Pico-PLAZA 3.0 : Interactive Phylogenetics Module

Interactive Phylogenetics Module

Gene Id: AT2G39140

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Email Address (optional)

Genes

Notice (8): Undefined index: common_name [APP/View/Analysis/custom_tree_creation.ctp, line 169]Code Context                                                    echo "<td><input type='checkbox' name='selected_genes[]' value='".$similarity_hit['gene_id']."' ".$checked." /></td>\n";
                                                    echo "<td>".$this->Html->link($similarity_hit_gene,array("controller"=>"genes","action"=>"view",$similarity_hit_gene),array("target"=>"_blank"))."</td>\n";
                                                    echo "<td>".$this->Html->link($similarity_hit['common_name'],array("controller"=>"organism","action"=>"view",urlencode($similarity_hit['common_name'])))."</td>\n";
$viewFile = '/xtras/group/biocomp/plaza/versions/plaza_pico_03/app/View/Analysis/custom_tree_creation.ctp'
$dataForView = array(
	'allowed_extra_sequences_types' => array(
		'aa' => 'Protein',
		'dna' => 'DNA'
	),
	'allowed_editing_methods' => array(
		'column' => 'Positions only',
		'row' => 'Genes only',
		'column_row' => 'Positions and Genes',
		'none' => 'No editing'
	),
	'allowed_tree_programs' => array(
		'fasttree' => 'FastTree',
		'iqtree' => 'IQ-TREE (includes model testing)',
		'raxml' => 'RAxML',
		'phyml' => 'PhyML'
	),
	'allowed_msa_programs' => array(
		'muscle' => 'MUSCLE',
		'mafft' => 'MAFFT'
	),
	'allowed_number_blasthits' => array(
		(int) 0 => 'all',
		(int) 1 => (int) 20,
		(int) 2 => (int) 10,
		(int) 3 => (int) 5,
		(int) 4 => (int) 1
	),
	'similarity_hits_genes' => array(
		'AT2G39140' => array(
			'gene_id' => 'AT2G39140',
			'e_value' => '0.0',
			'bit_score' => '838',
			'alignment_length' => '411',
			'identity_percentage' => '100.00',
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ATR_00161G00240' => array(
			'gene_id' => 'ATR_00161G00240',
			'e_value' => '6e-141',
			'bit_score' => '415',
			'alignment_length' => '339',
			'identity_percentage' => '64.01',
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OS03G05806' => array(
			'gene_id' => 'OS03G05806',
			'e_value' => '9e-128',
			'bit_score' => '382',
			'alignment_length' => '359',
			'identity_percentage' => '56.82',
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PP00075G00270' => array(
			'gene_id' => 'PP00075G00270',
			'e_value' => '3e-109',
			'bit_score' => '333',
			'alignment_length' => '296',
			'identity_percentage' => '57.09',
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'MRCC299_08G01570' => array(
			'gene_id' => 'MRCC299_08G01570',
			'e_value' => '2e-69',
			'bit_score' => '226',
			'alignment_length' => '257',
			'identity_percentage' => '47.08',
			'species' => 'mrcc299',
			'common_name' => 'Micromonas sp RCC299',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OT_06G04650' => array(
			'gene_id' => 'OT_06G04650',
			'e_value' => '9e-65',
			'bit_score' => '219',
			'alignment_length' => '247',
			'identity_percentage' => '44.94',
			'species' => 'ota',
			'common_name' => 'Ostreococcus tauri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CV00G42670' => array(
			'gene_id' => 'CV00G42670',
			'e_value' => '2e-64',
			'bit_score' => '214',
			'alignment_length' => '251',
			'identity_percentage' => '46.61',
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OM_05G04760' => array(
			'gene_id' => 'OM_05G04760',
			'e_value' => '5e-61',
			'bit_score' => '209',
			'alignment_length' => '271',
			'identity_percentage' => '41.70',
			'species' => 'ome',
			'common_name' => 'Ostreococcus mediterraneus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'VC00G99160' => array(
			'gene_id' => 'VC00G99160',
			'e_value' => '3e-60',
			'bit_score' => '206',
			'alignment_length' => '256',
			'identity_percentage' => '47.27',
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ORCC809_07G00090' => array(
			'gene_id' => 'ORCC809_07G00090',
			'e_value' => '4e-60',
			'bit_score' => '201',
			'alignment_length' => '231',
			'identity_percentage' => '44.59',
			'species' => 'orcc809',
			'common_name' => 'Ostreococcus sp RCC809',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'RCC4223.06g01030' => array(
			'gene_id' => 'RCC4223.06g01030',
			'e_value' => '3e-58',
			'bit_score' => '200',
			'alignment_length' => '254',
			'identity_percentage' => '44.09',
			'species' => 'prcc4223',
			'common_name' => 'Picochlorum_RCC4223',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PI00G64170' => array(
			'gene_id' => 'PI00G64170',
			'e_value' => '4e-58',
			'bit_score' => '199',
			'alignment_length' => '254',
			'identity_percentage' => '44.49',
			'species' => 'pse3',
			'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'BPRRCC1105_05G04920' => array(
			'gene_id' => 'BPRRCC1105_05G04920',
			'e_value' => '2e-57',
			'bit_score' => '199',
			'alignment_length' => '267',
			'identity_percentage' => '41.95',
			'species' => 'bprrcc1105',
			'common_name' => 'Bathycoccus prasinos',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'MP11G02340' => array(
			'gene_id' => 'MP11G02340',
			'e_value' => '7e-55',
			'bit_score' => '192',
			'alignment_length' => '276',
			'identity_percentage' => '42.39',
			'species' => 'mpu',
			'common_name' => 'Micromonas pusilla strain CCMP1545',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AC00G69930' => array(
			'gene_id' => 'AC00G69930',
			'e_value' => '9e-54',
			'bit_score' => '186',
			'alignment_length' => '251',
			'identity_percentage' => '46.22',
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AP00G63980' => array(
			'gene_id' => 'AP00G63980',
			'e_value' => '4e-51',
			'bit_score' => '180',
			'alignment_length' => '266',
			'identity_percentage' => '42.86',
			'species' => 'apr',
			'common_name' => 'Auxenochlorella protothecoides',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CR02G05760' => array(
			'gene_id' => 'CR02G05760',
			'e_value' => '3e-49',
			'bit_score' => '179',
			'alignment_length' => '188',
			'identity_percentage' => '50.53',
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OL06G04530' => array(
			'gene_id' => 'OL06G04530',
			'e_value' => '3e-48',
			'bit_score' => '170',
			'alignment_length' => '231',
			'identity_percentage' => '43.72',
			'species' => 'olu',
			'common_name' => 'Ostreococcus lucimarinus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AT3G43340' => array(
			'gene_id' => 'AT3G43340',
			'e_value' => '3e-40',
			'bit_score' => '144',
			'alignment_length' => '74',
			'identity_percentage' => '91.89',
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CNC64A_135G00010' => array(
			'gene_id' => 'CNC64A_135G00010',
			'e_value' => '8e-39',
			'bit_score' => '143',
			'alignment_length' => '180',
			'identity_percentage' => '44.44',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'HE0000G59460' => array(
			'gene_id' => 'HE0000G59460',
			'e_value' => '5e-34',
			'bit_score' => '130',
			'alignment_length' => '203',
			'identity_percentage' => '38.92',
			'species' => 'hsp',
			'common_name' => 'Helicosporidium sp. ',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'gsu36410' => array(
			'gene_id' => 'gsu36410',
			'e_value' => '9e-32',
			'bit_score' => '127',
			'alignment_length' => '252',
			'identity_percentage' => '32.94',
			'species' => 'gsu',
			'common_name' => 'Galdieria sulphuraria',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ES0187G00170' => array(
			'gene_id' => 'ES0187G00170',
			'e_value' => '1e-28',
			'bit_score' => '120',
			'alignment_length' => '252',
			'identity_percentage' => '32.54',
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'phs50290' => array(
			'gene_id' => 'phs50290',
			'e_value' => '7e-27',
			'bit_score' => '113',
			'alignment_length' => '244',
			'identity_percentage' => '33.20',
			'species' => 'phs',
			'common_name' => 'Phytophtora sojae',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'DDB_G0276449' => array(
			'gene_id' => 'DDB_G0276449',
			'e_value' => '5e-25',
			'bit_score' => '108',
			'alignment_length' => '255',
			'identity_percentage' => '32.16',
			'species' => 'ddi',
			'common_name' => 'Dictyostelium discoideum',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OT_02G05090' => array(
			'gene_id' => 'OT_02G05090',
			'e_value' => '2e-23',
			'bit_score' => '103',
			'alignment_length' => '261',
			'identity_percentage' => '29.89',
			'species' => 'ota',
			'common_name' => 'Ostreococcus tauri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'phs342110' => array(
			'gene_id' => 'phs342110',
			'e_value' => '2e-23',
			'bit_score' => '102',
			'alignment_length' => '237',
			'identity_percentage' => '32.91',
			'species' => 'phs',
			'common_name' => 'Phytophtora sojae',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'pte573810' => array(
			'gene_id' => 'pte573810',
			'e_value' => '7e-23',
			'bit_score' => '102',
			'alignment_length' => '264',
			'identity_percentage' => '29.92',
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'pte30170' => array(
			'gene_id' => 'pte30170',
			'e_value' => '1e-22',
			'bit_score' => '101',
			'alignment_length' => '263',
			'identity_percentage' => '30.80',
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ORCC809_02G00170' => array(
			'gene_id' => 'ORCC809_02G00170',
			'e_value' => '7e-22',
			'bit_score' => '98.2',
			'alignment_length' => '263',
			'identity_percentage' => '29.28',
			'species' => 'orcc809',
			'common_name' => 'Ostreococcus sp RCC809',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OM_04G03740' => array(
			'gene_id' => 'OM_04G03740',
			'e_value' => '4e-21',
			'bit_score' => '97.1',
			'alignment_length' => '278',
			'identity_percentage' => '27.34',
			'species' => 'ome',
			'common_name' => 'Ostreococcus mediterraneus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ES0012G00560' => array(
			'gene_id' => 'ES0012G00560',
			'e_value' => '3e-20',
			'bit_score' => '96.3',
			'alignment_length' => '249',
			'identity_percentage' => '32.13',
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OM_17G00310' => array(
			'gene_id' => 'OM_17G00310',
			'e_value' => '4e-20',
			'bit_score' => '95.1',
			'alignment_length' => '263',
			'identity_percentage' => '29.28',
			'species' => 'ome',
			'common_name' => 'Ostreococcus mediterraneus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OL02G06050' => array(
			'gene_id' => 'OL02G06050',
			'e_value' => '8e-20',
			'bit_score' => '92.0',
			'alignment_length' => '237',
			'identity_percentage' => '31.22',
			'species' => 'olu',
			'common_name' => 'Ostreococcus lucimarinus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'BPRRCC1105_14G02080' => array(
			'gene_id' => 'BPRRCC1105_14G02080',
			'e_value' => '1e-19',
			'bit_score' => '91.7',
			'alignment_length' => '221',
			'identity_percentage' => '34.39',
			'species' => 'bprrcc1105',
			'common_name' => 'Bathycoccus prasinos',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ORCC809_16G02390' => array(
			'gene_id' => 'ORCC809_16G02390',
			'e_value' => '3e-18',
			'bit_score' => '87.8',
			'alignment_length' => '237',
			'identity_percentage' => '30.80',
			'species' => 'orcc809',
			'common_name' => 'Ostreococcus sp RCC809',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PTI_04G00780' => array(
			'gene_id' => 'PTI_04G00780',
			'e_value' => '9e-18',
			'bit_score' => '86.7',
			'alignment_length' => '242',
			'identity_percentage' => '31.40',
			'species' => 'ptri',
			'common_name' => 'Phaeodactylum tricornutum',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PTI_10G03360' => array(
			'gene_id' => 'PTI_10G03360',
			'e_value' => '2e-17',
			'bit_score' => '87.0',
			'alignment_length' => '269',
			'identity_percentage' => '30.48',
			'species' => 'ptri',
			'common_name' => 'Phaeodactylum tricornutum',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'DDB_G0282961' => array(
