Monocots PLAZA 4.5 : Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	Homologous gene family	Orthologous gene family	E-value	Bitscore	Alignment Length	Identity Percentage
Oropetium_20150105_14821	Oropetium thomaeum	HOM04x5M002570	ORTHO04x5M002687	1.4e-23	111.3	80	100.0
Seita.6G206100	Setaria italica	HOM04x5M002570	ORTHO04x5M002687	1.8e-12	74.3	80	76.2
TraesCS7B02G144300	Triticum aestivum	HOM04x5M002570	ORTHO04x5M002687	9.2e-12	72.0	79	53.2
TraesCS7A02G247200	Triticum aestivum	HOM04x5M002570	ORTHO04x5M002687	1.6e-11	71.2	78	53.8
TraesCS7D02G245800	Triticum aestivum	HOM04x5M002570	ORTHO04x5M002687	1.6e-11	71.2	78	53.8
HORVU7Hr1G050770	Hordeum vulgare	HOM04x5M002570	ORTHO04x5M002687	5.9e-11	69.3	78	52.6
LOC_Os08g39980	Oryza sativa ssp. japonica	HOM04x5M002570	ORTHO04x5M002687	2.9e-10	67.0	81	64.2
OsR498G0816445800.01	Oryza sativa ssp. indica	HOM04x5M002570	ORTHO04x5M002687	2.9e-10	67.0	81	64.2
Misin13G182000	Miscanthus sinensis	HOM04x5M002570	ORTHO04x5M002687	1.5e-09	64.7	80	52.5
Sobic.007G209500	Sorghum bicolor	HOM04x5M002570	ORTHO04x5M002687	1.5e-09	64.7	80	52.5
Zm00001d031454	Zea mays B73	HOM04x5M002570	ORTHO04x5M002687	4.3e-09	63.2	80	51.2
Zm00007a00022852	Zea mays B104	HOM04x5M002570	ORTHO04x5M002687	4.3e-09	63.2	80	51.2
LP013034	Lolium perenne	HOM04x5M002570	ORTHO04x5M002687	7.3e-09	62.4	78	50.0
Misin07G233600	Miscanthus sinensis	HOM04x5M002570	ORTHO04x5M002687	7.3e-09	62.4	82	74.4
Ma09_g18710	Musa acuminata	HOM04x5M002570	ORTHO04x5M002687	1.2e-08	61.6	79	49.4
Sspon.06G0001740-1A	Saccharum spontaneum	HOM04x5M002570	ORTHO04x5M002687	1.2e-08	61.6	80	50.0
Sspon.06G0001740-2D	Saccharum spontaneum	HOM04x5M002570	ORTHO04x5M002687	1.2e-08	61.6	80	50.0
Ma08_g26310	Musa acuminata	HOM04x5M002570	ORTHO04x5M002687	1.6e-08	61.2	80	46.2
Bradi3g40060	Brachypodium distachyon	HOM04x5M002570	ORTHO04x5M002687	2.8e-08	60.5	81	48.1
p5.00_sc00037_p0129	Elaeis guineensis	HOM04x5M002570	ORTHO04x5M002687	3.6e-08	60.1	84	67.9
MisinT266000	Miscanthus sinensis	HOM04x5M002570	ORTHO04x5M002687	3.6e-08	60.1	80	56.2
p5.00_sc00096_p0028	Elaeis guineensis	HOM04x5M002570	ORTHO04x5M002687	8.0e-08	58.9	79	46.8
Ma09_g28270	Musa acuminata	HOM04x5M002570	ORTHO04x5M002687	1.0e-07	58.5	80	43.8
TraesCS5D02G274400	Triticum aestivum	HOM04x5M002570	ORTHO04x5M002687	1.0e-07	58.5	82	54.9
LOC_Os09g31454	Oryza sativa ssp. japonica	HOM04x5M002570	ORTHO04x5M002687	1.4e-07	58.2	83	67.5
