Pico-PLAZA 3.0 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
SPCC1840.02c	Schizosaccharomyces pombe	0.0	4064	1956	100.00
SPAC24C9.07c	Schizosaccharomyces pombe	0.0	2246	1862	60.42
YGR032W	Saccharomyces cerevisiae strain S288C	0.0	2222	1947	56.29
SPBC19G7.05c	Schizosaccharomyces pombe	0.0	1959	1707	56.41
SPAC19B12.03	Schizosaccharomyces pombe	0.0	1914	1751	54.43
YMR306W	Saccharomyces cerevisiae strain S288C	0.0	1773	1806	49.00
TP15G03070	Thalassiosira pseudonana	6e-108	367	720	32.92
FC006G05790	Fragilariopsis cylindrus	2e-97	335	722	31.30
PTI_01G09760	Phaeodactylum tricornutum	1e-95	349	723	32.23
AT5G13000	Arabidopsis thaliana	2e-95	348	735	33.06
phs146640	Phytophtora sojae	2e-95	348	766	32.11
phs238450	Phytophtora sojae	4e-95	348	719	32.96
Naga_100114g16	Nannochloropsis gaditana	1e-94	347	729	32.92
AT3G07160	Arabidopsis thaliana	3e-93	341	723	32.50
phs82470	Phytophtora sojae	4e-93	341	745	31.28
PP00040G00860	Physcomitrella patens	7e-93	335	764	30.76
PP00018G01510	Physcomitrella patens	7e-93	334	736	31.25
emh730310	Emiliania huxleyi	1e-92	335	745	32.35
OS03G03610	Oryza sativa	2e-92	338	748	32.62
AT1G06490	Arabidopsis thaliana	1e-91	336	735	32.11
ATR_00044G00620	Amborella trichopoda	1e-91	331	754	31.43
PP00145G00210	Physcomitrella patens	2e-91	335	742	31.54
ATR_00150G00050	Amborella trichopoda	2e-91	335	728	30.91
ATR_00011G00280	Amborella trichopoda	4e-91	334	740	32.16
PI00G08770	Picochlorum sp. SENEW3 (SE3)	3e-90	332	792	30.93
OS01G55040	Oryza sativa	4e-90	331	779	30.42
RCC4223.14g01130	Picochlorum_RCC4223	6e-90	331	793	31.02
AA0010G01540	Aureococcus anophagefferens	2e-89	329	746	32.44
OS02G58560	Oryza sativa	6e-89	317	730	31.10
PP00199G00060	Physcomitrella patens	7e-89	327	739	30.04
OS06G08380	Oryza sativa	7e-89	327	743	31.63
AT4G03550	Arabidopsis thaliana	7e-89	327	773	30.01
VC00G111040	Volvox carteri	9e-89	326	812	30.42
AT4G04970	Arabidopsis thaliana	9e-89	326	786	31.17
AT2G36850	Arabidopsis thaliana	1e-88	326	762	31.89
PP00067G00310	Physcomitrella patens	2e-88	325	746	30.70
ATR_00044G00690	Amborella trichopoda	2e-88	325	735	30.75
AT5G36870	Arabidopsis thaliana	3e-88	325	731	31.19
AA0005G00700	Aureococcus anophagefferens	4e-88	298	363	44.90
CR03G12300	Chlamydomonas reinhardtii	5e-88	325	789	31.05
ATR_00111G01340	Amborella trichopoda	6e-88	324	758	31.93
PP00066G00390	Physcomitrella patens	7e-88	323	747	31.99
AT2G13680	Arabidopsis thaliana	9e-88	323	739	30.58
CR13G03020	Chlamydomonas reinhardtii	3e-87	323	775	31.35
AT1G05570	Arabidopsis thaliana	3e-87	322	744	30.78
ES0033G00630	Ectocarpus siliculosus	9e-87	320	766	29.77
PP00379G00150	Physcomitrella patens	1e-86	319	753	30.68
AT3G59100	Arabidopsis thaliana	2e-86	319	732	31.15