			'gene_id' => 'DDB_G0282961',
			'e_value' => '3e-16',
			'bit_score' => '84.7',
			'alignment_length' => '253',
			'identity_percentage' => '28.85',
			'species' => 'ddi',
			'common_name' => 'Dictyostelium discoideum',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'MRCC299_10G05220' => array(
			'gene_id' => 'MRCC299_10G05220',
			'e_value' => '3e-16',
			'bit_score' => '81.6',
			'alignment_length' => '262',
			'identity_percentage' => '29.39',
			'species' => 'mrcc299',
			'common_name' => 'Micromonas sp RCC299',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ccr196000' => array(
			'gene_id' => 'ccr196000',
			'e_value' => '1e-15',
			'bit_score' => '81.6',
			'alignment_length' => '282',
			'identity_percentage' => '26.60',
			'species' => 'ccr',
			'common_name' => 'Chondrus crispus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OL16G00260' => array(
			'gene_id' => 'OL16G00260',
			'e_value' => '1e-15',
			'bit_score' => '79.7',
			'alignment_length' => '248',
			'identity_percentage' => '27.42',
			'species' => 'olu',
			'common_name' => 'Ostreococcus lucimarinus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CM11G01820' => array(
			'gene_id' => 'CM11G01820',
			'e_value' => '3e-15',
			'bit_score' => '80.5',
			'alignment_length' => '260',
			'identity_percentage' => '28.46',
			'species' => 'cme',
			'common_name' => 'Cyanidioschyzon merolae',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OT_17G02350' => array(
			'gene_id' => 'OT_17G02350',
			'e_value' => '3e-15',
			'bit_score' => '79.0',
			'alignment_length' => '234',
			'identity_percentage' => '27.78',
			'species' => 'ota',
			'common_name' => 'Ostreococcus tauri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'FC007G01990' => array(
			'gene_id' => 'FC007G01990',
			'e_value' => '4e-15',
			'bit_score' => '77.8',
			'alignment_length' => '188',
			'identity_percentage' => '32.45',
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'TP07G01290' => array(
			'gene_id' => 'TP07G01290',
			'e_value' => '6e-15',
			'bit_score' => '79.7',
			'alignment_length' => '234',
			'identity_percentage' => '29.91',
			'species' => 'tps',
			'common_name' => 'Thalassiosira pseudonana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'MP03G07990' => array(
			'gene_id' => 'MP03G07990',
			'e_value' => '1e-14',
			'bit_score' => '77.8',
			'alignment_length' => '251',
			'identity_percentage' => '28.69',
			'species' => 'mpu',
			'common_name' => 'Micromonas pusilla strain CCMP1545',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'MP12G02020' => array(
			'gene_id' => 'MP12G02020',
			'e_value' => '3e-14',
			'bit_score' => '77.8',
			'alignment_length' => '248',
			'identity_percentage' => '28.63',
			'species' => 'mpu',
			'common_name' => 'Micromonas pusilla strain CCMP1545',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'TP01G02830' => array(
			'gene_id' => 'TP01G02830',
			'e_value' => '1e-13',
			'bit_score' => '75.9',
			'alignment_length' => '286',
			'identity_percentage' => '28.32',
			'species' => 'tps',
			'common_name' => 'Thalassiosira pseudonana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ccr35300' => array(
			'gene_id' => 'ccr35300',
			'e_value' => '3e-13',
			'bit_score' => '73.6',
			'alignment_length' => '223',
			'identity_percentage' => '28.25',
			'species' => 'ccr',
			'common_name' => 'Chondrus crispus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'VC00G58980' => array(
			'gene_id' => 'VC00G58980',
			'e_value' => '3e-13',
			'bit_score' => '75.1',
			'alignment_length' => '237',
			'identity_percentage' => '27.00',
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'FC001G18500' => array(
			'gene_id' => 'FC001G18500',
			'e_value' => '3e-13',
			'bit_score' => '72.8',
			'alignment_length' => '257',
			'identity_percentage' => '29.18',
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'FC113G00030' => array(
			'gene_id' => 'FC113G00030',
			'e_value' => '6e-13',
			'bit_score' => '73.2',
			'alignment_length' => '264',
			'identity_percentage' => '27.65',
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OT_17G00250' => array(
			'gene_id' => 'OT_17G00250',
			'e_value' => '6e-13',
			'bit_score' => '73.9',
			'alignment_length' => '259',
			'identity_percentage' => '26.25',
			'species' => 'ota',
			'common_name' => 'Ostreococcus tauri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'emh407840' => array(
			'gene_id' => 'emh407840',
			'e_value' => '8e-13',
			'bit_score' => '72.0',
			'alignment_length' => '128',
			'identity_percentage' => '35.16',
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'emh619950' => array(
			'gene_id' => 'emh619950',
			'e_value' => '1e-12',
			'bit_score' => '70.5',
			'alignment_length' => '227',
			'identity_percentage' => '29.07',
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'emh123680' => array(
			'gene_id' => 'emh123680',
			'e_value' => '1e-12',
			'bit_score' => '70.5',
			'alignment_length' => '227',
			'identity_percentage' => '29.07',
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OL16G02410' => array(
			'gene_id' => 'OL16G02410',
			'e_value' => '1e-12',
			'bit_score' => '71.6',
			'alignment_length' => '234',
			'identity_percentage' => '26.07',
			'species' => 'olu',
			'common_name' => 'Ostreococcus lucimarinus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ORCC809_16G00280' => array(
			'gene_id' => 'ORCC809_16G00280',
			'e_value' => '2e-12',
			'bit_score' => '71.2',
			'alignment_length' => '236',
			'identity_percentage' => '27.54',
			'species' => 'orcc809',
			'common_name' => 'Ostreococcus sp RCC809',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ES0004G00400' => array(
			'gene_id' => 'ES0004G00400',
			'e_value' => '6e-12',
			'bit_score' => '70.9',
			'alignment_length' => '260',
			'identity_percentage' => '30.38',
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'FC031G01010' => array(
			'gene_id' => 'FC031G01010',
			'e_value' => '7e-12',
			'bit_score' => '71.6',
			'alignment_length' => '265',
			'identity_percentage' => '27.55',
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'MRCC299_01G01190' => array(
			'gene_id' => 'MRCC299_01G01190',
			'e_value' => '1e-11',
			'bit_score' => '69.3',
			'alignment_length' => '240',
			'identity_percentage' => '29.58',
			'species' => 'mrcc299',
			'common_name' => 'Micromonas sp RCC299',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AA0118G00040' => array(
			'gene_id' => 'AA0118G00040',
			'e_value' => '7e-11',
			'bit_score' => '66.2',
			'alignment_length' => '252',
			'identity_percentage' => '29.76',
			'species' => 'aan',
			'common_name' => 'Aureococcus anophagefferens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'emh571240' => array(
			'gene_id' => 'emh571240',
			'e_value' => '8e-11',
			'bit_score' => '65.1',
			'alignment_length' => '217',
			'identity_percentage' => '25.35',
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AA0003G03110' => array(
			'gene_id' => 'AA0003G03110',
			'e_value' => '8e-11',
			'bit_score' => '66.2',
			'alignment_length' => '252',
			'identity_percentage' => '29.76',
			'species' => 'aan',
			'common_name' => 'Aureococcus anophagefferens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'emh161120' => array(
			'gene_id' => 'emh161120',
			'e_value' => '1e-10',
			'bit_score' => '64.7',
			'alignment_length' => '208',
			'identity_percentage' => '25.96',
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'emh471710' => array(
			'gene_id' => 'emh471710',
			'e_value' => '1e-10',
			'bit_score' => '64.7',
			'alignment_length' => '215',
			'identity_percentage' => '25.12',
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PTI_16G02370' => array(
			'gene_id' => 'PTI_16G02370',
			'e_value' => '2e-10',
			'bit_score' => '65.9',
			'alignment_length' => '330',
			'identity_percentage' => '26.06',
			'species' => 'ptri',
			'common_name' => 'Phaeodactylum tricornutum',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'FC001G03480' => array(
			'gene_id' => 'FC001G03480',
			'e_value' => '8e-10',
			'bit_score' => '64.3',
			'alignment_length' => '268',
			'identity_percentage' => '29.85',
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OM_17G02630' => array(
			'gene_id' => 'OM_17G02630',
			'e_value' => '9e-10',
			'bit_score' => '63.2',
			'alignment_length' => '185',
			'identity_percentage' => '29.19',
			'species' => 'ome',
			'common_name' => 'Ostreococcus mediterraneus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'MP12G00880' => array(
			'gene_id' => 'MP12G00880',
			'e_value' => '1e-09',
			'bit_score' => '62.0',
			'alignment_length' => '188',
			'identity_percentage' => '26.60',
			'species' => 'mpu',
			'common_name' => 'Micromonas pusilla strain CCMP1545',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'FC005G03840' => array(
			'gene_id' => 'FC005G03840',
			'e_value' => '2e-09',
			'bit_score' => '62.4',
			'alignment_length' => '185',
			'identity_percentage' => '29.19',
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'BPRRCC1105_12G00130' => array(
			'gene_id' => 'BPRRCC1105_12G00130',
			'e_value' => '5e-09',
			'bit_score' => '61.2',
			'alignment_length' => '204',
			'identity_percentage' => '27.45',
			'species' => 'bprrcc1105',
			'common_name' => 'Bathycoccus prasinos',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'Naga_100056g17' => array(
			'gene_id' => 'Naga_100056g17',
			'e_value' => '5e-09',
			'bit_score' => '61.6',
			'alignment_length' => '283',
			'identity_percentage' => '28.62',
			'species' => 'nga',
			'common_name' => 'Nannochloropsis gaditana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'emh95350' => array(
			'gene_id' => 'emh95350',
			'e_value' => '1e-08',
			'bit_score' => '58.2',
			'alignment_length' => '164',
			'identity_percentage' => '26.22',
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'emh85510' => array(
			'gene_id' => 'emh85510',
			'e_value' => '1e-08',
			'bit_score' => '60.5',
			'alignment_length' => '254',
			'identity_percentage' => '26.77',
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CNC64A_011G01140' => array(
			'gene_id' => 'CNC64A_011G01140',
			'e_value' => '1e-08',
			'bit_score' => '56.2',
			'alignment_length' => '58',
			'identity_percentage' => '46.55',
			'species' => 'cnc64a',
			'common_name' => 'Chlorella sp NC64A',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PTI_13G01380' => array(
			'gene_id' => 'PTI_13G01380',
			'e_value' => '3e-08',
			'bit_score' => '58.9',
			'alignment_length' => '275',
			'identity_percentage' => '25.45',
			'species' => 'ptri',
			'common_name' => 'Phaeodactylum tricornutum',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CR07G02500' => array(
			'gene_id' => 'CR07G02500',
			'e_value' => '1e-06',
			'bit_score' => '54.7',
			'alignment_length' => '230',
			'identity_percentage' => '26.52',
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'gf' => array(
				[maximum depth reached]
			)
		)
	),
	'similarity_hits_species' => array(
		'ath' => array(
			(int) 0 => 'AT2G39140',
			(int) 1 => 'AT3G43340'
		),
		'atr' => array(
			(int) 0 => 'ATR_00161G00240'
		),
		'osa' => array(
			(int) 0 => 'OS03G05806'
		),
		'ppa' => array(
			(int) 0 => 'PP00075G00270'
		),
		'mrcc299' => array(
			(int) 0 => 'MRCC299_08G01570',
			(int) 1 => 'MRCC299_10G05220',
			(int) 2 => 'MRCC299_01G01190'
		),
		'ota' => array(
			(int) 0 => 'OT_06G04650',
			(int) 1 => 'OT_02G05090',
			(int) 2 => 'OT_17G02350',
			(int) 3 => 'OT_17G00250'
		),
		'cvu' => array(
			(int) 0 => 'CV00G42670'
		),
		'ome' => array(
			(int) 0 => 'OM_05G04760',
			(int) 1 => 'OM_04G03740',
			(int) 2 => 'OM_17G00310',
			(int) 3 => 'OM_17G02630'
		),
		'vca' => array(
			(int) 0 => 'VC00G99160',
			(int) 1 => 'VC00G58980'
		),
		'orcc809' => array(
			(int) 0 => 'ORCC809_07G00090',
			(int) 1 => 'ORCC809_02G00170',
