tree-based ortholog | 1-to-1 | BV6G23640 | 1 | ||
| Brassica rapa | Orthologous gene family | many-to-many | BR01G23960 BR06G23870 BR09G31930 | 3 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BR09G31930 | 1 | ||
| Tree-based ortholog | 1-to-many | BR06G23870 BR01G23960 BR09G31930 | 3 | ||
| Capsella rubella | Orthologous gene family | many-to-many | CRU_005G15180 CRU_008G26110 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CRU_008G26110 | 1 | ||
| Tree-based ortholog | 1-to-many | CRU_008G26110 CRU_005G15180 | 2 | ||
| Carica papaya | Orthologous gene family | many-to-1 | CP00006G00160 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00006G00160 | 1 | ||
| Citrullus lanatus | Orthologous gene family | many-to-many | CL02G12890 CL02G12910 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL02G12890 | 1 | ||
| Tree-based ortholog | 1-to-many | CL02G12910 CL02G12890 | 2 | ||
| Citrus sinensis | Orthologous gene family | many-to-1 | CS00006G00830 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS00006G00830 | 1 | ||
| Tree-based ortholog | 1-to-1 | CS00006G00830 | 1 | ||
| Cucumis melo | Orthologous gene family | many-to-many | CM00045G01940 CM00045G01960 | 2 | |
| Anchor point | N/A | CM00045G01940 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00045G01960 | 1 | ||
| Tree-based ortholog | 1-to-many | CM00045G01940 CM00045G01960 | 2 | ||
| Eucalyptus grandis | Orthologous gene family | many-to-many | EG0008G18560 EG0009G05600 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0009G05600 | 1 | ||
| Tree-based ortholog | 1-to-many | EG0008G18560 EG0009G05600 | 2 | ||
| Fragaria vesca | Orthologous gene family | many-to-1 | FV0G19340 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV0G19340 | 1 | ||
| Tree-based ortholog | 1-to-1 | FV0G19340 | 1 | ||
| Glycine max | Orthologous gene family | many-to-many | GM01G40190 GM05G22470 GM11G05100 ... | 4 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GM01G40190 GM11G05100 | 2 | ||
| Tree-based ortholog | 1-to-many | GM05G22470 GM17G17390 GM01G40190 ... | 4 | ||
| Gossypium raimondii | Orthologous gene family | many-to-many | GR03G03050 GR08G08340 GR11G21450 | 3 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GR08G08340 | 1 | ||
| Tree-based ortholog | 1-to-many | GR08G08340 GR03G03050 | 2 | ||
| Lotus japonicus | Orthologous gene family | many-to-1 | LJ2G032370 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ2G032370 | 1 | ||
| Tree-based ortholog | 1-to-1 | LJ2G032370 | 1 | ||
| Malus domestica | Orthologous gene family | many-to-many | MD00G204680 MD02G016670 MD15G023730 | 3 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | MD15G023730 MD02G016670 | 2 | ||
| Tree-based ortholog | 1-to-many | MD00G204680 MD02G016670 MD15G023730 | 3 | ||
| Manihot esculenta | Orthologous gene family | many-to-many | ME03363G00310 ME06027G00050 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ME06027G00050 | 1 | ||
| Tree-based ortholog | 1-to-1 | ME06027G00050 | 1 | ||
| Medicago truncatula | Orthologous gene family | many-to-many | MT4G097110 MT5G015460 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT5G015460 | 1 | ||
| Tree-based ortholog | 1-to-many | MT4G097110 MT5G015460 | 2 | ||
| Oryza sativa ssp. japonica | Orthologous gene family | many-to-many | OS01G65720 OS12G21789 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS12G21789 | 1 | ||
| Tree-based ortholog | 1-to-many | OS01G65720 OS12G21789 | 2 | ||
| Physcomitrella patens | Orthologous gene family | many-to-many | PP00016G01020 PP00410G00060 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PP00016G01020 PP00410G00060 | 2 | ||
| Tree-based ortholog | 1-to-many | PP00016G01020 PP00410G00060 | 2 | ||
| Populus trichocarpa | Orthologous gene family | many-to-1 | PT05G14880 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PT05G14880 | 1 | ||
| Tree-based ortholog | 1-to-1 | PT05G14880 | 1 | ||
| Prunus persica | Orthologous gene family | many-to-1 | PPE_006G22960 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_006G22960 | 1 | ||
| Tree-based ortholog | 1-to-1 | PPE_006G22960 | 1 | ||
| Ricinus communis | Orthologous gene family | many-to-1 | RC29661G00260 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC29661G00260 | 1 | ||
| Tree-based ortholog | 1-to-1 | RC29661G00260 | 1 | ||
| Solanum tuberosum | Orthologous gene family | many-to-many | ST01G046370 ST02G030860 | 2 | |
| Anchor point | N/A | ST01G046370 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST01G046370 | 1 | ||
| Tree-based ortholog | 1-to-1 | ST01G046370 | 1 | ||
| Thellungiella parvula | Orthologous gene family | many-to-many | TP2G29110 TP5G12230 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP5G12230 | 1 | ||
| Tree-based ortholog | 1-to-many | TP2G29110 TP5G12230 | 2 | ||
| Theobroma cacao | Orthologous gene family | many-to-1 | TC0001G07000 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TC0001G07000 | 1 | ||
| Tree-based ortholog | 1-to-1 | TC0001G07000 | 1 | ||
| Vitis vinifera | Orthologous gene family | many-to-1 | VV07G00020 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV07G00020 | 1 | ||
| Tree-based ortholog | 1-to-1 | VV07G00020 | 1 | ||
| Zea mays | Orthologous gene family | many-to-many | ZM01G07140 ZM03G25170 ZM09G26520 | 3 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | ZM01G07140 ZM09G26520 | 2 | ||
| Tree-based ortholog | 1-to-many | ZM03G25170 ZM01G07140 ZM09G26520 | 3 |