Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
PP00058G01210
(Physcomitrella patens)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Physcomitrella patens | Orthologous gene family | PP00058G01210 PP00150G00460 PP00275G00510 ... | 4 |  |
| Best-Hits-and-Inparalogs(BHI)family | PP00275G00510 PP00058G01210 PP00150G00460 ... | 4 | ||
| Tree-based ortholog | PP00058G01210 PP00150G00460 | 2 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Orthologous gene family | many-to-1 | ATR_00036G00380 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ATR_00036G00380 | 1 | ||
| Tree-based ortholog | many-to-1 | ATR_00036G00380 | 1 | ||
| Arabidopsis lyrata | Orthologous gene family | many-to-1 | AL7G02030 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | AL7G02030 | 1 | ||
| Tree-based ortholog | many-to-1 | AL7G02030 | 1 | ||
| Arabidopsis thaliana | Orthologous gene family | many-to-1 | AT4G39820 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | AT4G39820 | 1 | ||
| Tree-based ortholog | many-to-1 | AT4G39820 | 1 | ||
| Beta vulgaris | Orthologous gene family | many-to-1 | BV6G13420 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | BV6G13420 | 1 | ||
| Tree-based ortholog | many-to-1 | BV6G13420 | 1 | ||
| Brassica rapa | Orthologous gene family | many-to-1 | BR08G19570 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | BR08G19570 | 1 | ||
| Tree-based ortholog | many-to-many | BR08G19570 BR01G00730 | 2 | ||
| Capsella rubella | Orthologous gene family | many-to-1 | CRU_007G01620 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CRU_007G01620 | 1 | ||
| Tree-based ortholog | many-to-1 | CRU_007G01620 | 1 | ||
| Carica papaya | Orthologous gene family | many-to-1 | CP00020G02290 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CP00020G02290 | 1 | ||
| Tree-based ortholog | many-to-1 | CP00020G02290 | 1 | ||
| Citrullus lanatus | Orthologous gene family | many-to-1 | CL01G19210 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CL01G19210 | 1 | ||
| Tree-based ortholog | many-to-1 | CL01G19210 | 1 | ||
| Citrus sinensis | Orthologous gene family | many-to-1 | CS00321G00030 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CS00321G00030 | 1 | ||
| Tree-based ortholog | many-to-1 | CS00321G00030 | 1 | ||
| Cucumis melo | Orthologous gene family | many-to-1 | CM00007G08060 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CM00007G08060 | 1 | ||
| Tree-based ortholog | many-to-1 | CM00007G08060 | 1 | ||
| Eucalyptus grandis | Orthologous gene family | many-to-1 | EG0009G03230 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | EG0009G03230 | 1 | ||
| Tree-based ortholog | many-to-1 | EG0009G03230 | 1 | ||
| Fragaria vesca | Orthologous gene family | many-to-1 | FV6G00470 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | FV6G00470 | 1 | ||
| Tree-based ortholog | many-to-1 | FV6G00470 | 1 | ||
| Glycine max | Orthologous gene family | many-to-many | GM11G36180 GM18G02260 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-many | GM18G02260 GM11G36180 | 2 | ||
| Tree-based ortholog | many-to-many | GM18G02260 GM11G36180 | 2 | ||
| Gossypium raimondii | Orthologous gene family | many-to-many | GR07G06170 GR08G10370 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | GR07G06170 | 1 | ||
| Tree-based ortholog | many-to-many | GR07G06170 GR08G10370 | 2 | ||
| Malus domestica | Orthologous gene family | many-to-many | MD17G016760 MD17G016810 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-many | MD17G016810 MD17G016760 | 2 | ||
| Tree-based ortholog | many-to-many | MD17G016760 MD17G016810 | 2 | ||
| Manihot esculenta | Orthologous gene family | many-to-1 | ME08265G00480 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ME08265G00480 | 1 | ||
| Tree-based ortholog | many-to-1 | ME08265G00480 | 1 | ||
| Medicago truncatula | Orthologous gene family | many-to-1 | MT3G087760 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | MT3G087760 | 1 | ||
| Tree-based ortholog | many-to-1 | MT3G087760 | 1 | ||
| Oryza sativa ssp. japonica | Orthologous gene family | many-to-1 | OS02G34540 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | OS02G34540 | 1 | ||
| Tree-based ortholog | many-to-1 | OS02G34540 | 1 | ||
| Ostreococcus lucimarinus | Orthologous gene family | many-to-1 | OL07G00590 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | OL07G00590 | 1 | ||
| Tree-based ortholog | many-to-1 | OL07G00590 | 1 | ||
| Populus trichocarpa | Orthologous gene family | many-to-1 | PT05G07930 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | PT05G07930 | 1 | ||
| Tree-based ortholog | many-to-1 | PT05G07930 | 1 | ||
| Prunus persica | Orthologous gene family | many-to-1 | PPE_003G08990 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | PPE_003G08990 | 1 | ||
| Tree-based ortholog | many-to-1 | PPE_003G08990 | 1 | ||
| Ricinus communis | Orthologous gene family | many-to-1 | RC29877G00060 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | RC29877G00060 | 1 | ||
| Tree-based ortholog | many-to-1 | RC29877G00060 | 1 | ||
| Solanum lycopersicum | Orthologous gene family | many-to-1 | SL05G051840 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | SL05G051840 | 1 | ||
| Tree-based ortholog | many-to-1 | SL05G051840 | 1 | ||
| Solanum tuberosum | Orthologous gene family | many-to-1 | ST05G024470 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ST05G024470 | 1 | ||
| Tree-based ortholog | many-to-1 | ST05G024470 | 1 | ||
| Thellungiella parvula | Orthologous gene family | many-to-1 | TP7G36070 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | TP7G36070 | 1 | ||
| Tree-based ortholog | many-to-1 | TP7G36070 | 1 | ||
| Theobroma cacao | Orthologous gene family | many-to-1 | TC0001G10230 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | TC0001G10230 | 1 | ||
| Tree-based ortholog | many-to-1 | TC0001G10230 | 1 | ||
| Vitis vinifera | Orthologous gene family | many-to-1 | VV07G05800 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | VV07G05800 | 1 | ||
| Zea mays | Orthologous gene family | many-to-1 | ZM05G30260 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ZM05G30260 | 1 | ||
| Tree-based ortholog | many-to-1 | ZM05G30260 | 1 |