			(int) 2 => 'ORCC809_16G02390',
			(int) 3 => 'ORCC809_16G00280'
		),
		'prcc4223' => array(
			(int) 0 => 'RCC4223.06g01030'
		),
		'pse3' => array(
			(int) 0 => 'PI00G64170'
		),
		'bprrcc1105' => array(
			(int) 0 => 'BPRRCC1105_05G04920',
			(int) 1 => 'BPRRCC1105_14G02080',
			(int) 2 => 'BPRRCC1105_12G00130'
		),
		'mpu' => array(
			(int) 0 => 'MP11G02340',
			(int) 1 => 'MP03G07990',
			(int) 2 => 'MP12G02020',
			(int) 3 => 'MP12G00880'
		),
		'acg' => array(
			(int) 0 => 'AC00G69930'
		),
		'apr' => array(
			(int) 0 => 'AP00G63980'
		),
		'cre' => array(
			(int) 0 => 'CR02G05760',
			(int) 1 => 'CR07G02500'
		),
		'olu' => array(
			(int) 0 => 'OL06G04530',
			(int) 1 => 'OL02G06050',
			(int) 2 => 'OL16G00260',
			(int) 3 => 'OL16G02410'
		),
		'hsp' => array(
			(int) 0 => 'HE0000G59460'
		),
		'gsu' => array(
			(int) 0 => 'gsu36410'
		),
		'esi' => array(
			(int) 0 => 'ES0187G00170',
			(int) 1 => 'ES0012G00560',
			(int) 2 => 'ES0004G00400'
		),
		'phs' => array(
			(int) 0 => 'phs50290',
			(int) 1 => 'phs342110'
		),
		'ddi' => array(
			(int) 0 => 'DDB_G0276449',
			(int) 1 => 'DDB_G0282961'
		),
		'pte' => array(
			(int) 0 => 'pte573810',
			(int) 1 => 'pte30170'
		),
		'ptri' => array(
			(int) 0 => 'PTI_04G00780',
			(int) 1 => 'PTI_10G03360',
			(int) 2 => 'PTI_16G02370',
			(int) 3 => 'PTI_13G01380'
		),
		'ccr' => array(
			(int) 0 => 'ccr196000',
			(int) 1 => 'ccr35300'
		),
		'cme' => array(
			(int) 0 => 'CM11G01820'
		),
		'fcy' => array(
			(int) 0 => 'FC007G01990',
			(int) 1 => 'FC001G18500',
			(int) 2 => 'FC113G00030',
			(int) 3 => 'FC031G01010',
			(int) 4 => 'FC001G03480',
			(int) 5 => 'FC005G03840'
		),
		'tps' => array(
			(int) 0 => 'TP07G01290',
			(int) 1 => 'TP01G02830'
		),
		'emh' => array(
			(int) 0 => 'emh407840',
			(int) 1 => 'emh619950',
			(int) 2 => 'emh123680',
			(int) 3 => 'emh571240',
			(int) 4 => 'emh161120',
			(int) 5 => 'emh471710',
			(int) 6 => 'emh95350',
			(int) 7 => 'emh85510'
		),
		'aan' => array(
			(int) 0 => 'AA0118G00040',
			(int) 1 => 'AA0003G03110'
		),
		'nga' => array(
			(int) 0 => 'Naga_100056g17'
		),
		'cnc64a' => array(
			(int) 0 => 'CNC64A_011G01140'
		)
	),
	'gene_id' => 'AT2G39140',
	'all_species_index' => array(
		(int) 0 => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333'
		),
		(int) 1 => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702'
		),
		(int) 2 => array(
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'tax_id' => '763042'
		),
		(int) 3 => array(
			'species' => 'aan',
			'common_name' => 'Aureococcus anophagefferens',
			'tax_id' => '44056'
		),
		(int) 4 => array(
			'species' => 'apr',
			'common_name' => 'Auxenochlorella protothecoides',
			'tax_id' => '3075'
		),
		(int) 5 => array(
			'species' => 'bprrcc1105',
			'common_name' => 'Bathycoccus prasinos',
			'tax_id' => '41875'
		),
		(int) 6 => array(
			'species' => 'cel',
			'common_name' => 'Caenorhabditis elegans',
			'tax_id' => '6239'
		),
		(int) 7 => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055'
		),
		(int) 8 => array(
			'species' => 'cnc64a',
			'common_name' => 'Chlorella sp NC64A',
			'tax_id' => '310507'
		),
		(int) 9 => array(
			'species' => 'ccr',
			'common_name' => 'Chondrus crispus',
			'tax_id' => '2769'
		),
		(int) 10 => array(
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'tax_id' => '574566'
		),
		(int) 11 => array(
			'species' => 'cme',
			'common_name' => 'Cyanidioschyzon merolae',
			'tax_id' => '45157'
		),
		(int) 12 => array(
			'species' => 'ddi',
			'common_name' => 'Dictyostelium discoideum',
			'tax_id' => '44689'
		),
		(int) 13 => array(
			'species' => 'drm',
			'common_name' => 'Drosophila melanogaster',
			'tax_id' => '7227'
		),
		(int) 14 => array(
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'tax_id' => '2880'
		),
		(int) 15 => array(
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'tax_id' => '280463'
		),
		(int) 16 => array(
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'tax_id' => '186039'
		),
		(int) 17 => array(
			'species' => 'gsu',
			'common_name' => 'Galdieria sulphuraria',
			'tax_id' => '130081'
		),
		(int) 18 => array(
			'species' => 'hsp',
			'common_name' => 'Helicosporidium sp. ',
			'tax_id' => '145475'
		),
		(int) 19 => array(
			'species' => 'hom',
			'common_name' => 'Homo sapiens',
			'tax_id' => '9606'
		),
		(int) 20 => array(
			'species' => 'mpu',
			'common_name' => 'Micromonas pusilla strain CCMP1545',
			'tax_id' => '564608'
		),
		(int) 21 => array(
			'species' => 'mrcc299',
			'common_name' => 'Micromonas sp RCC299',
			'tax_id' => '296587'
		),
		(int) 22 => array(
			'species' => 'mus',
			'common_name' => 'Mus musculus',
			'tax_id' => '10090'
		),
		(int) 23 => array(
			'species' => 'nga',
			'common_name' => 'Nannochloropsis gaditana',
			'tax_id' => '72520'
		),
		(int) 24 => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'tax_id' => '4530'
		),
		(int) 25 => array(
			'species' => 'olu',
			'common_name' => 'Ostreococcus lucimarinus',
			'tax_id' => '242159'
		),
		(int) 26 => array(
			'species' => 'ome',
			'common_name' => 'Ostreococcus mediterraneus',
			'tax_id' => '1486918'
		),
		(int) 27 => array(
			'species' => 'orcc809',
			'common_name' => 'Ostreococcus sp RCC809',
			'tax_id' => '385169'
		),
		(int) 28 => array(
			'species' => 'ota',
			'common_name' => 'Ostreococcus tauri',
			'tax_id' => '70448'
		),
		(int) 29 => array(
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'tax_id' => '5888'
		),
		(int) 30 => array(
			'species' => 'ptri',
			'common_name' => 'Phaeodactylum tricornutum',
			'tax_id' => '2850'
		),
		(int) 31 => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'tax_id' => '3218'
		),
		(int) 32 => array(
			'species' => 'phs',
			'common_name' => 'Phytophtora sojae',
			'tax_id' => '67593'
		),
		(int) 33 => array(
			'species' => 'pse3',
			'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
			'tax_id' => '1470871'
		),
		(int) 34 => array(
			'species' => 'prcc4223',
			'common_name' => 'Picochlorum_RCC4223',
			'tax_id' => '249344'
		),
		(int) 35 => array(
			'species' => 'sac',
			'common_name' => 'Saccharomyces cerevisiae strain S288C',
			'tax_id' => '4932'
		),
		(int) 36 => array(
			'species' => 'scp',
			'common_name' => 'Schizosaccharomyces pombe',
			'tax_id' => '4896'
		),
		(int) 37 => array(
			'species' => 'tps',
			'common_name' => 'Thalassiosira pseudonana',
			'tax_id' => '35128'
		),
		(int) 38 => array(
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'tax_id' => '3067'
		)
	),
	'all_species' => array(
		'atr' => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333'
		),
		'ath' => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702'
		),
		'acg' => array(
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'tax_id' => '763042'
		),
		'aan' => array(
			'species' => 'aan',
			'common_name' => 'Aureococcus anophagefferens',
			'tax_id' => '44056'
		),
		'apr' => array(
			'species' => 'apr',
			'common_name' => 'Auxenochlorella protothecoides',
			'tax_id' => '3075'
		),
		'bprrcc1105' => array(
			'species' => 'bprrcc1105',
			'common_name' => 'Bathycoccus prasinos',
			'tax_id' => '41875'
		),
		'cel' => array(
			'species' => 'cel',
			'common_name' => 'Caenorhabditis elegans',
			'tax_id' => '6239'
		),
		'cre' => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055'
		),
		'cnc64a' => array(
			'species' => 'cnc64a',
			'common_name' => 'Chlorella sp NC64A',
			'tax_id' => '310507'
		),
		'ccr' => array(
			'species' => 'ccr',
			'common_name' => 'Chondrus crispus',
			'tax_id' => '2769'
		),
		'cvu' => array(
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'tax_id' => '574566'
		),
		'cme' => array(
			'species' => 'cme',
			'common_name' => 'Cyanidioschyzon merolae',
			'tax_id' => '45157'
		),
		'ddi' => array(
			'species' => 'ddi',
			'common_name' => 'Dictyostelium discoideum',
			'tax_id' => '44689'
		),
		'drm' => array(
			'species' => 'drm',
			'common_name' => 'Drosophila melanogaster',
			'tax_id' => '7227'
		),
		'esi' => array(
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'tax_id' => '2880'
		),
		'emh' => array(
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'tax_id' => '280463'
		),
		'fcy' => array(
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'tax_id' => '186039'
		),
		'gsu' => array(
			'species' => 'gsu',
			'common_name' => 'Galdieria sulphuraria',
			'tax_id' => '130081'
		),
		'hsp' => array(
			'species' => 'hsp',
			'common_name' => 'Helicosporidium sp. ',
			'tax_id' => '145475'
		),
		'hom' => array(
			'species' => 'hom',
			'common_name' => 'Homo sapiens',
			'tax_id' => '9606'
		),
		'mpu' => array(
			'species' => 'mpu',
			'common_name' => 'Micromonas pusilla strain CCMP1545',
			'tax_id' => '564608'
		),
		'mrcc299' => array(
			'species' => 'mrcc299',
			'common_name' => 'Micromonas sp RCC299',
			'tax_id' => '296587'
		),
		'mus' => array(
			'species' => 'mus',
			'common_name' => 'Mus musculus',
			'tax_id' => '10090'
		),
		'nga' => array(
			'species' => 'nga',
			'common_name' => 'Nannochloropsis gaditana',
			'tax_id' => '72520'
		),
		'osa' => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'tax_id' => '4530'
		),
		'olu' => array(
			'species' => 'olu',
			'common_name' => 'Ostreococcus lucimarinus',
			'tax_id' => '242159'
		),
		'ome' => array(
			'species' => 'ome',
			'common_name' => 'Ostreococcus mediterraneus',
			'tax_id' => '1486918'
		),
		'orcc809' => array(
			'species' => 'orcc809',
			'common_name' => 'Ostreococcus sp RCC809',
			'tax_id' => '385169'
		),
		'ota' => array(
			'species' => 'ota',
			'common_name' => 'Ostreococcus tauri',
			'tax_id' => '70448'
		),
		'pte' => array(
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'tax_id' => '5888'
		),
		'ptri' => array(
			'species' => 'ptri',
			'common_name' => 'Phaeodactylum tricornutum',
			'tax_id' => '2850'
		),
		'ppa' => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'tax_id' => '3218'
		),
		'phs' => array(
			'species' => 'phs',
			'common_name' => 'Phytophtora sojae',
			'tax_id' => '67593'
		),
		'pse3' => array(
			'species' => 'pse3',
			'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
			'tax_id' => '1470871'
		),
		'prcc4223' => array(
			'species' => 'prcc4223',
			'common_name' => 'Picochlorum_RCC4223',
			'tax_id' => '249344'
		),
		'sac' => array(
			'species' => 'sac',
			'common_name' => 'Saccharomyces cerevisiae strain S288C',
			'tax_id' => '4932'
		),
		'scp' => array(
			'species' => 'scp',
			'common_name' => 'Schizosaccharomyces pombe',
			'tax_id' => '4896'
		),
		'tps' => array(
			'species' => 'tps',
			'common_name' => 'Thalassiosira pseudonana',
			'tax_id' => '35128'
		),
		'vca' => array(
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'tax_id' => '3067'
		)
	),
	'gene_family_types_information' => array(
		'HOMFAM' => array(
			'id' => 'HOMFAM',
			'name' => 'Homologous gene family',
			'prefix' => 'HOM',
			'gene_type' => 'coding',
			'method' => '{}',
			'ancestry' => 'homology',
			'parent_id' => ''
		),
		'ORTHOFAM' => array(
			'id' => 'ORTHOFAM',
			'name' => 'Orthologous gene family',
			'prefix' => 'ORTH',
			'gene_type' => 'coding',
			'method' => '{}',
			'ancestry' => 'orthology',
			'parent_id' => 'HOMFAM'
		)
	),
	'gene_family_types_configuration' => array(),
	'data_identifier' => 'AT2G39140',
	'data_type' => 'gene_id',
	'allow_async_use' => true,
	'gene_placeholder' => 'RCC4223.05g04500',
	'gf_placeholder' => 'HOM03P011649',
	'title_for_layout' => 'Pico-PLAZA 3.0 : Interactive Phylogenetics Module'
)
$allowed_extra_sequences_types = array(
	'aa' => 'Protein',
	'dna' => 'DNA'
)
$allowed_editing_methods = array(
	'column' => 'Positions only',
	'row' => 'Genes only',
	'column_row' => 'Positions and Genes',
	'none' => 'No editing'
)
$allowed_tree_programs = array(
	'fasttree' => 'FastTree',
	'iqtree' => 'IQ-TREE (includes model testing)',
	'raxml' => 'RAxML',
