Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
AT4G17870
(Arabidopsis thaliana)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Arabidopsis thaliana | Orthologous gene family | AT4G17870 AT5G46790 | 2 |  |
| Tree-based ortholog | AT4G17870 | 1 | ||
| Anchor point | AT5G46790 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | AT4G17870 | 1 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Orthologous gene family | many-to-1 | ATR_00111G01300 | 1 | |
| Tree-based ortholog | 1-to-1 | ATR_00111G01300 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR_00111G01300 | 1 | ||
| Arabidopsis lyrata | Orthologous gene family | many-to-many | AL7G25030 AL8G01380 | 2 | |
| Tree-based ortholog | 1-to-1 | AL7G25030 | 1 | ||
| Anchor point | 1-to-many | AL8G01380 AL7G25030 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AL7G25030 | 1 | ||
| Beta vulgaris | Orthologous gene family | many-to-1 | BV5G04610 | 1 | |
| Tree-based ortholog | 1-to-1 | BV5G04610 | 1 | ||
| Anchor point | 1-to-1 | BV5G04610 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV5G04610 | 1 | ||
| Brassica rapa | Orthologous gene family | many-to-many | BR03G44180 BR06G36710 | 2 | |
| Tree-based ortholog | 1-to-1 | BR08G11140 | 1 | ||
| Anchor point | 1-to-many | BR03G44180 BR08G11140 BR01G09080 ... | 5 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BR03G44180 | 1 | ||
| Capsella rubella | Orthologous gene family | many-to-many | CRU_007G22420 CRU_008G01130 | 2 | |
| Tree-based ortholog | 1-to-1 | CRU_007G22420 | 1 | ||
| Anchor point | 1-to-many | CRU_008G01130 CRU_007G22420 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CRU_007G22420 | 1 | ||
| Carica papaya | Orthologous gene family | many-to-1 | CP36665G00010 | 1 | |
| Tree-based ortholog | 1-to-1 | CP36665G00010 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP36665G00010 | 1 | ||
| Citrullus lanatus | Orthologous gene family | many-to-many | CL09G11580 CL10G00490 | 2 | |
| Tree-based ortholog | 1-to-1 | CL09G11580 | 1 | ||
| Anchor point | 1-to-many | CL10G00490 CL09G11580 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL10G00490 | 1 | ||
| Citrus sinensis | Orthologous gene family | many-to-1 | CS00339G00020 | 1 | |
| Tree-based ortholog | 1-to-1 | CS00339G00020 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS00339G00020 | 1 | ||
| Cucumis melo | Orthologous gene family | many-to-many | CM00021G01610 CM01596G01210 | 2 | |
| Tree-based ortholog | 1-to-1 | CM01596G01210 | 1 | ||
| Anchor point | 1-to-many | CM01596G01210 CM00021G01610 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM01596G01210 | 1 | ||
| Eucalyptus grandis | Orthologous gene family | many-to-many | EG0004G18080 EG0005G02540 | 2 | |
| Tree-based ortholog | 1-to-many | EG0004G18080 EG0005G02540 | 2 | ||
| Anchor point | 1-to-many | EG0004G18080 EG0005G02540 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0004G18080 | 1 | ||
| Fragaria vesca | Orthologous gene family | many-to-1 | FV5G29670 | 1 | |
| Tree-based ortholog | 1-to-1 | FV5G29670 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV5G29670 | 1 | ||
| Glycine max | Orthologous gene family | many-to-many | GM01G02290 GM09G33700 | 2 | |
| Tree-based ortholog | 1-to-many | GM01G12970 GM08G36770 GM09G33700 ... | 4 | ||
| Anchor point | 1-to-many | GM01G12970 GM01G02290 GM09G33700 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GM01G02290 GM09G33700 | 2 | ||
| Gossypium raimondii | Orthologous gene family | many-to-many | GR03G18160 GR07G03180 GR08G22650 | 3 | |
| Tree-based ortholog | 1-to-many | GR03G18160 GR08G22650 GR07G03180 | 3 | ||
