Monocots PLAZA 4.5 : Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	Homologous gene family	Orthologous gene family	E-value	Bitscore	Alignment Length	Identity Percentage
OB03G43760	Oryza brachyantha	HOM04x5M007573	ORTHO04x5M009717	4.0e-91	337.4	272	100.0
LOC_Os03g57530	Oryza sativa ssp. japonica	HOM04x5M007573	ORTHO04x5M009717	5.4e-80	300.4	274	73.0
OsR498G0307179400.01	Oryza sativa ssp. indica	HOM04x5M007573	ORTHO04x5M009717	5.4e-80	300.4	274	73.0
Seita.9G062200	Setaria italica	HOM04x5M007573	ORTHO04x5M009717	2.8e-68	261.5	272	61.0
Misin01G055600	Miscanthus sinensis	HOM04x5M007573	ORTHO04x5M009717	1.4e-67	259.2	279	55.9
TraesCS5B02G429000	Triticum aestivum	HOM04x5M007573	ORTHO04x5M009717	4.9e-65	250.8	277	57.4
TRITD5Bv1G212160	Triticum turgidum	HOM04x5M007573	ORTHO04x5M009717	6.4e-65	250.4	277	57.4
LP029224	Lolium perenne	HOM04x5M007573	ORTHO04x5M009717	2.4e-64	248.4	282	66.0
Zm00001d034380	Zea mays B73	HOM04x5M007573	ORTHO04x5M009717	3.5e-63	244.6	289	57.4
Misin02G040400	Miscanthus sinensis	HOM04x5M007573	ORTHO04x5M009717	6.0e-63	243.8	284	57.0
TraesCS5D02G435000	Triticum aestivum	HOM04x5M007573	ORTHO04x5M009717	8.1e-60	233.4	274	54.7
Bradi1g06250	Brachypodium distachyon	HOM04x5M007573	ORTHO04x5M009717	6.8e-59	230.3	276	69.2
TraesCS5A02G427100	Triticum aestivum	HOM04x5M007573	ORTHO04x5M009717	5.8e-58	227.3	276	51.8
TRITD5Av1G215750	Triticum turgidum	HOM04x5M007573	ORTHO04x5M009717	4.9e-57	224.2	276	51.4
HORVU5Hr1G103790	Hordeum vulgare	HOM04x5M007573	ORTHO04x5M009717	2.3e-54	215.3	264	53.8
Zm00007a00047457	Zea mays B104	HOM04x5M007573	ORTHO04x5M009717	9.9e-42	173.3	241	47.7
Zm00008a019244	Zea mays PH207	HOM04x5M007573	ORTHO04x5M009717	9.9e-42	173.3	241	47.7
Zjn_sc00014.1.g06900.1.am.mkhc	Zoysia japonica ssp. nagirizaki	HOM04x5M007573	ORTHO04x5M009717	1.7e-41	172.6	229	54.6
Zm00001d013100	Zea mays B73	HOM04x5M007573	ORTHO04x5M009717	2.2e-41	172.2	230	49.1
PH01000458G0270	Phyllostachys edulis	HOM04x5M007573	ORTHO04x5M009717	6.4e-41	170.6	226	52.2
Sspon.01G0029910-2D	Saccharum spontaneum	HOM04x5M007573	ORTHO04x5M009717	5.4e-40	167.5	237	51.5
Sspon.01G0029910-1A	Saccharum spontaneum	HOM04x5M007573	ORTHO04x5M009717	1.2e-39	166.4	237	51.9
Pgl_GLEAN_10033819	Cenchrus americanus	HOM04x5M007573	ORTHO04x5M009717	1.6e-39	166.0	227	56.8
Sobic.001G063100	Sorghum bicolor	HOM04x5M007573	ORTHO04x5M009717	2.7e-39	165.2	233	53.6
Zm00007a00016215	Zea mays B104	HOM04x5M007573	ORTHO04x5M009717	6.0e-39	164.1	250	51.2
Zm00008a005426	Zea mays PH207	HOM04x5M007573	ORTHO04x5M009717	5.5e-32	141.0	224	50.0