	'phyml' => 'PhyML'
)
$allowed_msa_programs = array(
	'muscle' => 'MUSCLE',
	'mafft' => 'MAFFT'
)
$allowed_number_blasthits = array(
	(int) 0 => 'all',
	(int) 1 => (int) 20,
	(int) 2 => (int) 10,
	(int) 3 => (int) 5,
	(int) 4 => (int) 1
)
$similarity_hits_genes = array(
	'AT2G39140' => array(
		'gene_id' => 'AT2G39140',
		'e_value' => '0.0',
		'bit_score' => '838',
		'alignment_length' => '411',
		'identity_percentage' => '100.00',
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P003650'
		)
	),
	'ATR_00161G00240' => array(
		'gene_id' => 'ATR_00161G00240',
		'e_value' => '6e-141',
		'bit_score' => '415',
		'alignment_length' => '339',
		'identity_percentage' => '64.01',
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P003650'
		)
	),
	'OS03G05806' => array(
		'gene_id' => 'OS03G05806',
		'e_value' => '9e-128',
		'bit_score' => '382',
		'alignment_length' => '359',
		'identity_percentage' => '56.82',
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P003650'
		)
	),
	'PP00075G00270' => array(
		'gene_id' => 'PP00075G00270',
		'e_value' => '3e-109',
		'bit_score' => '333',
		'alignment_length' => '296',
		'identity_percentage' => '57.09',
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P003650'
		)
	),
	'MRCC299_08G01570' => array(
		'gene_id' => 'MRCC299_08G01570',
		'e_value' => '2e-69',
		'bit_score' => '226',
		'alignment_length' => '257',
		'identity_percentage' => '47.08',
		'species' => 'mrcc299',
		'common_name' => 'Micromonas sp RCC299',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P003650'
		)
	),
	'OT_06G04650' => array(
		'gene_id' => 'OT_06G04650',
		'e_value' => '9e-65',
		'bit_score' => '219',
		'alignment_length' => '247',
		'identity_percentage' => '44.94',
		'species' => 'ota',
		'common_name' => 'Ostreococcus tauri',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P003650'
		)
	),
	'CV00G42670' => array(
		'gene_id' => 'CV00G42670',
		'e_value' => '2e-64',
		'bit_score' => '214',
		'alignment_length' => '251',
		'identity_percentage' => '46.61',
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P003650'
		)
	),
	'OM_05G04760' => array(
		'gene_id' => 'OM_05G04760',
		'e_value' => '5e-61',
		'bit_score' => '209',
		'alignment_length' => '271',
		'identity_percentage' => '41.70',
		'species' => 'ome',
		'common_name' => 'Ostreococcus mediterraneus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P003650'
		)
	),
	'VC00G99160' => array(
		'gene_id' => 'VC00G99160',
		'e_value' => '3e-60',
		'bit_score' => '206',
		'alignment_length' => '256',
		'identity_percentage' => '47.27',
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P003650'
		)
	),
	'ORCC809_07G00090' => array(
		'gene_id' => 'ORCC809_07G00090',
		'e_value' => '4e-60',
		'bit_score' => '201',
		'alignment_length' => '231',
		'identity_percentage' => '44.59',
		'species' => 'orcc809',
		'common_name' => 'Ostreococcus sp RCC809',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P003650'
		)
	),
	'RCC4223.06g01030' => array(
		'gene_id' => 'RCC4223.06g01030',
		'e_value' => '3e-58',
		'bit_score' => '200',
		'alignment_length' => '254',
		'identity_percentage' => '44.09',
		'species' => 'prcc4223',
		'common_name' => 'Picochlorum_RCC4223',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P003650'
		)
	),
	'PI00G64170' => array(
		'gene_id' => 'PI00G64170',
		'e_value' => '4e-58',
		'bit_score' => '199',
		'alignment_length' => '254',
		'identity_percentage' => '44.49',
		'species' => 'pse3',
		'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P003650'
		)
	),
	'BPRRCC1105_05G04920' => array(
		'gene_id' => 'BPRRCC1105_05G04920',
		'e_value' => '2e-57',
		'bit_score' => '199',
		'alignment_length' => '267',
		'identity_percentage' => '41.95',
		'species' => 'bprrcc1105',
		'common_name' => 'Bathycoccus prasinos',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P003650'
		)
	),
	'MP11G02340' => array(
		'gene_id' => 'MP11G02340',
		'e_value' => '7e-55',
		'bit_score' => '192',
		'alignment_length' => '276',
		'identity_percentage' => '42.39',
		'species' => 'mpu',
		'common_name' => 'Micromonas pusilla strain CCMP1545',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P003650'
		)
	),
	'AC00G69930' => array(
		'gene_id' => 'AC00G69930',
		'e_value' => '9e-54',
		'bit_score' => '186',
		'alignment_length' => '251',
		'identity_percentage' => '46.22',
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P003650'
		)
	),
	'AP00G63980' => array(
		'gene_id' => 'AP00G63980',
		'e_value' => '4e-51',
		'bit_score' => '180',
		'alignment_length' => '266',
		'identity_percentage' => '42.86',
		'species' => 'apr',
		'common_name' => 'Auxenochlorella protothecoides',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P003650'
		)
	),
	'CR02G05760' => array(
		'gene_id' => 'CR02G05760',
		'e_value' => '3e-49',
		'bit_score' => '179',
		'alignment_length' => '188',
		'identity_percentage' => '50.53',
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P003650'
		)
	),
	'OL06G04530' => array(
		'gene_id' => 'OL06G04530',
		'e_value' => '3e-48',
		'bit_score' => '170',
		'alignment_length' => '231',
		'identity_percentage' => '43.72',
		'species' => 'olu',
		'common_name' => 'Ostreococcus lucimarinus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P003650'
		)
	),
	'AT3G43340' => array(
		'gene_id' => 'AT3G43340',
		'e_value' => '3e-40',
		'bit_score' => '144',
		'alignment_length' => '74',
		'identity_percentage' => '91.89',
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P119958'
		)
	),
	'CNC64A_135G00010' => array(
		'gene_id' => 'CNC64A_135G00010',
		'e_value' => '8e-39',
		'bit_score' => '143',
		'alignment_length' => '180',
		'identity_percentage' => '44.44',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P003650'
		)
	),
	'HE0000G59460' => array(
		'gene_id' => 'HE0000G59460',
		'e_value' => '5e-34',
		'bit_score' => '130',
		'alignment_length' => '203',
		'identity_percentage' => '38.92',
		'species' => 'hsp',
		'common_name' => 'Helicosporidium sp. ',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P003650'
		)
	),
	'gsu36410' => array(
		'gene_id' => 'gsu36410',
		'e_value' => '9e-32',
		'bit_score' => '127',
		'alignment_length' => '252',
		'identity_percentage' => '32.94',
		'species' => 'gsu',
		'common_name' => 'Galdieria sulphuraria',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P003650'
		)
	),
	'ES0187G00170' => array(
		'gene_id' => 'ES0187G00170',
		'e_value' => '1e-28',
		'bit_score' => '120',
		'alignment_length' => '252',
		'identity_percentage' => '32.54',
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P003650'
		)
	),
	'phs50290' => array(
		'gene_id' => 'phs50290',
		'e_value' => '7e-27',
		'bit_score' => '113',
		'alignment_length' => '244',
		'identity_percentage' => '33.20',
		'species' => 'phs',
		'common_name' => 'Phytophtora sojae',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P003694'
		)
	),
	'DDB_G0276449' => array(
		'gene_id' => 'DDB_G0276449',
		'e_value' => '5e-25',
		'bit_score' => '108',
		'alignment_length' => '255',
		'identity_percentage' => '32.16',
		'species' => 'ddi',
		'common_name' => 'Dictyostelium discoideum',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P003694'
		)
	),
	'OT_02G05090' => array(
		'gene_id' => 'OT_02G05090',
		'e_value' => '2e-23',
		'bit_score' => '103',
		'alignment_length' => '261',
		'identity_percentage' => '29.89',
		'species' => 'ota',
		'common_name' => 'Ostreococcus tauri',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P007202'
		)
	),
	'phs342110' => array(
		'gene_id' => 'phs342110',
		'e_value' => '2e-23',
		'bit_score' => '102',
		'alignment_length' => '237',
		'identity_percentage' => '32.91',
		'species' => 'phs',
		'common_name' => 'Phytophtora sojae',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P007202'
		)
	),
	'pte573810' => array(
		'gene_id' => 'pte573810',
		'e_value' => '7e-23',
		'bit_score' => '102',
		'alignment_length' => '264',
		'identity_percentage' => '29.92',
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P003694'
		)
	),
	'pte30170' => array(
		'gene_id' => 'pte30170',
		'e_value' => '1e-22',
		'bit_score' => '101',
		'alignment_length' => '263',
		'identity_percentage' => '30.80',
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P003694'
		)
	),
	'ORCC809_02G00170' => array(
		'gene_id' => 'ORCC809_02G00170',
		'e_value' => '7e-22',
		'bit_score' => '98.2',
		'alignment_length' => '263',
		'identity_percentage' => '29.28',
		'species' => 'orcc809',
		'common_name' => 'Ostreococcus sp RCC809',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P007202'
		)
	),
	'OM_04G03740' => array(
		'gene_id' => 'OM_04G03740',
		'e_value' => '4e-21',
		'bit_score' => '97.1',
		'alignment_length' => '278',
		'identity_percentage' => '27.34',
		'species' => 'ome',
		'common_name' => 'Ostreococcus mediterraneus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P007202'
		)
	),
	'ES0012G00560' => array(
		'gene_id' => 'ES0012G00560',
		'e_value' => '3e-20',
		'bit_score' => '96.3',
		'alignment_length' => '249',
		'identity_percentage' => '32.13',
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P003694'
		)
	),
	'OM_17G00310' => array(
		'gene_id' => 'OM_17G00310',
		'e_value' => '4e-20',
		'bit_score' => '95.1',
		'alignment_length' => '263',
		'identity_percentage' => '29.28',
		'species' => 'ome',
		'common_name' => 'Ostreococcus mediterraneus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P007764'
		)
	),
	'OL02G06050' => array(
		'gene_id' => 'OL02G06050',
		'e_value' => '8e-20',
		'bit_score' => '92.0',
		'alignment_length' => '237',
		'identity_percentage' => '31.22',
		'species' => 'olu',
		'common_name' => 'Ostreococcus lucimarinus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P007202'
		)
	),
	'BPRRCC1105_14G02080' => array(
		'gene_id' => 'BPRRCC1105_14G02080',
		'e_value' => '1e-19',
		'bit_score' => '91.7',
		'alignment_length' => '221',
		'identity_percentage' => '34.39',
		'species' => 'bprrcc1105',
		'common_name' => 'Bathycoccus prasinos',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P007202'
		)
	),
	'ORCC809_16G02390' => array(
		'gene_id' => 'ORCC809_16G02390',
		'e_value' => '3e-18',
		'bit_score' => '87.8',
		'alignment_length' => '237',
		'identity_percentage' => '30.80',
		'species' => 'orcc809',
		'common_name' => 'Ostreococcus sp RCC809',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P007764'
		)
	),
	'PTI_04G00780' => array(
		'gene_id' => 'PTI_04G00780',
		'e_value' => '9e-18',
		'bit_score' => '86.7',
		'alignment_length' => '242',
		'identity_percentage' => '31.40',
		'species' => 'ptri',
		'common_name' => 'Phaeodactylum tricornutum',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P007202'
		)
	),
	'PTI_10G03360' => array(
		'gene_id' => 'PTI_10G03360',
		'e_value' => '2e-17',
		'bit_score' => '87.0',
		'alignment_length' => '269',
		'identity_percentage' => '30.48',
		'species' => 'ptri',
		'common_name' => 'Phaeodactylum tricornutum',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P003694'
		)
	),
	'DDB_G0282961' => array(
		'gene_id' => 'DDB_G0282961',
		'e_value' => '3e-16',
		'bit_score' => '84.7',
		'alignment_length' => '253',
		'identity_percentage' => '28.85',
		'species' => 'ddi',
		'common_name' => 'Dictyostelium discoideum',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P009635'
		)
	),
	'MRCC299_10G05220' => array(
		'gene_id' => 'MRCC299_10G05220',
		'e_value' => '3e-16',
		'bit_score' => '81.6',
		'alignment_length' => '262',
		'identity_percentage' => '29.39',
		'species' => 'mrcc299',
		'common_name' => 'Micromonas sp RCC299',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P007764'
		)
	),
	'ccr196000' => array(
		'gene_id' => 'ccr196000',
		'e_value' => '1e-15',
		'bit_score' => '81.6',
		'alignment_length' => '282',
		'identity_percentage' => '26.60',
		'species' => 'ccr',
		'common_name' => 'Chondrus crispus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P003650'
		)
	),