ATR_00014G00100	Amborella trichopoda	2e-86	316	712	30.62
ATR_00058G01100	Amborella trichopoda	4e-86	318	772	29.66
PP00067G01020	Physcomitrella patens	7e-86	317	838	29.59
PP00013G00660	Physcomitrella patens	9e-86	317	775	29.55
phs236130	Phytophtora sojae	1e-85	317	766	28.59
PP00088G00680	Physcomitrella patens	1e-85	316	746	29.36
VC00G11170	Volvox carteri	2e-85	317	786	30.66
PP00160G00410	Physcomitrella patens	3e-85	315	751	30.23
phs233390	Phytophtora sojae	8e-85	314	701	32.38
OS06G51270	Oryza sativa	1e-84	313	747	30.79
AT2G31960	Arabidopsis thaliana	2e-84	313	774	30.88
VC00G146760	Volvox carteri	1e-83	311	841	30.20
PP00013G02320	Physcomitrella patens	4e-83	308	756	31.08
phs236150	Phytophtora sojae	5e-83	308	774	27.91
AT3G14570	Arabidopsis thaliana	5e-82	305	742	31.54
CR03G09350	Chlamydomonas reinhardtii	3e-80	300	828	29.71
AP00G01550	Auxenochlorella protothecoides	4e-79	295	823	29.40
phs58400	Phytophtora sojae	1e-78	295	674	28.78
VC00G147070	Volvox carteri	3e-74	280	488	35.45
emh730290	Emiliania huxleyi	6e-74	278	745	30.47
OS02G14900	Oryza sativa	1e-73	276	594	31.14
OM_06G01820	Ostreococcus mediterraneus	2e-73	278	737	29.31
OT_07G01680	Ostreococcus tauri	1e-72	275	797	26.85
MRCC299_02G03970	Micromonas sp RCC299	7e-72	262	718	29.11
OL07G01670	Ostreococcus lucimarinus	7e-70	255	713	28.89
ORCC809_07G02000	Ostreococcus sp RCC809	1e-68	262	720	27.50
BPRRCC1105_02G04070	Bathycoccus prasinos	2e-68	261	757	27.08
HE0000G48050	Helicosporidium sp.	2e-62	234	472	32.84
CR04G01710	Chlamydomonas reinhardtii	1e-59	232	485	31.96
CR06G13730	Chlamydomonas reinhardtii	6e-56	220	457	31.73
CR03G09610	Chlamydomonas reinhardtii	3e-48	195	406	35.47
emh705430	Emiliania huxleyi	2e-46	189	456	28.51
CR03G09680	Chlamydomonas reinhardtii	4e-46	188	389	36.25
emh686490	Emiliania huxleyi	7e-43	177	638	25.86
MRCC299_02G03980	Micromonas sp RCC299	3e-42	166	395	32.15
ES1232G00010	Ectocarpus siliculosus	2e-35	142	251	35.06
OS01G34890	Oryza sativa	7e-34	147	399	31.08
ES0338G00020	Ectocarpus siliculosus	6e-33	144	321	29.28
OL07G01680	Ostreococcus lucimarinus	3e-27	117	206	33.01
OS01G34930	Oryza sativa	3e-26	119	307	28.99
phs238430	Phytophtora sojae	7e-25	118	275	31.27
OS01G34880	Oryza sativa	6e-22	105	312	28.53
OS01G48200	Oryza sativa	3e-19	97.1	277	28.52
CNC64A_009G01510	Chlorella sp NC64A	7e-16	88.6	304	26.64
ES0193G00230	Ectocarpus siliculosus	1e-14	84.3	220	32.73
ATR_00044G00630	Amborella trichopoda	4e-11	72.4	194	27.84
OS06G02260	Oryza sativa	5e-08	62.0	273	23.44
ATR_00014G00090	Amborella trichopoda	2e-06	56.6	107	34.58

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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