| Anchor point | 1-to-many | GR07G03180 GR08G22650 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GR03G18160 | 1 | ||
| Lotus japonicus | Orthologous gene family | many-to-1 | LJ2G026340 | 1 | |
| Tree-based ortholog | 1-to-1 | LJ2G026340 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ2G026340 | 1 | ||
| Malus domestica | Orthologous gene family | many-to-many | MD06G003360 MD17G007740 | 2 | |
| Tree-based ortholog | 1-to-many | MD17G007740 MD06G003360 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | MD06G003360 MD17G007740 | 2 | ||
| Manihot esculenta | Orthologous gene family | many-to-1 | ME12544G00010 | 1 | |
| Tree-based ortholog | 1-to-1 | ME12544G00010 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ME12544G00010 | 1 | ||
| Medicago truncatula | Orthologous gene family | many-to-1 | MT5G030500 | 1 | |
| Tree-based ortholog | 1-to-1 | MT5G030500 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT5G030500 | 1 | ||
| Oryza sativa ssp. japonica | Orthologous gene family | many-to-1 | OS10G42280 | 1 | |
| Tree-based ortholog | 1-to-1 | OS10G42280 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS10G42280 | 1 | ||
| Physcomitrella patens | Tree-based ortholog | 1-to-many | PP00052G01150 PP00001G01040 PP00231G00150 ... | 5 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PP00231G00150 PP00001G01040 PP00097G00880 ... | 4 | ||
| Populus trichocarpa | Orthologous gene family | many-to-many | PT01G14250 PT03G09170 | 2 | |
| Tree-based ortholog | 1-to-many | PT03G09170 PT01G14250 | 2 | ||
| Anchor point | 1-to-1 | PT01G14250 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PT03G09170 PT01G14250 | 2 | ||
| Prunus persica | Orthologous gene family | many-to-1 | PPE_005G04040 | 1 | |
| Tree-based ortholog | 1-to-1 | PPE_005G04040 | 1 | ||
| Anchor point | 1-to-1 | PPE_005G04040 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_005G04040 | 1 | ||
| Ricinus communis | Orthologous gene family | many-to-1 | RC29827G00060 | 1 | |
| Tree-based ortholog | 1-to-1 | RC29827G00060 | 1 | ||
| Anchor point | 1-to-1 | RC29827G00060 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC29827G00060 | 1 | ||
| Solanum lycopersicum | Orthologous gene family | many-to-1 | SL08G076960 | 1 | |
| Tree-based ortholog | 1-to-many | SL06G061180 SL08G076960 | 2 | ||
| Anchor point | 1-to-many | SL08G076960 SL06G061180 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL08G076960 | 1 | ||
| Solanum tuberosum | Orthologous gene family | many-to-1 | ST08G021300 | 1 | |
| Tree-based ortholog | 1-to-many | ST06G021350 ST08G021300 | 2 | ||
| Anchor point | 1-to-many | ST06G021350 ST08G021300 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST08G021300 | 1 | ||
| Thellungiella parvula | Orthologous gene family | many-to-1 | TP2G11600 | 1 | |
| Tree-based ortholog | 1-to-1 | TP7G16250 | 1 | ||
| Anchor point | 1-to-many | TP2G11600 TP7G16250 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP7G16250 | 1 | ||
| Theobroma cacao | Orthologous gene family | many-to-1 | TC0003G22680 | 1 | |
| Tree-based ortholog | 1-to-1 | TC0003G22680 | 1 | ||
| Anchor point | 1-to-1 | TC0003G22680 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TC0003G22680 | 1 | ||
| Vitis vinifera | Orthologous gene family | many-to-1 | VV02G02300 | 1 | |
| Tree-based ortholog | 1-to-1 | VV02G02300 | 1 | ||
| Anchor point | 1-to-1 | VV02G02300 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV02G02300 | 1 | ||
| Zea mays | Orthologous gene family | many-to-many | ZM01G22200 ZM09G17470 | 2 | |
| Tree-based ortholog | 1-to-many | ZM09G17470 ZM01G22200 | 2 | ||
| Anchor point | 1-to-1 | ZM01G22200 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | ZM09G17470 ZM01G22200 | 2 |