OsR498G0917730800.01	Oryza sativa ssp. indica	HOM04x5M002570	ORTHO04x5M002687	1.4e-07	58.2	83	66.3
p5.00_sc00131_p0015	Elaeis guineensis	HOM04x5M002570	ORTHO04x5M002687	1.8e-07	57.8	78	46.2
TraesCS5A02G266600	Triticum aestivum	HOM04x5M002570	ORTHO04x5M002687	1.8e-07	57.8	84	60.7
p5.00_sc00020_p0160	Elaeis guineensis	HOM04x5M002570	ORTHO04x5M002687	4.0e-07	56.6	80	45.0
HORVU5Hr1G073540	Hordeum vulgare	HOM04x5M002570	ORTHO04x5M002687	5.2e-07	56.2	83	44.6
HORVU5Hr1G073580	Hordeum vulgare	HOM04x5M002570	ORTHO04x5M002687	5.2e-07	56.2	83	44.6
Sobic.002G248600	Sorghum bicolor	HOM04x5M002570	ORTHO04x5M002687	6.8e-07	55.8	80	45.0
Zm00001d020947	Zea mays B73	HOM04x5M002570	ORTHO04x5M002687	6.8e-07	55.8	80	45.0
Zm00007a00035265	Zea mays B104	HOM04x5M002570	ORTHO04x5M002687	6.8e-07	55.8	80	45.0
Zm00008a028437	Zea mays PH207	HOM04x5M002570	ORTHO04x5M002687	6.8e-07	55.8	80	45.0
Misin04G229900	Miscanthus sinensis	HOM04x5M002570	ORTHO04x5M002687	8.9e-07	55.5	81	65.4
Sspon.02G0037080-1B	Saccharum spontaneum	HOM04x5M002570	ORTHO04x5M002687	8.9e-07	55.5	80	45.0
ATR0605G388	Amborella trichopoda	HOM04x5M002570	ORTHO04x5M002687	1.2e-06	55.1	90	55.6
Sspon.02G0037080-3D	Saccharum spontaneum	HOM04x5M002570	ORTHO04x5M002687	1.2e-06	55.1	81	61.7
Sspon.02G0037080-2C	Saccharum spontaneum	HOM04x5M002570	ORTHO04x5M002687	1.2e-06	55.1	81	61.7
Zjn_sc00008.1.g09320.1.am.mk	Zoysia japonica ssp. nagirizaki	HOM04x5M002412	ORTHO04x5M002551	1.2e-06	55.1	82	43.9
Bradi4g33820	Brachypodium distachyon	HOM04x5M002570	ORTHO04x5M002687	1.5e-06	54.7	79	43.0
Ma09_g12020	Musa acuminata	HOM04x5M002570	ORTHO04x5M002687	1.5e-06	54.7	80	43.8
TraesCS5B02G266200	Triticum aestivum	HOM04x5M002570	ORTHO04x5M002687	1.5e-06	54.7	82	54.9
TRITD5Bv1G149570	Triticum turgidum	HOM04x5M002570	ORTHO04x5M002687	1.5e-06	54.7	82	54.9
CALSI_Maker00032927	Calamus simplicifolius	HOM04x5M002570	ORTHO04x5M002687	2.0e-06	54.3	81	43.2
Seita.2G254700	Setaria italica	HOM04x5M002570	ORTHO04x5M002687	2.0e-06	54.3	80	43.8
CALSI_Maker00014448	Calamus simplicifolius	HOM04x5M002570	ORTHO04x5M002687	3.4e-06	53.5	79	43.0
CALSI_Maker00038910	Calamus simplicifolius	HOM04x5M002570	ORTHO04x5M002687	4.4e-06	53.1	80	43.8
OB09G21390	Oryza brachyantha	HOM04x5M002570	ORTHO04x5M002687	4.4e-06	53.1	88	53.4

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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