Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
CRU_001G00420
(Capsella rubella)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Capsella rubella | Orthologous gene family | CRU_001G00420 CRU_001G38010 CRU_002G01360 ... | 11 |  |
| Tree-based ortholog | CRU_001G00420 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | CRU_001G00420 | 1 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Orthologous gene family | many-to-many | ATR_00001G02450 ATR_00009G02620 ATR_00029G02430 ... | 4 | |
| Tree-based ortholog | 1-to-many | ATR_00009G02620 ATR_00029G02430 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR_00029G02430 | 1 | ||
| Arabidopsis lyrata | Orthologous gene family | many-to-many | AL0G10940 AL1G45570 AL2G01630 ... | 12 | |
| Tree-based ortholog | 1-to-1 | AL6G40930 | 1 | ||
| Anchor point | N/A | AL6G40930 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AL6G40930 | 1 | ||
| Arabidopsis thaliana | Orthologous gene family | many-to-many | AT1G01740 AT1G50990 AT1G63500 ... | 12 | |
| Tree-based ortholog | 1-to-1 | AT1G01740 | 1 | ||
| Anchor point | N/A | AT4G00710 AT1G01740 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AT1G01740 | 1 | ||
| Beta vulgaris | Orthologous gene family | many-to-many | BV0G08470 BV0G36830 BV1G06850 ... | 6 | |
| Tree-based ortholog | 1-to-many | BV7G05730 BV0G08470 BV1G06850 | 3 | ||
| Anchor point | N/A | BV1G06850 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV0G08470 | 1 | ||
| Brassica rapa | Orthologous gene family | many-to-many | BR01G03060 BR01G09200 BR01G39060 ... | 19 | |
| Tree-based ortholog | 1-to-1 | BR10G06400 | 1 | ||
| Anchor point | N/A | BR03G28090 BR10G06400 BR09G08830 ... | 4 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BR03G28090 | 1 | ||
| Carica papaya | Orthologous gene family | many-to-many | CP00006G04050 CP00018G02360 CP00026G02150 ... | 7 | |
| Tree-based ortholog | 1-to-1 | CP00018G02360 | 1 | ||
| Anchor point | N/A | CP00018G02360 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00018G02360 | 1 | ||
| Citrullus lanatus | Orthologous gene family | many-to-many | CL01G02550 CL02G11410 CL02G20090 ... | 8 | |
| Tree-based ortholog | 1-to-many | CL07G09420 CL01G02550 CL02G20090 ... | 4 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL01G02550 | 1 | ||
| Citrus sinensis | Orthologous gene family | many-to-many | CS00001G00110 CS00001G02940 CS00002G06420 ... | 7 | |
| Tree-based ortholog | 1-to-1 | CS00001G02940 | 1 | ||
| Anchor point | N/A | CS00001G02940 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS00001G02940 | 1 | ||
| Cucumis melo | Orthologous gene family | many-to-many | CM00002G01540 CM00005G06450 CM00006G03330 ... | 8 | |
| Tree-based ortholog | 1-to-many | CM00027G02960 CM00005G06450 CM00084G00410 ... | 4 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00005G06450 | 1 | ||
| Eucalyptus grandis | Orthologous gene family | many-to-many | EG0002G22420 EG0004G14890 EG0005G01450 ... | 7 | |
| Tree-based ortholog | 1-to-1 | EG0005G01450 | 1 | ||
| Anchor point | N/A | EG0005G01450 EG0005G05250 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0005G01450 | 1 | ||
| Fragaria vesca | Orthologous gene family | many-to-many | FV2G11660 FV2G37490 FV3G21210 ... | 7 | |
| Tree-based ortholog | 1-to-1 | FV7G08350 | 1 | ||
| Anchor point | N/A | FV7G08350 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV5G02720 | 1 | ||
| Glycine max | Orthologous gene family | many-to-many | GM01G26690 GM02G48030 GM03G01300 ... | 13 | |
| Tree-based ortholog | 1-to-many | GM07G07850 GM03G01300 | 2 | ||
| Anchor point | N/A | GM07G07850 GM05G37870 GM08G01730 ... | 4 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GM07G07850 GM03G01300 | 2 | ||
| Gossypium raimondii | Orthologous gene family | many-to-many | GR01G11440 GR02G20510 GR02G25920 ... | 13 | |
| Tree-based ortholog | 1-to-1 | GR08G12200 | 1 | ||
| Anchor point | N/A | GR08G12200 GR08G24680 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GR08G12200 | 1 | ||
| Lotus japonicus | Orthologous gene family | many-to-1 | LJ4G045710 | 1 | |
