Integrative Orthology Viewer: BR01G10190 (Brassica rapa)
Inparalogs
Organism | Source | Genes | #genes | Details |
---|---|---|---|---|
Brassica rapa | Orthologous gene family | BR01G10190 BR03G21440 BR03G44960 ... | 6 | |
Tree-based ortholog | BR08G11710 BR01G10190 | 2 | ||
Anchor point | BR03G44960 BR09G27060 BR08G11710 | 3 | ||
Best-Hits-and-Inparalogs(BHI)family | BR01G10190 BR08G11710 | 2 |
Orthologs
Organism | Source | Type | Genes | #genes | Details |
---|---|---|---|---|---|
Amborella trichopoda | Orthologous gene family | many-to-1 | ATR_00048G01750 | 1 | |
Tree-based ortholog | many-to-1 | ATR_00048G01750 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ATR_00048G01750 | 1 | ||
Arabidopsis lyrata | Orthologous gene family | many-to-many | AL1G33060 AL7G23420 | 2 | |
Tree-based ortholog | many-to-1 | AL7G23420 | 1 | ||
Anchor point | many-to-1 | AL7G23420 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | many-to-1 | AL7G23420 | 1 | ||
Arabidopsis thaliana | Orthologous gene family | many-to-many | AT1G31850 AT4G19120 | 2 | |
Tree-based ortholog | many-to-1 | AT4G19120 | 1 | ||
Anchor point | many-to-1 | AT4G19120 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | many-to-1 | AT4G19120 | 1 | ||
Beta vulgaris | Orthologous gene family | many-to-many | BV0G16430 BV5G18590 | 2 | |
Tree-based ortholog | many-to-1 | BV5G18590 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | many-to-1 | BV5G18590 | 1 | ||
Capsella rubella | Orthologous gene family | many-to-many | CRU_001G28790 CRU_004G24740 CRU_007G21070 | 3 | |
Tree-based ortholog | many-to-1 | CRU_007G21070 | 1 | ||
Anchor point | many-to-many | CRU_007G21070 CRU_001G28790 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CRU_007G21070 | 1 | ||
Carica papaya | Orthologous gene family | many-to-many | CP00107G00170 CP00128G00180 | 2 | |
Tree-based ortholog | many-to-1 | CP35741G00010 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CP35741G00010 | 1 | ||
Citrullus lanatus | Orthologous gene family | many-to-1 | CL07G00780 | 1 | |
Tree-based ortholog | many-to-1 | CL07G00780 | 1 | ||
Anchor point | many-to-1 | CL07G00780 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CL07G00780 | 1 | ||
Citrus sinensis | Orthologous gene family | many-to-many | CS00009G00630 CS00484G00020 | 2 | |
Tree-based ortholog | many-to-1 | CS00210G00080 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CS00210G00080 | 1 | ||
Cucumis melo | Orthologous gene family | many-to-1 | CM00054G01150 | 1 | |
Tree-based ortholog | many-to-1 | CM00054G01150 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CM00054G01150 | 1 | ||
Eucalyptus grandis | Orthologous gene family | many-to-many | EG0004G21610 EG0005G10360 | 2 | |
Tree-based ortholog | many-to-many | EG0010G06260 EG0005G18540 EG0005G10360 | 3 | ||
Anchor point | many-to-1 | EG0005G09500 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | many-to-1 | EG0004G21610 | 1 | ||
Fragaria vesca | Orthologous gene family | many-to-1 | FV0G28600 | 1 | |
Tree-based ortholog | many-to-1 | FV0G28600 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | many-to-1 | FV0G28600 | 1 | ||
Glycine max | Orthologous gene family | many-to-many | GM01G35220 GM09G34640 GM16G08105 ... | 6 | |
Tree-based ortholog | many-to-many | GM01G35220 GM09G34640 GM16G17500 ... | 5 | ||
Best-Hits-and-Inparalogs(BHI)family | many-to-many | GM01G35220 GM09G34640 | 2 | ||
Gossypium raimondii | Orthologous gene family | many-to-many | GR04G17870 GR08G22050 | 2 | |
Tree-based ortholog | many-to-1 | GR08G22050 | 1 | ||
Anchor point | many-to-many | GR04G17870 GR08G22050 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | many-to-1 | GR08G22050 | 1 | ||
Lotus japonicus | Tree-based ortholog | many-to-many | LJ1G033620 LJ5G001450 LJ2G030140 ... | 8 | |
