Ks-graphs  

The Ks-graphs tool allows you to overlay several Ks graphs of colinear gene pairs.

Experiment options

#Comparisons

1234

Comparison 1

Collinearity Run

comparison_all_species_pico03_no_dating comparison_picochlorum_with_dating comparison_ostreococcus_with_dating comparison_marmiellales_with_dating comparison_trebouxiophyceae_with_dating comparison_red_algae_with_dating

Organism 1

Amborella trichopoda Arabidopsis thaliana Asterochloris sp. Cgr-DA1pho v2.0 Aureococcus anophagefferens Auxenochlorella protothecoides Bathycoccus prasinos Caenorhabditis elegans Chlamydomonas reinhardtii Chlorella sp NC64A Chondrus crispus Coccomyxa subellipsoidea C-169 Cyanidioschyzon merolae Dictyostelium discoideum Drosophila melanogaster Ectocarpus siliculosus Emiliania huxleyi Fragilariopsis cylindrus Galdieria sulphuraria Helicosporidium sp. Homo sapiens Micromonas pusilla strain CCMP1545 Micromonas sp RCC299 Mus musculus Nannochloropsis gaditana Oryza sativa Ostreococcus lucimarinus Ostreococcus mediterraneus Ostreococcus sp RCC809 Ostreococcus tauri Paramecium tetraurelia Phaeodactylum tricornutum Physcomitrella patens Phytophtora sojae Picochlorum sp. SENEW3 (SE3) Picochlorum_RCC4223 Saccharomyces cerevisiae strain S288C Schizosaccharomyces pombe Thalassiosira pseudonana Volvox carteri

Organism 2

Amborella trichopoda Arabidopsis thaliana Asterochloris sp. Cgr-DA1pho v2.0 Aureococcus anophagefferens Auxenochlorella protothecoides Bathycoccus prasinos Caenorhabditis elegans Chlamydomonas reinhardtii Chlorella sp NC64A Chondrus crispus Coccomyxa subellipsoidea C-169 Cyanidioschyzon merolae Dictyostelium discoideum Drosophila melanogaster Ectocarpus siliculosus Emiliania huxleyi Fragilariopsis cylindrus Galdieria sulphuraria Helicosporidium sp. Homo sapiens Micromonas pusilla strain CCMP1545 Micromonas sp RCC299 Mus musculus Nannochloropsis gaditana Oryza sativa Ostreococcus lucimarinus Ostreococcus mediterraneus Ostreococcus sp RCC809 Ostreococcus tauri Paramecium tetraurelia Phaeodactylum tricornutum Physcomitrella patens Phytophtora sojae Picochlorum sp. SENEW3 (SE3) Picochlorum_RCC4223 Saccharomyces cerevisiae strain S288C Schizosaccharomyces pombe Thalassiosira pseudonana Volvox carteri

Plot options

Bin size

0.1 0.05

Figure style

lines bar

Normalization

on off

Max Ks value

1 2 3 4 5