Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
CRU_001G05780
(Capsella rubella)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Capsella rubella | Orthologous gene family | CRU_001G05780 CRU_005G18950 CRU_007G31180 | 3 |  |
| Best-Hits-and-Inparalogs(BHI)family | CRU_001G05780 | 1 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Orthologous gene family | many-to-many | ATR_00077G01540 ATR_00077G01550 ATR_00077G01560 | 3 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | ATR_00077G01540 ATR_00077G01560 | 2 | ||
| Arabidopsis lyrata | Orthologous gene family | many-to-many | AL1G06380 AL5G23590 AL6G00080 ... | 4 | |
| Anchor point | N/A | AL1G06380 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AL1G06380 | 1 | ||
| Arabidopsis thaliana | Orthologous gene family | many-to-many | AT1G06840 AT3G53590 AT5G01950 ... | 4 | |
| Anchor point | N/A | AT1G06840 AT3G59420 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AT1G06840 | 1 | ||
| Beta vulgaris | Orthologous gene family | many-to-many | BV0G56760 BV7G09370 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV0G56760 | 1 | ||
| Brassica rapa | Orthologous gene family | many-to-many | BR03G00040 BR03G00050 BR09G34830 ... | 4 | |
| Anchor point | N/A | BR10G01180 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BR10G01180 | 1 | ||
| Carica papaya | Orthologous gene family | many-to-1 | CP00002G02530 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00002G02530 | 1 | ||
| Citrullus lanatus | Orthologous gene family | many-to-many | CL03G00030 CL04G06210 | 2 | |
| Anchor point | N/A | CL03G00030 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL04G06210 | 1 | ||
| Citrus sinensis | Orthologous gene family | many-to-many | CS00036G00470 CS00118G00060 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS00118G00060 | 1 | ||
| Cucumis melo | Orthologous gene family | many-to-1 | CM00044G00050 | 1 | |
| Anchor point | N/A | CM00044G00050 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00011G00020 | 1 | ||
| Eucalyptus grandis | Orthologous gene family | many-to-many | EG0001G06290 EG0001G06300 EG0001G06320 ... | 4 | |
| Anchor point | N/A | EG0010G15960 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0010G15960 | 1 | ||
| Fragaria vesca | Orthologous gene family | many-to-many | FV3G30860 FV6G08150 | 2 | |
| Anchor point | N/A | FV3G23480 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV3G30860 | 1 | ||
| Glycine max | Orthologous gene family | many-to-many | GM02G40380 GM09G40880 GM11G31515 ... | 8 | |
| Anchor point | N/A | GM02G40366 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GM18G05710 GM11G31515 | 2 | ||
| Gossypium raimondii | Orthologous gene family | many-to-many | GR05G00270 GR05G12120 GR11G12550 ... | 4 | |
| Anchor point | N/A | GR09G11590 GR06G23570 GR05G00270 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GR13G27160 | 1 | ||
| Lotus japonicus | Orthologous gene family | many-to-1 | LJ1G032510 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ1G032510 | 1 | ||
| Malus domestica | Orthologous gene family | many-to-many | MD00G025990 MD00G194110 MD00G273120 ... | 9 | |
| Anchor point | N/A | MD03G004760 MD03G003690 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MD00G291040 | 1 | ||
| Manihot esculenta | Orthologous gene family | many-to-many | ME09360G00100 ME09360G00120 ME10695G00040 ... | 5 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ME09360G00120 | 1 | ||
| Medicago truncatula | Orthologous gene family | many-to-many | MT3G062570 MT3G062590 MT5G075650 ... | 5 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT3G062590 | 1 | ||
| Oryza sativa ssp. japonica | Orthologous gene family | many-to-many | OS01G60280 OS01G72990 OS05G40270 | 3 | |
| Anchor point | N/A | OS05G25350 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS01G72990 | 1 | ||
| Physcomitrella patens | Orthologous gene family | many-to-many | PP00128G00460 PP00163G00040 PP00319G00080 ... | 4 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PP00163G00040 | 1 | ||
| Populus trichocarpa | Orthologous gene family | many-to-many | PT00G07790 PT06G11110 PT13G15920 ... | 8 | |
| Anchor point | N/A | PT19G13180 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PT13G15950 PT13G15920 PT19G13180 | 3 | ||
| Prunus persica | Orthologous gene family | many-to-many | PPE_006G30330 PPE_006G30340 PPE_006G30360 | 3 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_006G03450 | 1 | ||
| Ricinus communis | Orthologous gene family | many-to-many | RC27955G00040 RC29945G00050 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC27955G00040 | 1 | ||
| Solanum lycopersicum | Orthologous gene family | many-to-many | SL09G055180 SL09G055570 SL10G074890 ... | 4 | |
| Anchor point | N/A | SL02G021660 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL09G055570 | 1 | ||
| Solanum tuberosum | Orthologous gene family | many-to-many | ST09G017470 ST10G017840 ST10G017930 ... | 5 | |
| Anchor point | N/A | ST09G015390 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST09G017470 | 1 | ||
| Thellungiella parvula | Orthologous gene family | many-to-many | TP1G05570 TP6G41190 | 2 | |
| Anchor point | N/A | TP1G05570 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP1G05570 | 1 | ||
| Theobroma cacao | Orthologous gene family | many-to-many | TC0004G15330 TC0004G15340 TC0009G35800 | 3 | |
| Anchor point | N/A | TC0009G35800 TC0004G15330 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TC0009G35800 | 1 | ||
| Vitis vinifera | Anchor point | N/A | VV06G00240 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV06G00240 | 1 | ||
| Zea mays | Orthologous gene family | many-to-many | ZM01G07900 ZM02G21920 ZM03G28480 ... | 5 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | ZM03G28480 ZM06G26770 ZM01G07900 ... | 4 |