Best-Hits-and-Inparalogs(BHI)family | many-to-1 | LJ5G033740 | 1 | ||
Malus domestica | Orthologous gene family | many-to-many | MD00G048030 MD00G049590 MD00G191020 ... | 10 | |
Tree-based ortholog | many-to-many | MD06G001590 MD00G199150 MD00G048030 | 3 | ||
Best-Hits-and-Inparalogs(BHI)family | many-to-many | MD00G048030 MD00G199150 MD06G001590 | 3 | ||
Manihot esculenta | Orthologous gene family | many-to-1 | ME00560G00060 | 1 | |
Tree-based ortholog | many-to-many | ME00016G00030 ME00560G00060 ME00016G00020 | 3 | ||
Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ME00560G00060 | 1 | ||
Medicago truncatula | Orthologous gene family | many-to-many | MT5G026930 MT8G071280 | 2 | |
Tree-based ortholog | many-to-many | MT5G026930 MT8G071280 | 2 | ||
Anchor point | many-to-1 | MT4G083030 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | many-to-1 | MT5G026930 | 1 | ||
Oryza sativa ssp. japonica | Orthologous gene family | many-to-1 | OS01G67360 | 1 | |
Tree-based ortholog | many-to-many | OS04G48140 OS03G56380 OS01G66110 ... | 14 | ||
Best-Hits-and-Inparalogs(BHI)family | many-to-1 | OS06G01450 | 1 | ||
Physcomitrella patens | Orthologous gene family | many-to-many | PP00043G00720 PP00130G00270 | 2 | |
Tree-based ortholog | many-to-many | PP00043G00720 PP00130G00270 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | many-to-many | PP00043G00720 PP00130G00270 | 2 | ||
Populus trichocarpa | Orthologous gene family | many-to-many | PT01G13140 PT03G10240 PT03G10260 | 3 | |
Tree-based ortholog | many-to-many | PT03G10260 PT03G10240 PT01G13140 | 3 | ||
Anchor point | many-to-1 | PT03G10240 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | many-to-many | PT03G10260 PT01G13140 PT03G10240 | 3 | ||
Prunus persica | Orthologous gene family | many-to-many | PPE_005G02240 PPE_005G04890 | 2 | |
Tree-based ortholog | many-to-1 | PPE_005G02240 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | many-to-1 | PPE_005G02240 | 1 | ||
Ricinus communis | Orthologous gene family | many-to-1 | RC29827G00530 | 1 | |
Tree-based ortholog | many-to-1 | RC29827G00530 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | many-to-1 | RC29827G00530 | 1 | ||
Solanum lycopersicum | Orthologous gene family | many-to-many | SL08G005490 SL08G075870 | 2 | |
Tree-based ortholog | many-to-many | SL08G075870 SL08G005490 | 2 | ||
Anchor point | many-to-1 | SL08G005490 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | many-to-1 | SL08G075870 | 1 | ||
Solanum tuberosum | Orthologous gene family | many-to-many | ST08G008480 ST08G020910 | 2 | |
Tree-based ortholog | many-to-many | ST08G020910 ST08G008480 | 2 | ||
Anchor point | many-to-1 | ST08G008480 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ST08G008480 | 1 | ||
Thellungiella parvula | Orthologous gene family | many-to-many | TP1G27560 TP4G25320 TP7G17820 | 3 | |
Tree-based ortholog | many-to-1 | TP7G17820 | 1 | ||
Anchor point | many-to-1 | TP7G17820 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | many-to-1 | TP7G17820 | 1 | ||
Theobroma cacao | Orthologous gene family | many-to-1 | TC0003G31170 | 1 | |
Tree-based ortholog | many-to-1 | TC0003G31170 | 1 | ||
Anchor point | many-to-1 | TC0003G31170 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | many-to-1 | TC0003G31170 | 1 | ||
Vitis vinifera | Orthologous gene family | many-to-1 | VV02G08820 | 1 | |
Tree-based ortholog | many-to-1 | VV02G08820 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | many-to-1 | VV02G08820 | 1 | ||
Zea mays | Orthologous gene family | many-to-many | ZM01G16810 ZM01G23100 ZM09G18790 | 3 | |
Tree-based ortholog | many-to-1 | ZM01G23100 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ZM01G23100 | 1 |