| Tree-based ortholog | 1-to-1 | LJ4G045710 | 1 | ||
| Anchor point | N/A | LJ4G045710 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ4G045710 | 1 | ||
| Malus domestica | Orthologous gene family | many-to-many | MD00G014650 MD00G017210 MD00G029100 ... | 15 | |
| Tree-based ortholog | 1-to-many | MD00G270860 MD00G438840 MD00G078840 ... | 5 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MD00G070360 | 1 | ||
| Manihot esculenta | Orthologous gene family | many-to-many | ME02658G01390 ME02943G00860 ME03150G00690 ... | 10 | |
| Tree-based ortholog | 1-to-1 | ME02658G01390 | 1 | ||
| Anchor point | N/A | ME02658G01390 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ME02658G01390 | 1 | ||
| Medicago truncatula | Orthologous gene family | many-to-many | MT4G020070 MT4G065003 MT4G098740 ... | 7 | |
| Tree-based ortholog | 1-to-many | MT7G077150 MT8G031030 | 2 | ||
| Anchor point | N/A | MT8G031030 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT8G031030 | 1 | ||
| Oryza sativa ssp. japonica | Orthologous gene family | many-to-many | OS03G04050 OS03G61010 OS04G58750 ... | 5 | |
| Tree-based ortholog | 1-to-many | OS03G61010 OS04G58750 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS10G42110 | 1 | ||
| Physcomitrella patens | Orthologous gene family | many-to-many | PP00009G01660 PP00012G01100 PP00027G01570 ... | 8 | |
| Tree-based ortholog | 1-to-many | PP00009G01660 PP00156G00740 PP00122G00310 ... | 8 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PP00122G00310 PP00156G00740 PP00012G01100 ... | 5 | ||
| Populus trichocarpa | Orthologous gene family | many-to-many | PT01G10470 PT01G24640 PT02G01180 ... | 14 | |
| Tree-based ortholog | 1-to-many | PT02G15840 PT14G08240 | 2 | ||
| Anchor point | N/A | PT02G15840 PT01G10470 PT14G08240 ... | 4 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PT14G08240 PT02G15840 | 2 | ||
| Prunus persica | Orthologous gene family | many-to-many | PPE_001G36400 PPE_002G11330 PPE_002G16300 ... | 10 | |
| Tree-based ortholog | 1-to-1 | PPE_002G16300 | 1 | ||
| Anchor point | N/A | PPE_002G16300 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_002G16300 | 1 | ||
| Ricinus communis | Orthologous gene family | many-to-many | RC27798G00340 RC29709G00600 RC29751G00320 ... | 7 | |
| Tree-based ortholog | 1-to-1 | RC30174G02680 | 1 | ||
| Anchor point | N/A | RC30174G02680 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC30174G02680 | 1 | ||
| Solanum lycopersicum | Orthologous gene family | many-to-many | SL01G080880 SL04G082260 SL06G076600 ... | 7 | |
| Tree-based ortholog | 1-to-many | SL11G064890 SL12G099830 SL06G076600 ... | 5 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL11G064890 | 1 | ||
| Solanum tuberosum | Orthologous gene family | many-to-many | ST01G028310 ST04G035700 ST06G032390 ... | 7 | |
| Tree-based ortholog | 1-to-many | ST11G020710 ST12G031800 ST06G032390 ... | 5 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST11G020710 | 1 | ||
| Thellungiella parvula | Orthologous gene family | many-to-many | TP1G00560 TP2G01110 TP2G11400 ... | 12 | |
| Tree-based ortholog | 1-to-1 | TP1G00560 | 1 | ||
| Anchor point | N/A | TP1G00560 TP6G00690 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP1G00560 | 1 | ||
| Theobroma cacao | Orthologous gene family | many-to-many | TC0001G35770 TC0002G04540 TC0003G27410 ... | 7 | |
| Tree-based ortholog | 1-to-1 | TC0001G35770 | 1 | ||
| Anchor point | N/A | TC0001G35770 TC0003G27410 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TC0001G35770 | 1 | ||
| Vitis vinifera | Orthologous gene family | many-to-many | VV02G02420 VV02G06510 VV03G03910 ... | 7 | |
| Tree-based ortholog | 1-to-many | VV02G06510 VV08G13600 VV06G02540 | 3 | ||
| Anchor point | N/A | VV02G06510 VV15G04660 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV15G04660 | 1 | ||
| Zea mays | Orthologous gene family | many-to-many | ZM01G02480 ZM01G22020 ZM01G58250 ... | 7 | |
| Tree-based ortholog | 1-to-many | ZM05G01260 ZM01G58250 ZM02G00110 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ZM02G00110 | 1 |