Monocots PLAZA 4.5 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	Homologous gene family	Orthologous gene family	E-value	Bitscore	Alignment Length	Identity Percentage
Zm00001d013100	Zea mays B73	HOM04x5M007573	ORTHO04x5M009717	1.9e-217	757.7	430	100.0
Zm00007a00047457	Zea mays B104	HOM04x5M007573	ORTHO04x5M009717	5.2e-170	600.1	430	85.6
Zm00008a019244	Zea mays PH207	HOM04x5M007573	ORTHO04x5M009717	5.2e-170	600.1	430	85.6
Misin01G055600	Miscanthus sinensis	HOM04x5M007573	ORTHO04x5M009717	1.1e-116	422.9	317	84.5
Sspon.01G0029910-2D	Saccharum spontaneum	HOM04x5M007573	ORTHO04x5M009717	2.4e-114	415.2	420	68.1
Sspon.01G0029910-1A	Saccharum spontaneum	HOM04x5M007573	ORTHO04x5M009717	2.2e-112	408.7	420	67.4
Sobic.001G063100	Sorghum bicolor	HOM04x5M007573	ORTHO04x5M009717	2.5e-111	405.2	317	81.4
Misin02G040400	Miscanthus sinensis	HOM04x5M007573	ORTHO04x5M009717	7.9e-110	400.2	325	80.0
Seita.9G062200	Setaria italica	HOM04x5M007573	ORTHO04x5M009717	7.2e-103	377.1	319	74.3
Zm00007a00016215	Zea mays B104	HOM04x5M007573	ORTHO04x5M009717	1.1e-100	369.8	403	65.5
Zm00001d034380	Zea mays B73	HOM04x5M007573	ORTHO04x5M009717	1.3e-99	366.3	325	76.9
PH01000458G0270	Phyllostachys edulis	HOM04x5M007573	ORTHO04x5M009717	5.9e-89	330.9	320	66.6
Zm00008a005426	Zea mays PH207	HOM04x5M007573	ORTHO04x5M009717	3.1e-82	308.5	222	81.1
Zjn_sc00014.1.g06900.1.am.mkhc	Zoysia japonica ssp. nagirizaki	HOM04x5M007573	ORTHO04x5M009717	1.2e-76	290.0	318	59.1
TraesCS5B02G429000	Triticum aestivum	HOM04x5M007573	ORTHO04x5M009717	4.2e-71	271.6	278	62.6
TRITD5Bv1G212160	Triticum turgidum	HOM04x5M007573	ORTHO04x5M009717	5.5e-71	271.2	280	62.9
Pgl_GLEAN_10033819	Cenchrus americanus	HOM04x5M007573	ORTHO04x5M009717	2.1e-70	269.2	229	72.1
LOC_Os03g57530	Oryza sativa ssp. japonica	HOM04x5M007573	ORTHO04x5M009717	1.4e-69	266.5	323	58.8
OsR498G0307179400.01	Oryza sativa ssp. indica	HOM04x5M007573	ORTHO04x5M009717	1.4e-69	266.5	323	58.8
HORVU5Hr1G103790	Hordeum vulgare	HOM04x5M007573	ORTHO04x5M009717	1.2e-68	263.5	329	55.3
Bradi1g06250	Brachypodium distachyon	HOM04x5M007573	ORTHO04x5M009717	2.9e-64	248.8	320	56.9
TraesCS5A02G427100	Triticum aestivum	HOM04x5M007573	ORTHO04x5M009717	9.5e-63	243.8	280	57.9
TRITD5Av1G215750	Triticum turgidum	HOM04x5M007573	ORTHO04x5M009717	2.7e-62	242.3	280	57.5
TraesCS5D02G435000	Triticum aestivum	HOM04x5M007573	ORTHO04x5M009717	6.1e-62	241.1	280	57.9
LP029224	Lolium perenne	HOM04x5M007573	ORTHO04x5M009717	3.5e-57	225.3	323	51.7