	'OL16G00260' => array(
		'gene_id' => 'OL16G00260',
		'e_value' => '1e-15',
		'bit_score' => '79.7',
		'alignment_length' => '248',
		'identity_percentage' => '27.42',
		'species' => 'olu',
		'common_name' => 'Ostreococcus lucimarinus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P007764'
		)
	),
	'CM11G01820' => array(
		'gene_id' => 'CM11G01820',
		'e_value' => '3e-15',
		'bit_score' => '80.5',
		'alignment_length' => '260',
		'identity_percentage' => '28.46',
		'species' => 'cme',
		'common_name' => 'Cyanidioschyzon merolae',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P007764'
		)
	),
	'OT_17G02350' => array(
		'gene_id' => 'OT_17G02350',
		'e_value' => '3e-15',
		'bit_score' => '79.0',
		'alignment_length' => '234',
		'identity_percentage' => '27.78',
		'species' => 'ota',
		'common_name' => 'Ostreococcus tauri',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P009635'
		)
	),
	'FC007G01990' => array(
		'gene_id' => 'FC007G01990',
		'e_value' => '4e-15',
		'bit_score' => '77.8',
		'alignment_length' => '188',
		'identity_percentage' => '32.45',
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P010423'
		)
	),
	'TP07G01290' => array(
		'gene_id' => 'TP07G01290',
		'e_value' => '6e-15',
		'bit_score' => '79.7',
		'alignment_length' => '234',
		'identity_percentage' => '29.91',
		'species' => 'tps',
		'common_name' => 'Thalassiosira pseudonana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P003694'
		)
	),
	'MP03G07990' => array(
		'gene_id' => 'MP03G07990',
		'e_value' => '1e-14',
		'bit_score' => '77.8',
		'alignment_length' => '251',
		'identity_percentage' => '28.69',
		'species' => 'mpu',
		'common_name' => 'Micromonas pusilla strain CCMP1545',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P009635'
		)
	),
	'MP12G02020' => array(
		'gene_id' => 'MP12G02020',
		'e_value' => '3e-14',
		'bit_score' => '77.8',
		'alignment_length' => '248',
		'identity_percentage' => '28.63',
		'species' => 'mpu',
		'common_name' => 'Micromonas pusilla strain CCMP1545',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P007202'
		)
	),
	'TP01G02830' => array(
		'gene_id' => 'TP01G02830',
		'e_value' => '1e-13',
		'bit_score' => '75.9',
		'alignment_length' => '286',
		'identity_percentage' => '28.32',
		'species' => 'tps',
		'common_name' => 'Thalassiosira pseudonana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P010423'
		)
	),
	'ccr35300' => array(
		'gene_id' => 'ccr35300',
		'e_value' => '3e-13',
		'bit_score' => '73.6',
		'alignment_length' => '223',
		'identity_percentage' => '28.25',
		'species' => 'ccr',
		'common_name' => 'Chondrus crispus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P010423'
		)
	),
	'VC00G58980' => array(
		'gene_id' => 'VC00G58980',
		'e_value' => '3e-13',
		'bit_score' => '75.1',
		'alignment_length' => '237',
		'identity_percentage' => '27.00',
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P009635'
		)
	),
	'FC001G18500' => array(
		'gene_id' => 'FC001G18500',
		'e_value' => '3e-13',
		'bit_score' => '72.8',
		'alignment_length' => '257',
		'identity_percentage' => '29.18',
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P019536'
		)
	),
	'FC113G00030' => array(
		'gene_id' => 'FC113G00030',
		'e_value' => '6e-13',
		'bit_score' => '73.2',
		'alignment_length' => '264',
		'identity_percentage' => '27.65',
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'gf' => array(
			'HOMFAM' => 'HOM03P004871',
			'ORTHOFAM' => 'ORTHO03P003694'
		)
	),
	'OT_17G00250' => array(
		'gene_id' => 'OT_17G00250',
		'e_value' => '6e-13',
		'bit_score' => '73.9',
		'alignment_length' => '259',
		'identity_percentage' => '26.25',
		'species' => 'ota',
		'common_name' => 'Ostreococcus tauri',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P007764'
		)
	),
	'emh407840' => array(
		'gene_id' => 'emh407840',
		'e_value' => '8e-13',
		'bit_score' => '72.0',
		'alignment_length' => '128',
		'identity_percentage' => '35.16',
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'gf' => array(
			'HOMFAM' => 'HOM03P033232',
			'ORTHOFAM' => 'ORTHO03P043977'
		)
	),
	'emh619950' => array(
		'gene_id' => 'emh619950',
		'e_value' => '1e-12',
		'bit_score' => '70.5',
		'alignment_length' => '227',
		'identity_percentage' => '29.07',
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P010423'
		)
	),
	'emh123680' => array(
		'gene_id' => 'emh123680',
		'e_value' => '1e-12',
		'bit_score' => '70.5',
		'alignment_length' => '227',
		'identity_percentage' => '29.07',
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P010423'
		)
	),
	'OL16G02410' => array(
		'gene_id' => 'OL16G02410',
		'e_value' => '1e-12',
		'bit_score' => '71.6',
		'alignment_length' => '234',
		'identity_percentage' => '26.07',
		'species' => 'olu',
		'common_name' => 'Ostreococcus lucimarinus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P009635'
		)
	),
	'ORCC809_16G00280' => array(
		'gene_id' => 'ORCC809_16G00280',
		'e_value' => '2e-12',
		'bit_score' => '71.2',
		'alignment_length' => '236',
		'identity_percentage' => '27.54',
		'species' => 'orcc809',
		'common_name' => 'Ostreococcus sp RCC809',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P009635'
		)
	),
	'ES0004G00400' => array(
		'gene_id' => 'ES0004G00400',
		'e_value' => '6e-12',
		'bit_score' => '70.9',
		'alignment_length' => '260',
		'identity_percentage' => '30.38',
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P010423'
		)
	),
	'FC031G01010' => array(
		'gene_id' => 'FC031G01010',
		'e_value' => '7e-12',
		'bit_score' => '71.6',
		'alignment_length' => '265',
		'identity_percentage' => '27.55',
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'gf' => array(
			'HOMFAM' => 'HOM03P004871',
			'ORTHOFAM' => 'ORTHO03P003694'
		)
	),
	'MRCC299_01G01190' => array(
		'gene_id' => 'MRCC299_01G01190',
		'e_value' => '1e-11',
		'bit_score' => '69.3',
		'alignment_length' => '240',
		'identity_percentage' => '29.58',
		'species' => 'mrcc299',
		'common_name' => 'Micromonas sp RCC299',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P007202'
		)
	),
	'AA0118G00040' => array(
		'gene_id' => 'AA0118G00040',
		'e_value' => '7e-11',
		'bit_score' => '66.2',
		'alignment_length' => '252',
		'identity_percentage' => '29.76',
		'species' => 'aan',
		'common_name' => 'Aureococcus anophagefferens',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P007764'
		)
	),
	'emh571240' => array(
		'gene_id' => 'emh571240',
		'e_value' => '8e-11',
		'bit_score' => '65.1',
		'alignment_length' => '217',
		'identity_percentage' => '25.35',
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P019536'
		)
	),
	'AA0003G03110' => array(
		'gene_id' => 'AA0003G03110',
		'e_value' => '8e-11',
		'bit_score' => '66.2',
		'alignment_length' => '252',
		'identity_percentage' => '29.76',
		'species' => 'aan',
		'common_name' => 'Aureococcus anophagefferens',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P007764'
		)
	),
	'emh161120' => array(
		'gene_id' => 'emh161120',
		'e_value' => '1e-10',
		'bit_score' => '64.7',
		'alignment_length' => '208',
		'identity_percentage' => '25.96',
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'gf' => array(
			'HOMFAM' => 'HOM03P033231',
			'ORTHOFAM' => 'ORTHO03P052225'
		)
	),
	'emh471710' => array(
		'gene_id' => 'emh471710',
		'e_value' => '1e-10',
		'bit_score' => '64.7',
		'alignment_length' => '215',
		'identity_percentage' => '25.12',
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'gf' => array(
			'HOMFAM' => 'HOM03P033231',
			'ORTHOFAM' => 'ORTHO03P052225'
		)
	),
	'PTI_16G02370' => array(
		'gene_id' => 'PTI_16G02370',
		'e_value' => '2e-10',
		'bit_score' => '65.9',
		'alignment_length' => '330',
		'identity_percentage' => '26.06',
		'species' => 'ptri',
		'common_name' => 'Phaeodactylum tricornutum',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P010423'
		)
	),
	'FC001G03480' => array(
		'gene_id' => 'FC001G03480',
		'e_value' => '8e-10',
		'bit_score' => '64.3',
		'alignment_length' => '268',
		'identity_percentage' => '29.85',
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P007202'
		)
	),
	'OM_17G02630' => array(
		'gene_id' => 'OM_17G02630',
		'e_value' => '9e-10',
		'bit_score' => '63.2',
		'alignment_length' => '185',
		'identity_percentage' => '29.19',
		'species' => 'ome',
		'common_name' => 'Ostreococcus mediterraneus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P009635'
		)
	),
	'MP12G00880' => array(
		'gene_id' => 'MP12G00880',
		'e_value' => '1e-09',
		'bit_score' => '62.0',
		'alignment_length' => '188',
		'identity_percentage' => '26.60',
		'species' => 'mpu',
		'common_name' => 'Micromonas pusilla strain CCMP1545',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P019536'
		)
	),
	'FC005G03840' => array(
		'gene_id' => 'FC005G03840',
		'e_value' => '2e-09',
		'bit_score' => '62.4',
		'alignment_length' => '185',
		'identity_percentage' => '29.19',
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P007764'
		)
	),
	'BPRRCC1105_12G00130' => array(
		'gene_id' => 'BPRRCC1105_12G00130',
		'e_value' => '5e-09',
		'bit_score' => '61.2',
		'alignment_length' => '204',
		'identity_percentage' => '27.45',
		'species' => 'bprrcc1105',
		'common_name' => 'Bathycoccus prasinos',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P009635'
		)
	),
	'Naga_100056g17' => array(
		'gene_id' => 'Naga_100056g17',
		'e_value' => '5e-09',
		'bit_score' => '61.6',
		'alignment_length' => '283',
		'identity_percentage' => '28.62',
		'species' => 'nga',
		'common_name' => 'Nannochloropsis gaditana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P010423'
		)
	),
	'emh95350' => array(
		'gene_id' => 'emh95350',
		'e_value' => '1e-08',
		'bit_score' => '58.2',
		'alignment_length' => '164',
		'identity_percentage' => '26.22',
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P019536'
		)
	),
	'emh85510' => array(
		'gene_id' => 'emh85510',
		'e_value' => '1e-08',
		'bit_score' => '60.5',
		'alignment_length' => '254',
		'identity_percentage' => '26.77',
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P007202'
		)
	),
	'CNC64A_011G01140' => array(
		'gene_id' => 'CNC64A_011G01140',
		'e_value' => '1e-08',
		'bit_score' => '56.2',
		'alignment_length' => '58',
		'identity_percentage' => '46.55',
		'species' => 'cnc64a',
		'common_name' => 'Chlorella sp NC64A',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P082200'
		)
	),
	'PTI_13G01380' => array(
		'gene_id' => 'PTI_13G01380',
		'e_value' => '3e-08',
		'bit_score' => '58.9',
		'alignment_length' => '275',
		'identity_percentage' => '25.45',
		'species' => 'ptri',
		'common_name' => 'Phaeodactylum tricornutum',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P007764'
		)
	),
	'CR07G02500' => array(
		'gene_id' => 'CR07G02500',
		'e_value' => '1e-06',
		'bit_score' => '54.7',
		'alignment_length' => '230',
		'identity_percentage' => '26.52',
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P009635'
		)
	)
)
$similarity_hits_species = array(
	'ath' => array(
		(int) 0 => 'AT2G39140',
		(int) 1 => 'AT3G43340'
	),
	'atr' => array(
		(int) 0 => 'ATR_00161G00240'
	),
	'osa' => array(
		(int) 0 => 'OS03G05806'
	),
	'ppa' => array(
		(int) 0 => 'PP00075G00270'
	),
	'mrcc299' => array(
		(int) 0 => 'MRCC299_08G01570',
		(int) 1 => 'MRCC299_10G05220',
		(int) 2 => 'MRCC299_01G01190'
	),
	'ota' => array(
		(int) 0 => 'OT_06G04650',
		(int) 1 => 'OT_02G05090',
		(int) 2 => 'OT_17G02350',
		(int) 3 => 'OT_17G00250'
	),
	'cvu' => array(
		(int) 0 => 'CV00G42670'
	),
	'ome' => array(
		(int) 0 => 'OM_05G04760',
		(int) 1 => 'OM_04G03740',
		(int) 2 => 'OM_17G00310',
		(int) 3 => 'OM_17G02630'
	),
	'vca' => array(
		(int) 0 => 'VC00G99160',
		(int) 1 => 'VC00G58980'
	),
	'orcc809' => array(
		(int) 0 => 'ORCC809_07G00090',
		(int) 1 => 'ORCC809_02G00170',
		(int) 2 => 'ORCC809_16G02390',
		(int) 3 => 'ORCC809_16G00280'
	),
	'prcc4223' => array(
		(int) 0 => 'RCC4223.06g01030'
	),
	'pse3' => array(
		(int) 0 => 'PI00G64170'
	),
	'bprrcc1105' => array(
