Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
GR09G27660
(Gossypium raimondii)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Gossypium raimondii | Orthologous gene family | GR09G27660 GR10G02380 | 2 |  |
| Anchor point | GR10G02380 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | GR09G27660 | 1 | ||
| Tree-based ortholog | GR10G02380 GR09G27660 | 2 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Orthologous gene family | many-to-1 | ATR_00167G00290 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR_00167G00290 | 1 | ||
| Tree-based ortholog | many-to-many | ATR_00167G00290 ATR_00090G00170 | 2 | ||
| Arabidopsis lyrata | Orthologous gene family | many-to-1 | AL7G17940 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AL7G17940 | 1 | ||
| Tree-based ortholog | many-to-1 | AL7G17940 | 1 | ||
| Arabidopsis thaliana | Orthologous gene family | many-to-1 | AT4G24210 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AT4G24210 | 1 | ||
| Tree-based ortholog | many-to-1 | AT4G24210 | 1 | ||
| Beta vulgaris | Orthologous gene family | many-to-1 | BV0G76780 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV0G76780 | 1 | ||
| Tree-based ortholog | many-to-1 | BV0G76780 | 1 | ||
| Brassica rapa | Orthologous gene family | many-to-1 | BR01G14200 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BR01G14200 | 1 | ||
| Tree-based ortholog | many-to-1 | BR01G14200 | 1 | ||
| Capsella rubella | Orthologous gene family | many-to-1 | CRU_007G15970 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CRU_007G15970 | 1 | ||
| Tree-based ortholog | many-to-1 | CRU_007G15970 | 1 | ||
| Carica papaya | Orthologous gene family | many-to-1 | CP00021G01380 | 1 | |
| Anchor point | 1-to-1 | CP00021G01380 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00021G01380 | 1 | ||
| Tree-based ortholog | many-to-1 | CP00021G01380 | 1 | ||
| Citrullus lanatus | Orthologous gene family | many-to-1 | CL05G21440 | 1 | |
| Anchor point | 1-to-many | CL05G21440 CL08G15860 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL05G21440 | 1 | ||
| Tree-based ortholog | many-to-many | CL08G15860 CL05G21440 | 2 | ||
| Citrus sinensis | Orthologous gene family | many-to-1 | CS02600G00010 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS02600G00010 | 1 | ||
| Tree-based ortholog | many-to-1 | CS00858G00010 | 1 | ||
| Cucumis melo | Orthologous gene family | many-to-1 | CM00029G01660 | 1 | |
| Anchor point | 1-to-many | CM00014G01840 CM00029G01660 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00029G01660 | 1 | ||
| Tree-based ortholog | many-to-many | CM00014G01840 CM00029G01660 | 2 | ||
| Eucalyptus grandis | Orthologous gene family | many-to-1 | EG0006G01380 | 1 | |
| Anchor point | 1-to-1 | EG0006G01380 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0006G01380 | 1 | ||
| Tree-based ortholog | many-to-1 | EG0006G01380 | 1 | ||
| Fragaria vesca | Orthologous gene family | many-to-1 | FV2G33220 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV2G33220 | 1 | ||
| Tree-based ortholog | many-to-1 | FV2G33220 | 1 | ||
| Glycine max | Orthologous gene family | many-to-many | GM04G04540 GM06G04640 GM14G09560 ... | 4 | |
| Anchor point | 1-to-many | GM04G04540 GM06G04640 GM17G35610 ... | 4 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GM04G04540 GM14G09560 GM17G35610 | 3 | ||
| Tree-based ortholog | many-to-many | GM17G35610 GM14G09560 GM04G04540 ... | 4 | ||
| Lotus japonicus | Orthologous gene family | many-to-1 | LJ5G003610 | 1 | |
| Anchor point | 1-to-1 | LJ5G003610 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ5G003610 | 1 | ||
| Tree-based ortholog | many-to-1 | LJ5G003610 | 1 | ||
| Malus domestica | Orthologous gene family | many-to-many | MD00G099780 MD08G010450 MD15G002340 ... | 4 | |
| Anchor point | 1-to-many | MD08G010450 MD15G002340 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | MD00G099780 MD15G002340 MD08G010450 ... | 4 | ||
| Tree-based ortholog | many-to-many | MD15G002340 MD00G099780 MD15G002370 ... | 7 | ||
| Manihot esculenta | Orthologous gene family | many-to-1 | ME09870G00030 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ME09870G00030 | 1 | ||
| Tree-based ortholog | many-to-1 | ME09870G00030 | 1 | ||
| Medicago truncatula | Orthologous gene family | many-to-1 | MT3G102470 | 1 | |
| Anchor point | 1-to-1 | MT3G102470 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT3G102470 | 1 | ||
| Tree-based ortholog | many-to-1 | MT3G102470 | 1 | ||
| Oryza sativa ssp. japonica | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS03G10040 | 1 | |
| Physcomitrella patens | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PP00156G00970 | 1 | |
| Populus trichocarpa | Orthologous gene family | many-to-many | PT02G12230 PT14G02210 | 2 | |
| Anchor point | 1-to-1 | PT02G12230 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PT14G02210 PT02G12230 | 2 | ||
| Tree-based ortholog | many-to-many | PT14G02210 PT02G12230 | 2 | ||
| Prunus persica | Orthologous gene family | many-to-1 | PPE_001G43410 | 1 | |
| Anchor point | 1-to-1 | PPE_001G43410 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_001G43410 | 1 | ||
| Tree-based ortholog | many-to-1 | PPE_001G43410 | 1 | ||
| Ricinus communis | Orthologous gene family | many-to-1 | RC30170G01530 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC30170G01530 | 1 | ||
| Tree-based ortholog | many-to-1 | RC30170G01530 | 1 | ||
| Solanum lycopersicum | Orthologous gene family | many-to-1 | SL04G078390 | 1 | |
| Anchor point | 1-to-1 | SL04G078390 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL04G078390 | 1 | ||
| Tree-based ortholog | many-to-1 | SL04G078390 | 1 | ||
| Solanum tuberosum | Orthologous gene family | many-to-1 | ST04G031350 | 1 | |
| Anchor point | 1-to-1 | ST04G031350 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST04G031350 | 1 | ||
| Tree-based ortholog | many-to-1 | ST04G031350 | 1 | ||
| Thellungiella parvula | Orthologous gene family | many-to-1 | TP7G22190 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP7G22190 | 1 | ||
| Tree-based ortholog | many-to-1 | TP7G22190 | 1 | ||
| Theobroma cacao | Orthologous gene family | many-to-1 | TC0008G09220 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TC0008G09220 | 1 | ||
| Tree-based ortholog | many-to-1 | TC0008G09220 | 1 | ||
| Vitis vinifera | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV12G09510 | 1 | |
| Zea mays | Orthologous gene family | many-to-many | ZM04G17380 ZM05G31940 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | ZM05G31940 ZM04G17380 | 2 | ||
| Tree-based ortholog | many-to-many | ZM05G31940 ZM04G17380 | 2 |