Zjn_sc00013.1.g06640.1.sm.mk	Zoysia japonica ssp. nagirizaki	HOM04x5M007573	ORTHO04x5M009717	1.7e-56	223.0	243	60.5
LP037141	Lolium perenne	HOM04x5M007573	ORTHO04x5M009717	1.6e-41	173.3	309	44.7
TraesCS2A02G248000	Triticum aestivum	HOM04x5M007573	ORTHO04x5M009717	5.6e-39	164.9	369	40.4
OB03G43760	Oryza brachyantha	HOM04x5M007573	ORTHO04x5M009717	4.0e-37	158.7	230	49.1
TraesCS5D02G268100	Triticum aestivum	HOM04x5M007573	ORTHO04x5M009717	1.4e-34	150.2	313	42.8
TraesCS5B02G259000	Triticum aestivum	HOM04x5M007573	ORTHO04x5M009717	4.1e-34	148.7	306	42.8
PH01249411G0010	Phyllostachys edulis	HOM04x5M007573	ORTHO04x5M009717	1.0e-32	144.1	138	66.7
OsR498G0713568600.01	Oryza sativa ssp. indica	HOM04x5M007573	ORTHO04x5M009717	5.8e-28	128.3	229	47.2
Seita.8G028900	Setaria italica	HOM04x5M007573	ORTHO04x5M009717	1.0e-24	117.5	284	39.4
Zjn_sc00051.1.g01820.1.am.mk	Zoysia japonica ssp. nagirizaki	HOM04x5M002876	ORTHO04x5M003544	4.0e-21	105.5	233	41.6
LOC_Os07g06810	Oryza sativa ssp. japonica	HOM04x5M007573	ORTHO04x5M009717	1.2e-20	104.0	214	43.5
PEQU_13390	Phalaenopsis equestris	HOM04x5M001892	ORTHO04x5M002029	1.1e-13	80.9	353	30.6
TRITD2Av1G133040	Triticum turgidum	HOM04x5M007573	ORTHO04x5M009717	2.0e-12	76.6	167	38.9
ASH_gene10223	Apostasia shenzhenica	HOM04x5M001892	ORTHO04x5M002029	2.9e-11	72.8	301	32.2
CALSI_Maker00029459	Calamus simplicifolius	HOM04x5M001892	ORTHO04x5M002029	6.4e-11	71.6	326	30.4
Spipo24G0030700	Spirodela polyrhiza	HOM04x5M001892	ORTHO04x5M002029	2.4e-10	69.7	343	29.7
evm.TU.AsparagusV1_03.437.V1.1	Asparagus officinalis	HOM04x5M001892	ORTHO04x5M002029	7.1e-10	68.2	347	30.0
Misin11G103400	Miscanthus sinensis	HOM04x5M007573	ORTHO04x5M117004	2.1e-09	66.6	155	43.9
p5.00_sc02709_p0001	Elaeis guineensis	HOM04x5M001892	ORTHO04x5M002029	6.0e-09	65.1	380	29.5
Ma04_g29270	Musa acuminata	HOM04x5M001892	ORTHO04x5M002029	1.8e-08	63.5	415	29.2
CALSI_Maker00009579	Calamus simplicifolius	HOM04x5M001892	ORTHO04x5M002029	1.1e-07	60.8	381	28.9
GSVIVG01022511001	Vitis vinifera	HOM04x5M001892	ORTHO04x5M002029	4.3e-07	58.9	298	27.2
Zjn_sc00055.1.g01090.1.am.mk	Zoysia japonica ssp. nagirizaki	HOM04x5M001892	ORTHO04x5M002029	1.6e-06	57.0	136	41.2
Bradi1g56922	Brachypodium distachyon	HOM04x5M007573	ORTHO04x5M009717	2.8e-06	56.2	76	51.3
Bradi4g15750	Brachypodium distachyon	HOM04x5M001892	ORTHO04x5M002029	6.2e-06	55.1	141	39.7
PH01000510G0710	Phyllostachys edulis	HOM04x5M000670	ORTHO04x5M000562	6.2e-06	55.1	122	38.5

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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