		(int) 0 => 'BPRRCC1105_05G04920',
		(int) 1 => 'BPRRCC1105_14G02080',
		(int) 2 => 'BPRRCC1105_12G00130'
	),
	'mpu' => array(
		(int) 0 => 'MP11G02340',
		(int) 1 => 'MP03G07990',
		(int) 2 => 'MP12G02020',
		(int) 3 => 'MP12G00880'
	),
	'acg' => array(
		(int) 0 => 'AC00G69930'
	),
	'apr' => array(
		(int) 0 => 'AP00G63980'
	),
	'cre' => array(
		(int) 0 => 'CR02G05760',
		(int) 1 => 'CR07G02500'
	),
	'olu' => array(
		(int) 0 => 'OL06G04530',
		(int) 1 => 'OL02G06050',
		(int) 2 => 'OL16G00260',
		(int) 3 => 'OL16G02410'
	),
	'hsp' => array(
		(int) 0 => 'HE0000G59460'
	),
	'gsu' => array(
		(int) 0 => 'gsu36410'
	),
	'esi' => array(
		(int) 0 => 'ES0187G00170',
		(int) 1 => 'ES0012G00560',
		(int) 2 => 'ES0004G00400'
	),
	'phs' => array(
		(int) 0 => 'phs50290',
		(int) 1 => 'phs342110'
	),
	'ddi' => array(
		(int) 0 => 'DDB_G0276449',
		(int) 1 => 'DDB_G0282961'
	),
	'pte' => array(
		(int) 0 => 'pte573810',
		(int) 1 => 'pte30170'
	),
	'ptri' => array(
		(int) 0 => 'PTI_04G00780',
		(int) 1 => 'PTI_10G03360',
		(int) 2 => 'PTI_16G02370',
		(int) 3 => 'PTI_13G01380'
	),
	'ccr' => array(
		(int) 0 => 'ccr196000',
		(int) 1 => 'ccr35300'
	),
	'cme' => array(
		(int) 0 => 'CM11G01820'
	),
	'fcy' => array(
		(int) 0 => 'FC007G01990',
		(int) 1 => 'FC001G18500',
		(int) 2 => 'FC113G00030',
		(int) 3 => 'FC031G01010',
		(int) 4 => 'FC001G03480',
		(int) 5 => 'FC005G03840'
	),
	'tps' => array(
		(int) 0 => 'TP07G01290',
		(int) 1 => 'TP01G02830'
	),
	'emh' => array(
		(int) 0 => 'emh407840',
		(int) 1 => 'emh619950',
		(int) 2 => 'emh123680',
		(int) 3 => 'emh571240',
		(int) 4 => 'emh161120',
		(int) 5 => 'emh471710',
		(int) 6 => 'emh95350',
		(int) 7 => 'emh85510'
	),
	'aan' => array(
		(int) 0 => 'AA0118G00040',
		(int) 1 => 'AA0003G03110'
	),
	'nga' => array(
		(int) 0 => 'Naga_100056g17'
	),
	'cnc64a' => array(
		(int) 0 => 'CNC64A_011G01140'
	)
)
$gene_id = 'AT2G39140'
$all_species_index = array(
	(int) 0 => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333'
	),
	(int) 1 => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702'
	),
	(int) 2 => array(
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'tax_id' => '763042'
	),
	(int) 3 => array(
		'species' => 'aan',
		'common_name' => 'Aureococcus anophagefferens',
		'tax_id' => '44056'
	),
	(int) 4 => array(
		'species' => 'apr',
		'common_name' => 'Auxenochlorella protothecoides',
		'tax_id' => '3075'
	),
	(int) 5 => array(
		'species' => 'bprrcc1105',
		'common_name' => 'Bathycoccus prasinos',
		'tax_id' => '41875'
	),
	(int) 6 => array(
		'species' => 'cel',
		'common_name' => 'Caenorhabditis elegans',
		'tax_id' => '6239'
	),
	(int) 7 => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055'
	),
	(int) 8 => array(
		'species' => 'cnc64a',
		'common_name' => 'Chlorella sp NC64A',
		'tax_id' => '310507'
	),
	(int) 9 => array(
		'species' => 'ccr',
		'common_name' => 'Chondrus crispus',
		'tax_id' => '2769'
	),
	(int) 10 => array(
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'tax_id' => '574566'
	),
	(int) 11 => array(
		'species' => 'cme',
		'common_name' => 'Cyanidioschyzon merolae',
		'tax_id' => '45157'
	),
	(int) 12 => array(
		'species' => 'ddi',
		'common_name' => 'Dictyostelium discoideum',
		'tax_id' => '44689'
	),
	(int) 13 => array(
		'species' => 'drm',
		'common_name' => 'Drosophila melanogaster',
		'tax_id' => '7227'
	),
	(int) 14 => array(
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'tax_id' => '2880'
	),
	(int) 15 => array(
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'tax_id' => '280463'
	),
	(int) 16 => array(
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'tax_id' => '186039'
	),
	(int) 17 => array(
		'species' => 'gsu',
		'common_name' => 'Galdieria sulphuraria',
		'tax_id' => '130081'
	),
	(int) 18 => array(
		'species' => 'hsp',
		'common_name' => 'Helicosporidium sp. ',
		'tax_id' => '145475'
	),
	(int) 19 => array(
		'species' => 'hom',
		'common_name' => 'Homo sapiens',
		'tax_id' => '9606'
	),
	(int) 20 => array(
		'species' => 'mpu',
		'common_name' => 'Micromonas pusilla strain CCMP1545',
		'tax_id' => '564608'
	),
	(int) 21 => array(
		'species' => 'mrcc299',
		'common_name' => 'Micromonas sp RCC299',
		'tax_id' => '296587'
	),
	(int) 22 => array(
		'species' => 'mus',
		'common_name' => 'Mus musculus',
		'tax_id' => '10090'
	),
	(int) 23 => array(
		'species' => 'nga',
		'common_name' => 'Nannochloropsis gaditana',
		'tax_id' => '72520'
	),
	(int) 24 => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'tax_id' => '4530'
	),
	(int) 25 => array(
		'species' => 'olu',
		'common_name' => 'Ostreococcus lucimarinus',
		'tax_id' => '242159'
	),
	(int) 26 => array(
		'species' => 'ome',
		'common_name' => 'Ostreococcus mediterraneus',
		'tax_id' => '1486918'
	),
	(int) 27 => array(
		'species' => 'orcc809',
		'common_name' => 'Ostreococcus sp RCC809',
		'tax_id' => '385169'
	),
	(int) 28 => array(
		'species' => 'ota',
		'common_name' => 'Ostreococcus tauri',
		'tax_id' => '70448'
	),
	(int) 29 => array(
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'tax_id' => '5888'
	),
	(int) 30 => array(
		'species' => 'ptri',
		'common_name' => 'Phaeodactylum tricornutum',
		'tax_id' => '2850'
	),
	(int) 31 => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'tax_id' => '3218'
	),
	(int) 32 => array(
		'species' => 'phs',
		'common_name' => 'Phytophtora sojae',
		'tax_id' => '67593'
	),
	(int) 33 => array(
		'species' => 'pse3',
		'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
		'tax_id' => '1470871'
	),
	(int) 34 => array(
		'species' => 'prcc4223',
		'common_name' => 'Picochlorum_RCC4223',
		'tax_id' => '249344'
	),
	(int) 35 => array(
		'species' => 'sac',
		'common_name' => 'Saccharomyces cerevisiae strain S288C',
		'tax_id' => '4932'
	),
	(int) 36 => array(
		'species' => 'scp',
		'common_name' => 'Schizosaccharomyces pombe',
		'tax_id' => '4896'
	),
	(int) 37 => array(
		'species' => 'tps',
		'common_name' => 'Thalassiosira pseudonana',
		'tax_id' => '35128'
	),
	(int) 38 => array(
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'tax_id' => '3067'
	)
)
$all_species = array(
	'atr' => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333'
	),
	'ath' => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702'
	),
	'acg' => array(
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'tax_id' => '763042'
	),
	'aan' => array(
		'species' => 'aan',
		'common_name' => 'Aureococcus anophagefferens',
		'tax_id' => '44056'
	),
	'apr' => array(
		'species' => 'apr',
		'common_name' => 'Auxenochlorella protothecoides',
		'tax_id' => '3075'
	),
	'bprrcc1105' => array(
		'species' => 'bprrcc1105',
		'common_name' => 'Bathycoccus prasinos',
		'tax_id' => '41875'
	),
	'cel' => array(
		'species' => 'cel',
		'common_name' => 'Caenorhabditis elegans',
		'tax_id' => '6239'
	),
	'cre' => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055'
	),
	'cnc64a' => array(
		'species' => 'cnc64a',
		'common_name' => 'Chlorella sp NC64A',
		'tax_id' => '310507'
	),
	'ccr' => array(
		'species' => 'ccr',
		'common_name' => 'Chondrus crispus',
		'tax_id' => '2769'
	),
	'cvu' => array(
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'tax_id' => '574566'
	),
	'cme' => array(
		'species' => 'cme',
		'common_name' => 'Cyanidioschyzon merolae',
		'tax_id' => '45157'
	),
	'ddi' => array(
		'species' => 'ddi',
		'common_name' => 'Dictyostelium discoideum',
		'tax_id' => '44689'
	),
	'drm' => array(
		'species' => 'drm',
		'common_name' => 'Drosophila melanogaster',
		'tax_id' => '7227'
	),
	'esi' => array(
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'tax_id' => '2880'
	),
	'emh' => array(
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'tax_id' => '280463'
	),
	'fcy' => array(
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'tax_id' => '186039'
	),
	'gsu' => array(
		'species' => 'gsu',
		'common_name' => 'Galdieria sulphuraria',
		'tax_id' => '130081'
	),
	'hsp' => array(
		'species' => 'hsp',
		'common_name' => 'Helicosporidium sp. ',
		'tax_id' => '145475'
	),
	'hom' => array(
		'species' => 'hom',
		'common_name' => 'Homo sapiens',
		'tax_id' => '9606'
	),
	'mpu' => array(
		'species' => 'mpu',
		'common_name' => 'Micromonas pusilla strain CCMP1545',
		'tax_id' => '564608'
	),
	'mrcc299' => array(
		'species' => 'mrcc299',
		'common_name' => 'Micromonas sp RCC299',
		'tax_id' => '296587'
	),
	'mus' => array(
		'species' => 'mus',
		'common_name' => 'Mus musculus',
		'tax_id' => '10090'
	),
	'nga' => array(
		'species' => 'nga',
		'common_name' => 'Nannochloropsis gaditana',
		'tax_id' => '72520'
	),
	'osa' => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'tax_id' => '4530'
	),
	'olu' => array(
		'species' => 'olu',
		'common_name' => 'Ostreococcus lucimarinus',
		'tax_id' => '242159'
	),
	'ome' => array(
		'species' => 'ome',
		'common_name' => 'Ostreococcus mediterraneus',
		'tax_id' => '1486918'
	),
	'orcc809' => array(
		'species' => 'orcc809',
		'common_name' => 'Ostreococcus sp RCC809',
		'tax_id' => '385169'
	),
	'ota' => array(
		'species' => 'ota',
		'common_name' => 'Ostreococcus tauri',
		'tax_id' => '70448'
	),
	'pte' => array(
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'tax_id' => '5888'
	),
	'ptri' => array(
		'species' => 'ptri',
		'common_name' => 'Phaeodactylum tricornutum',
		'tax_id' => '2850'
	),
	'ppa' => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'tax_id' => '3218'
	),
	'phs' => array(
		'species' => 'phs',
		'common_name' => 'Phytophtora sojae',
		'tax_id' => '67593'
	),
	'pse3' => array(
		'species' => 'pse3',
		'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
		'tax_id' => '1470871'
	),
	'prcc4223' => array(
		'species' => 'prcc4223',
		'common_name' => 'Picochlorum_RCC4223',
		'tax_id' => '249344'
	),
	'sac' => array(
		'species' => 'sac',
		'common_name' => 'Saccharomyces cerevisiae strain S288C',
		'tax_id' => '4932'
	),
	'scp' => array(
		'species' => 'scp',
		'common_name' => 'Schizosaccharomyces pombe',
		'tax_id' => '4896'
	),
	'tps' => array(
		'species' => 'tps',
		'common_name' => 'Thalassiosira pseudonana',
		'tax_id' => '35128'
	),
	'vca' => array(
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'tax_id' => '3067'
	)
)
$gene_family_types_information = array(
	'HOMFAM' => array(
		'id' => 'HOMFAM',
		'name' => 'Homologous gene family',
		'prefix' => 'HOM',
		'gene_type' => 'coding',
		'method' => '{}',
		'ancestry' => 'homology',
		'parent_id' => ''
	),
	'ORTHOFAM' => array(
		'id' => 'ORTHOFAM',
		'name' => 'Orthologous gene family',
		'prefix' => 'ORTH',
		'gene_type' => 'coding',
		'method' => '{}',
		'ancestry' => 'orthology',
		'parent_id' => 'HOMFAM'
	)
)
$gene_family_types_configuration = array()
$data_identifier = 'AT2G39140'
$data_type = 'gene_id'
$allow_async_use = true
$gene_placeholder = 'RCC4223.05g04500'
$gf_placeholder = 'HOM03P011649'
$title_for_layout = 'Pico-PLAZA 3.0 : Interactive Phylogenetics Module'
$collapse1 = ''
$collapse2 = 'collapse in'
$similarity_hit = array(
	'gene_id' => 'CNC64A_135G00010',
	'e_value' => '8e-39',
	'bit_score' => '143',
	'alignment_length' => '180',
	'identity_percentage' => '44.44',
	'gf' => array(
		'HOMFAM' => 'HOM03P000691',
		'ORTHOFAM' => 'ORTHO03P003650'
	)
)
$checked = null
$similarity_hit_gene = 'CNC64A_135G00010'
include - APP/View/Analysis/custom_tree_creation.ctp, line 169
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::render() - CORE/Cake/View/View.php, line 473
Controller::render() - CORE/Cake/Controller/Controller.php, line 963
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167
[main] - APP/webroot/index.php, line 146

Notice (8): Undefined index: common_name [APP/View/Analysis/custom_tree_creation.ctp, line 169]Code Context                                                    echo "<td><input type='checkbox' name='selected_genes[]' value='".$similarity_hit['gene_id']."' ".$checked." /></td>\n";