LP037141	Lolium perenne	HOM04x5M007573	ORTHO04x5M009717	2.0e-26	122.5	272	36.0
PH01249411G0010	Phyllostachys edulis	HOM04x5M007573	ORTHO04x5M009717	4.2e-24	114.8	64	95.3
OsR498G0713568600.01	Oryza sativa ssp. indica	HOM04x5M007573	ORTHO04x5M009717	3.9e-22	108.2	254	36.6
Zjn_sc00013.1.g06640.1.sm.mk	Zoysia japonica ssp. nagirizaki	HOM04x5M007573	ORTHO04x5M009717	3.7e-20	101.7	168	47.0
TraesCS2A02G248000	Triticum aestivum	HOM04x5M007573	ORTHO04x5M009717	2.9e-17	92.0	291	32.6
TraesCS5B02G259000	Triticum aestivum	HOM04x5M007573	ORTHO04x5M009717	7.9e-15	84.0	296	32.8
TraesCS5D02G268100	Triticum aestivum	HOM04x5M007573	ORTHO04x5M009717	8.2e-12	73.9	225	34.2
Seita.8G028900	Setaria italica	HOM04x5M007573	ORTHO04x5M009717	1.4e-11	73.2	61	63.9
Zjn_sc00051.1.g01820.1.am.mk	Zoysia japonica ssp. nagirizaki	HOM04x5M002876	ORTHO04x5M003544	1.2e-10	70.1	58	63.8
Aco008758	Ananas comosus	HOM04x5M001892	ORTHO04x5M002029	1.5e-10	69.7	149	32.2
CALSI_Maker00009579	Calamus simplicifolius	HOM04x5M001892	ORTHO04x5M002029	1.5e-10	69.7	149	29.5
p5.00_sc02709_p0001	Elaeis guineensis	HOM04x5M001892	ORTHO04x5M002029	3.4e-10	68.6	80	38.8
Ma08_g27410	Musa acuminata	HOM04x5M001892	ORTHO04x5M002029	5.0e-09	64.7	78	41.0
Aco021022	Ananas comosus	HOM04x5M001892	ORTHO04x5M002029	1.9e-08	62.8	78	38.5
LOC_Os07g06810	Oryza sativa ssp. japonica	HOM04x5M007573	ORTHO04x5M009717	1.9e-08	62.8	46	71.7
evm.TU.AsparagusV1_03.437.V1.1	Asparagus officinalis	HOM04x5M001892	ORTHO04x5M002029	3.2e-08	62.0	332	31.3
ASH_gene16335	Apostasia shenzhenica	HOM04x5M001892	ORTHO04x5M002029	4.2e-08	61.6	56	46.4
PH01000510G0710	Phyllostachys edulis	HOM04x5M000670	ORTHO04x5M000562	5.5e-08	61.2	46	73.9
Potri.016G065200	Populus trichocarpa	HOM04x5M001892	ORTHO04x5M002029	2.7e-07	58.9	78	38.5
Ma03_g15890	Musa acuminata	HOM04x5M001892	ORTHO04x5M002029	4.7e-07	58.2	78	37.2
Ma04_g29270	Musa acuminata	HOM04x5M001892	ORTHO04x5M002029	6.1e-07	57.8	80	36.2
Ma08_g04570	Musa acuminata	HOM04x5M001892	ORTHO04x5M002029	7.9e-07	57.4	309	25.6
Potri.006G199000	Populus trichocarpa	HOM04x5M001892	ORTHO04x5M002029	1.0e-06	57.0	77	37.7
evm.TU.AsparagusV1_01.3380.V1.1	Asparagus officinalis	HOM04x5M001892	ORTHO04x5M002029	1.8e-06	56.2	88	38.6
CALSI_Maker00034293	Calamus simplicifolius	HOM04x5M001892	ORTHO04x5M002029	3.0e-06	55.5	68	39.7
Solyc11g045480.1	Solanum lycopersicum	HOM04x5M001892	ORTHO04x5M002029	3.9e-06	55.1	77	31.2
Ma01_g07720	Musa acuminata	HOM04x5M001892	ORTHO04x5M002029	5.1e-06	54.7	78	35.9

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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