Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
ATR_00001G00200
(Amborella trichopoda)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Amborella trichopoda | Orthologous gene family | ATR_00001G00200 ATR_00044G01130 | 2 |  |
| Tree-based ortholog | ATR_00044G01150 ATR_00001G00200 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | ATR_00044G01130 ATR_00001G00200 | 2 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Arabidopsis lyrata | Tree-based ortholog | many-to-many | AL7G20340 AL6G36320 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | AL6G36320 | 1 | ||
| Arabidopsis thaliana | Tree-based ortholog | many-to-many | AT4G22030 AT4G04480 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | AT4G04480 | 1 | ||
| Beta vulgaris | Tree-based ortholog | many-to-1 | BV8G12940 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | BV8G12940 | 1 | ||
| Brassica rapa | Tree-based ortholog | many-to-1 | BR03G26420 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | BR03G26420 | 1 | ||
| Capsella rubella | Tree-based ortholog | many-to-many | CRU_007G18400 CRU_006G31060 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CRU_006G31060 | 1 | ||
| Carica papaya | Tree-based ortholog | many-to-1 | CP00152G00310 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CP00152G00310 | 1 | ||
| Citrullus lanatus | Tree-based ortholog | many-to-1 | CL03G04430 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CL03G04430 | 1 | ||
| Citrus sinensis | Tree-based ortholog | many-to-1 | CS00007G03020 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CS00007G03020 | 1 | ||
| Cucumis melo | Tree-based ortholog | many-to-1 | CM00001G05460 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CM00001G05460 | 1 | ||
| Eucalyptus grandis | Tree-based ortholog | many-to-1 | EG0004G10850 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-many | EG0005G30500 EG0005G30490 EG0005G30530 ... | 19 | ||
| Fragaria vesca | Orthologous gene family | many-to-1 | FV3G25590 | 1 | |
| Tree-based ortholog | many-to-1 | FV3G25590 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | FV3G25590 | 1 | ||
| Glycine max | Tree-based ortholog | many-to-many | GM15G11640 GM09G00780 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-many | GM15G11640 GM09G00780 | 2 | ||
| Gossypium raimondii | Orthologous gene family | many-to-1 | GR10G25200 | 1 | |
| Tree-based ortholog | many-to-1 | GR10G18190 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-many | GR10G25180 GR10G25160 GR10G25170 ... | 5 | ||
| Malus domestica | Orthologous gene family | many-to-1 | MD11G017890 | 1 | |
| Tree-based ortholog | many-to-1 | MD11G017890 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-many | MD00G293480 MD10G026690 MD00G293540 | 3 | ||
| Manihot esculenta | Tree-based ortholog | many-to-many | ME06598G00330 ME11251G00080 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ME06598G00330 | 1 | ||
| Medicago truncatula | Tree-based ortholog | many-to-1 | MT2G023860 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-many | MT2G023660 MT2G023820 MT2G023710 ... | 5 | ||
| Oryza sativa ssp. japonica | Tree-based ortholog | many-to-many | OS12G01970 OS02G28590 OS02G13190 ... | 5 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-many | OS02G13190 OS02G13260 OS02G13220 | 3 | ||
| Physcomitrella patens | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | PP00352G00240 | 1 | |
| Populus trichocarpa | Tree-based ortholog | many-to-many | PT04G00940 PT04G00910 PT04G00800 | 3 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-many | PT04G00800 PT04G00940 PT04G00910 | 3 | ||
| Prunus persica | Orthologous gene family | many-to-1 | PPE_004G20790 | 1 | |
| Tree-based ortholog | many-to-1 | PPE_004G20790 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | PPE_004G01670 | 1 | ||
| Ricinus communis | Tree-based ortholog | many-to-1 | RC29634G01030 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | RC29842G00590 | 1 | ||
| Solanum lycopersicum | Tree-based ortholog | many-to-many | SL02G080840 SL02G080830 SL02G080850 | 3 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | SL02G080830 | 1 | ||
| Solanum tuberosum | Tree-based ortholog | many-to-many | ST02G023970 ST02G023960 ST02G023980 | 3 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ST02G023960 | 1 | ||
| Thellungiella parvula | Tree-based ortholog | many-to-1 | TP6G04420 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | TP6G04420 | 1 | ||
| Theobroma cacao | Orthologous gene family | many-to-1 | TC0007G03130 | 1 | |
| Tree-based ortholog | many-to-1 | TC0007G03130 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | TC0006G21680 | 1 | ||
| Vitis vinifera | Orthologous gene family | many-to-1 | VV19G10750 | 1 | |
| Tree-based ortholog | many-to-1 | VV19G10750 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | VV19G10750 | 1 | ||
| Zea mays | Tree-based ortholog | many-to-many | ZM04G37280 ZM05G27060 ZM05G27080 | 3 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ZM05G27080 | 1 |