                                                    echo "<td>".$this->Html->link($similarity_hit_gene,array("controller"=>"genes","action"=>"view",$similarity_hit_gene),array("target"=>"_blank"))."</td>\n";
                                                    echo "<td>".$this->Html->link($similarity_hit['common_name'],array("controller"=>"organism","action"=>"view",urlencode($similarity_hit['common_name'])))."</td>\n";
$viewFile = '/xtras/group/biocomp/plaza/versions/plaza_pico_03/app/View/Analysis/custom_tree_creation.ctp'
$dataForView = array(
	'allowed_extra_sequences_types' => array(
		'aa' => 'Protein',
		'dna' => 'DNA'
	),
	'allowed_editing_methods' => array(
		'column' => 'Positions only',
		'row' => 'Genes only',
		'column_row' => 'Positions and Genes',
		'none' => 'No editing'
	),
	'allowed_tree_programs' => array(
		'fasttree' => 'FastTree',
		'iqtree' => 'IQ-TREE (includes model testing)',
		'raxml' => 'RAxML',
		'phyml' => 'PhyML'
	),
	'allowed_msa_programs' => array(
		'muscle' => 'MUSCLE',
		'mafft' => 'MAFFT'
	),
	'allowed_number_blasthits' => array(
		(int) 0 => 'all',
		(int) 1 => (int) 20,
		(int) 2 => (int) 10,
		(int) 3 => (int) 5,
		(int) 4 => (int) 1
	),
	'similarity_hits_genes' => array(
		'AT2G39140' => array(
			'gene_id' => 'AT2G39140',
			'e_value' => '0.0',
			'bit_score' => '838',
			'alignment_length' => '411',
			'identity_percentage' => '100.00',
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ATR_00161G00240' => array(
			'gene_id' => 'ATR_00161G00240',
			'e_value' => '6e-141',
			'bit_score' => '415',
			'alignment_length' => '339',
			'identity_percentage' => '64.01',
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OS03G05806' => array(
			'gene_id' => 'OS03G05806',
			'e_value' => '9e-128',
			'bit_score' => '382',
			'alignment_length' => '359',
			'identity_percentage' => '56.82',
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PP00075G00270' => array(
			'gene_id' => 'PP00075G00270',
			'e_value' => '3e-109',
			'bit_score' => '333',
			'alignment_length' => '296',
			'identity_percentage' => '57.09',
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'MRCC299_08G01570' => array(
			'gene_id' => 'MRCC299_08G01570',
			'e_value' => '2e-69',
			'bit_score' => '226',
			'alignment_length' => '257',
			'identity_percentage' => '47.08',
			'species' => 'mrcc299',
			'common_name' => 'Micromonas sp RCC299',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OT_06G04650' => array(
			'gene_id' => 'OT_06G04650',
			'e_value' => '9e-65',
			'bit_score' => '219',
			'alignment_length' => '247',
			'identity_percentage' => '44.94',
			'species' => 'ota',
			'common_name' => 'Ostreococcus tauri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CV00G42670' => array(
			'gene_id' => 'CV00G42670',
			'e_value' => '2e-64',
			'bit_score' => '214',
			'alignment_length' => '251',
			'identity_percentage' => '46.61',
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OM_05G04760' => array(
			'gene_id' => 'OM_05G04760',
			'e_value' => '5e-61',
			'bit_score' => '209',
			'alignment_length' => '271',
			'identity_percentage' => '41.70',
			'species' => 'ome',
			'common_name' => 'Ostreococcus mediterraneus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'VC00G99160' => array(
			'gene_id' => 'VC00G99160',
			'e_value' => '3e-60',
			'bit_score' => '206',
			'alignment_length' => '256',
			'identity_percentage' => '47.27',
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ORCC809_07G00090' => array(
			'gene_id' => 'ORCC809_07G00090',
			'e_value' => '4e-60',
			'bit_score' => '201',
			'alignment_length' => '231',
			'identity_percentage' => '44.59',
			'species' => 'orcc809',
			'common_name' => 'Ostreococcus sp RCC809',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'RCC4223.06g01030' => array(
			'gene_id' => 'RCC4223.06g01030',
			'e_value' => '3e-58',
			'bit_score' => '200',
			'alignment_length' => '254',
			'identity_percentage' => '44.09',
			'species' => 'prcc4223',
			'common_name' => 'Picochlorum_RCC4223',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PI00G64170' => array(
			'gene_id' => 'PI00G64170',
			'e_value' => '4e-58',
			'bit_score' => '199',
			'alignment_length' => '254',
			'identity_percentage' => '44.49',
			'species' => 'pse3',
			'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'BPRRCC1105_05G04920' => array(
			'gene_id' => 'BPRRCC1105_05G04920',
			'e_value' => '2e-57',
			'bit_score' => '199',
			'alignment_length' => '267',
			'identity_percentage' => '41.95',
			'species' => 'bprrcc1105',
			'common_name' => 'Bathycoccus prasinos',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'MP11G02340' => array(
			'gene_id' => 'MP11G02340',
			'e_value' => '7e-55',
			'bit_score' => '192',
			'alignment_length' => '276',
			'identity_percentage' => '42.39',
			'species' => 'mpu',
			'common_name' => 'Micromonas pusilla strain CCMP1545',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AC00G69930' => array(
			'gene_id' => 'AC00G69930',
			'e_value' => '9e-54',
			'bit_score' => '186',
			'alignment_length' => '251',
			'identity_percentage' => '46.22',
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AP00G63980' => array(
			'gene_id' => 'AP00G63980',
			'e_value' => '4e-51',
			'bit_score' => '180',
			'alignment_length' => '266',
			'identity_percentage' => '42.86',
			'species' => 'apr',
			'common_name' => 'Auxenochlorella protothecoides',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CR02G05760' => array(
			'gene_id' => 'CR02G05760',
			'e_value' => '3e-49',
			'bit_score' => '179',
			'alignment_length' => '188',
			'identity_percentage' => '50.53',
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OL06G04530' => array(
			'gene_id' => 'OL06G04530',
			'e_value' => '3e-48',
			'bit_score' => '170',
			'alignment_length' => '231',
			'identity_percentage' => '43.72',
			'species' => 'olu',
			'common_name' => 'Ostreococcus lucimarinus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AT3G43340' => array(
			'gene_id' => 'AT3G43340',
			'e_value' => '3e-40',
			'bit_score' => '144',
			'alignment_length' => '74',
			'identity_percentage' => '91.89',
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CNC64A_135G00010' => array(
			'gene_id' => 'CNC64A_135G00010',
			'e_value' => '8e-39',
			'bit_score' => '143',
			'alignment_length' => '180',
			'identity_percentage' => '44.44',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'HE0000G59460' => array(
			'gene_id' => 'HE0000G59460',
			'e_value' => '5e-34',
			'bit_score' => '130',
			'alignment_length' => '203',
			'identity_percentage' => '38.92',
			'species' => 'hsp',
			'common_name' => 'Helicosporidium sp. ',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'gsu36410' => array(
			'gene_id' => 'gsu36410',
			'e_value' => '9e-32',
			'bit_score' => '127',
			'alignment_length' => '252',
			'identity_percentage' => '32.94',
			'species' => 'gsu',
			'common_name' => 'Galdieria sulphuraria',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ES0187G00170' => array(
			'gene_id' => 'ES0187G00170',
			'e_value' => '1e-28',
			'bit_score' => '120',
			'alignment_length' => '252',
			'identity_percentage' => '32.54',
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'phs50290' => array(
			'gene_id' => 'phs50290',
			'e_value' => '7e-27',
			'bit_score' => '113',
			'alignment_length' => '244',
			'identity_percentage' => '33.20',
			'species' => 'phs',
			'common_name' => 'Phytophtora sojae',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'DDB_G0276449' => array(
			'gene_id' => 'DDB_G0276449',
			'e_value' => '5e-25',
			'bit_score' => '108',
			'alignment_length' => '255',
			'identity_percentage' => '32.16',
			'species' => 'ddi',
			'common_name' => 'Dictyostelium discoideum',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OT_02G05090' => array(
			'gene_id' => 'OT_02G05090',
			'e_value' => '2e-23',
			'bit_score' => '103',
			'alignment_length' => '261',
			'identity_percentage' => '29.89',
			'species' => 'ota',
			'common_name' => 'Ostreococcus tauri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'phs342110' => array(
			'gene_id' => 'phs342110',
			'e_value' => '2e-23',
			'bit_score' => '102',
			'alignment_length' => '237',
			'identity_percentage' => '32.91',
			'species' => 'phs',
			'common_name' => 'Phytophtora sojae',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'pte573810' => array(
			'gene_id' => 'pte573810',
			'e_value' => '7e-23',
			'bit_score' => '102',
			'alignment_length' => '264',
			'identity_percentage' => '29.92',
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'pte30170' => array(
			'gene_id' => 'pte30170',
			'e_value' => '1e-22',
			'bit_score' => '101',
			'alignment_length' => '263',
			'identity_percentage' => '30.80',
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ORCC809_02G00170' => array(
			'gene_id' => 'ORCC809_02G00170',
			'e_value' => '7e-22',
			'bit_score' => '98.2',
			'alignment_length' => '263',
			'identity_percentage' => '29.28',
			'species' => 'orcc809',
			'common_name' => 'Ostreococcus sp RCC809',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OM_04G03740' => array(
			'gene_id' => 'OM_04G03740',
			'e_value' => '4e-21',
			'bit_score' => '97.1',
			'alignment_length' => '278',
			'identity_percentage' => '27.34',
			'species' => 'ome',
			'common_name' => 'Ostreococcus mediterraneus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ES0012G00560' => array(
			'gene_id' => 'ES0012G00560',
			'e_value' => '3e-20',
			'bit_score' => '96.3',
			'alignment_length' => '249',
			'identity_percentage' => '32.13',
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OM_17G00310' => array(
			'gene_id' => 'OM_17G00310',
			'e_value' => '4e-20',
			'bit_score' => '95.1',
			'alignment_length' => '263',
			'identity_percentage' => '29.28',
			'species' => 'ome',
			'common_name' => 'Ostreococcus mediterraneus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OL02G06050' => array(
			'gene_id' => 'OL02G06050',
			'e_value' => '8e-20',
			'bit_score' => '92.0',
			'alignment_length' => '237',
			'identity_percentage' => '31.22',
			'species' => 'olu',
			'common_name' => 'Ostreococcus lucimarinus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'BPRRCC1105_14G02080' => array(
			'gene_id' => 'BPRRCC1105_14G02080',
			'e_value' => '1e-19',
			'bit_score' => '91.7',
			'alignment_length' => '221',
			'identity_percentage' => '34.39',
			'species' => 'bprrcc1105',
			'common_name' => 'Bathycoccus prasinos',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ORCC809_16G02390' => array(
			'gene_id' => 'ORCC809_16G02390',
			'e_value' => '3e-18',
			'bit_score' => '87.8',
			'alignment_length' => '237',
			'identity_percentage' => '30.80',
			'species' => 'orcc809',
			'common_name' => 'Ostreococcus sp RCC809',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PTI_04G00780' => array(
			'gene_id' => 'PTI_04G00780',
			'e_value' => '9e-18',
			'bit_score' => '86.7',
			'alignment_length' => '242',
			'identity_percentage' => '31.40',
			'species' => 'ptri',
			'common_name' => 'Phaeodactylum tricornutum',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PTI_10G03360' => array(
			'gene_id' => 'PTI_10G03360',
			'e_value' => '2e-17',
			'bit_score' => '87.0',
			'alignment_length' => '269',
			'identity_percentage' => '30.48',
			'species' => 'ptri',
			'common_name' => 'Phaeodactylum tricornutum',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'DDB_G0282961' => array(
			'gene_id' => 'DDB_G0282961',
			'e_value' => '3e-16',
			'bit_score' => '84.7',
			'alignment_length' => '253',
			'identity_percentage' => '28.85',
			'species' => 'ddi',
			'common_name' => 'Dictyostelium discoideum',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'MRCC299_10G05220' => array(
			'gene_id' => 'MRCC299_10G05220',
			'e_value' => '3e-16',
			'bit_score' => '81.6',
			'alignment_length' => '262',
			'identity_percentage' => '29.39',
			'species' => 'mrcc299',
			'common_name' => 'Micromonas sp RCC299',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ccr196000' => array(
			'gene_id' => 'ccr196000',
			'e_value' => '1e-15',
			'bit_score' => '81.6',
			'alignment_length' => '282',
			'identity_percentage' => '26.60',
			'species' => 'ccr',
			'common_name' => 'Chondrus crispus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OL16G00260' => array(
			'gene_id' => 'OL16G00260',
			'e_value' => '1e-15',
			'bit_score' => '79.7',
			'alignment_length' => '248',
			'identity_percentage' => '27.42',
			'species' => 'olu',
			'common_name' => 'Ostreococcus lucimarinus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CM11G01820' => array(
			'gene_id' => 'CM11G01820',
			'e_value' => '3e-15',
			'bit_score' => '80.5',
			'alignment_length' => '260',
			'identity_percentage' => '28.46',
			'species' => 'cme',
			'common_name' => 'Cyanidioschyzon merolae',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OT_17G02350' => array(
			'gene_id' => 'OT_17G02350',
			'e_value' => '3e-15',
			'bit_score' => '79.0',
			'alignment_length' => '234',
			'identity_percentage' => '27.78',
			'species' => 'ota',
			'common_name' => 'Ostreococcus tauri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'FC007G01990' => array(
			'gene_id' => 'FC007G01990',
			'e_value' => '4e-15',
			'bit_score' => '77.8',
			'alignment_length' => '188',
			'identity_percentage' => '32.45',
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'TP07G01290' => array(
			'gene_id' => 'TP07G01290',
			'e_value' => '6e-15',
			'bit_score' => '79.7',
			'alignment_length' => '234',
			'identity_percentage' => '29.91',
			'species' => 'tps',
			'common_name' => 'Thalassiosira pseudonana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'MP03G07990' => array(
			'gene_id' => 'MP03G07990',
			'e_value' => '1e-14',
			'bit_score' => '77.8',
			'alignment_length' => '251',
			'identity_percentage' => '28.69',
			'species' => 'mpu',
			'common_name' => 'Micromonas pusilla strain CCMP1545',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'MP12G02020' => array(
			'gene_id' => 'MP12G02020',
			'e_value' => '3e-14',
			'bit_score' => '77.8',
			'alignment_length' => '248',
			'identity_percentage' => '28.63',
			'species' => 'mpu',
			'common_name' => 'Micromonas pusilla strain CCMP1545',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'TP01G02830' => array(
			'gene_id' => 'TP01G02830',
			'e_value' => '1e-13',
			'bit_score' => '75.9',
			'alignment_length' => '286',
			'identity_percentage' => '28.32',
			'species' => 'tps',
			'common_name' => 'Thalassiosira pseudonana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ccr35300' => array(
			'gene_id' => 'ccr35300',
			'e_value' => '3e-13',
			'bit_score' => '73.6',
			'alignment_length' => '223',
			'identity_percentage' => '28.25',
			'species' => 'ccr',
			'common_name' => 'Chondrus crispus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'VC00G58980' => array(
			'gene_id' => 'VC00G58980',
			'e_value' => '3e-13',
			'bit_score' => '75.1',
			'alignment_length' => '237',
			'identity_percentage' => '27.00',
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'FC001G18500' => array(
			'gene_id' => 'FC001G18500',
			'e_value' => '3e-13',
			'bit_score' => '72.8',
			'alignment_length' => '257',
			'identity_percentage' => '29.18',
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'FC113G00030' => array(
			'gene_id' => 'FC113G00030',
			'e_value' => '6e-13',
			'bit_score' => '73.2',
			'alignment_length' => '264',
			'identity_percentage' => '27.65',
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OT_17G00250' => array(
			'gene_id' => 'OT_17G00250',
			'e_value' => '6e-13',
			'bit_score' => '73.9',
			'alignment_length' => '259',
			'identity_percentage' => '26.25',
			'species' => 'ota',
			'common_name' => 'Ostreococcus tauri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'emh407840' => array(
			'gene_id' => 'emh407840',
			'e_value' => '8e-13',
			'bit_score' => '72.0',
			'alignment_length' => '128',
			'identity_percentage' => '35.16',
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'emh619950' => array(
			'gene_id' => 'emh619950',
			'e_value' => '1e-12',
			'bit_score' => '70.5',
			'alignment_length' => '227',
			'identity_percentage' => '29.07',
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'emh123680' => array(
			'gene_id' => 'emh123680',
			'e_value' => '1e-12',
			'bit_score' => '70.5',
			'alignment_length' => '227',
			'identity_percentage' => '29.07',
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OL16G02410' => array(
			'gene_id' => 'OL16G02410',
			'e_value' => '1e-12',
			'bit_score' => '71.6',
			'alignment_length' => '234',
			'identity_percentage' => '26.07',
			'species' => 'olu',
			'common_name' => 'Ostreococcus lucimarinus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ORCC809_16G00280' => array(
			'gene_id' => 'ORCC809_16G00280',
			'e_value' => '2e-12',
			'bit_score' => '71.2',
			'alignment_length' => '236',
			'identity_percentage' => '27.54',
			'species' => 'orcc809',
			'common_name' => 'Ostreococcus sp RCC809',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ES0004G00400' => array(
			'gene_id' => 'ES0004G00400',
			'e_value' => '6e-12',
			'bit_score' => '70.9',
			'alignment_length' => '260',
			'identity_percentage' => '30.38',
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'FC031G01010' => array(
			'gene_id' => 'FC031G01010',
			'e_value' => '7e-12',
			'bit_score' => '71.6',
			'alignment_length' => '265',
			'identity_percentage' => '27.55',
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'MRCC299_01G01190' => array(
			'gene_id' => 'MRCC299_01G01190',
			'e_value' => '1e-11',
			'bit_score' => '69.3',
			'alignment_length' => '240',
			'identity_percentage' => '29.58',
			'species' => 'mrcc299',
			'common_name' => 'Micromonas sp RCC299',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AA0118G00040' => array(
			'gene_id' => 'AA0118G00040',
			'e_value' => '7e-11',
			'bit_score' => '66.2',
			'alignment_length' => '252',
			'identity_percentage' => '29.76',
			'species' => 'aan',
			'common_name' => 'Aureococcus anophagefferens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'emh571240' => array(
			'gene_id' => 'emh571240',
			'e_value' => '8e-11',
			'bit_score' => '65.1',
			'alignment_length' => '217',
			'identity_percentage' => '25.35',
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AA0003G03110' => array(
			'gene_id' => 'AA0003G03110',
			'e_value' => '8e-11',
			'bit_score' => '66.2',
			'alignment_length' => '252',
			'identity_percentage' => '29.76',
			'species' => 'aan',
			'common_name' => 'Aureococcus anophagefferens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'emh161120' => array(
			'gene_id' => 'emh161120',
			'e_value' => '1e-10',
			'bit_score' => '64.7',
			'alignment_length' => '208',
			'identity_percentage' => '25.96',
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'emh471710' => array(
			'gene_id' => 'emh471710',
			'e_value' => '1e-10',
			'bit_score' => '64.7',
			'alignment_length' => '215',
			'identity_percentage' => '25.12',
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PTI_16G02370' => array(
			'gene_id' => 'PTI_16G02370',
			'e_value' => '2e-10',
			'bit_score' => '65.9',
			'alignment_length' => '330',
			'identity_percentage' => '26.06',
			'species' => 'ptri',
			'common_name' => 'Phaeodactylum tricornutum',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'FC001G03480' => array(
			'gene_id' => 'FC001G03480',
			'e_value' => '8e-10',
			'bit_score' => '64.3',
			'alignment_length' => '268',
			'identity_percentage' => '29.85',
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OM_17G02630' => array(
			'gene_id' => 'OM_17G02630',
			'e_value' => '9e-10',
			'bit_score' => '63.2',
			'alignment_length' => '185',
			'identity_percentage' => '29.19',
			'species' => 'ome',
			'common_name' => 'Ostreococcus mediterraneus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'MP12G00880' => array(
			'gene_id' => 'MP12G00880',
			'e_value' => '1e-09',
			'bit_score' => '62.0',
			'alignment_length' => '188',
			'identity_percentage' => '26.60',
			'species' => 'mpu',
			'common_name' => 'Micromonas pusilla strain CCMP1545',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'FC005G03840' => array(
			'gene_id' => 'FC005G03840',
			'e_value' => '2e-09',
			'bit_score' => '62.4',
			'alignment_length' => '185',
			'identity_percentage' => '29.19',
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'BPRRCC1105_12G00130' => array(
			'gene_id' => 'BPRRCC1105_12G00130',
			'e_value' => '5e-09',
			'bit_score' => '61.2',
			'alignment_length' => '204',
			'identity_percentage' => '27.45',
			'species' => 'bprrcc1105',
			'common_name' => 'Bathycoccus prasinos',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'Naga_100056g17' => array(
			'gene_id' => 'Naga_100056g17',
			'e_value' => '5e-09',
			'bit_score' => '61.6',
			'alignment_length' => '283',
			'identity_percentage' => '28.62',
			'species' => 'nga',
			'common_name' => 'Nannochloropsis gaditana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'emh95350' => array(
			'gene_id' => 'emh95350',
			'e_value' => '1e-08',
			'bit_score' => '58.2',
			'alignment_length' => '164',
			'identity_percentage' => '26.22',
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'emh85510' => array(
			'gene_id' => 'emh85510',
			'e_value' => '1e-08',
			'bit_score' => '60.5',
			'alignment_length' => '254',
			'identity_percentage' => '26.77',
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CNC64A_011G01140' => array(
			'gene_id' => 'CNC64A_011G01140',
			'e_value' => '1e-08',
			'bit_score' => '56.2',
			'alignment_length' => '58',
			'identity_percentage' => '46.55',
			'species' => 'cnc64a',
			'common_name' => 'Chlorella sp NC64A',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PTI_13G01380' => array(
			'gene_id' => 'PTI_13G01380',
			'e_value' => '3e-08',
			'bit_score' => '58.9',
			'alignment_length' => '275',
			'identity_percentage' => '25.45',
			'species' => 'ptri',
			'common_name' => 'Phaeodactylum tricornutum',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CR07G02500' => array(
			'gene_id' => 'CR07G02500',
			'e_value' => '1e-06',
			'bit_score' => '54.7',
			'alignment_length' => '230',
			'identity_percentage' => '26.52',
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'gf' => array(
				[maximum depth reached]
			)
		)
	),
	'similarity_hits_species' => array(
		'ath' => array(
			(int) 0 => 'AT2G39140',
			(int) 1 => 'AT3G43340'
		),
		'atr' => array(
			(int) 0 => 'ATR_00161G00240'
		),
		'osa' => array(
			(int) 0 => 'OS03G05806'
		),
		'ppa' => array(
			(int) 0 => 'PP00075G00270'
		),
		'mrcc299' => array(
			(int) 0 => 'MRCC299_08G01570',
			(int) 1 => 'MRCC299_10G05220',
			(int) 2 => 'MRCC299_01G01190'
		),
		'ota' => array(
			(int) 0 => 'OT_06G04650',
			(int) 1 => 'OT_02G05090',
			(int) 2 => 'OT_17G02350',
			(int) 3 => 'OT_17G00250'
		),
		'cvu' => array(
			(int) 0 => 'CV00G42670'
		),
		'ome' => array(
			(int) 0 => 'OM_05G04760',
			(int) 1 => 'OM_04G03740',
			(int) 2 => 'OM_17G00310',
			(int) 3 => 'OM_17G02630'
		),
		'vca' => array(
			(int) 0 => 'VC00G99160',
			(int) 1 => 'VC00G58980'
		),
		'orcc809' => array(
			(int) 0 => 'ORCC809_07G00090',
			(int) 1 => 'ORCC809_02G00170',
			(int) 2 => 'ORCC809_16G02390',
			(int) 3 => 'ORCC809_16G00280'
		),
		'prcc4223' => array(
			(int) 0 => 'RCC4223.06g01030'
		),
		'pse3' => array(
			(int) 0 => 'PI00G64170'
		),
		'bprrcc1105' => array(
			(int) 0 => 'BPRRCC1105_05G04920',
			(int) 1 => 'BPRRCC1105_14G02080',
			(int) 2 => 'BPRRCC1105_12G00130'
		),
		'mpu' => array(
			(int) 0 => 'MP11G02340',
			(int) 1 => 'MP03G07990',
			(int) 2 => 'MP12G02020',
			(int) 3 => 'MP12G00880'
		),
		'acg' => array(
			(int) 0 => 'AC00G69930'
		),
		'apr' => array(
			(int) 0 => 'AP00G63980'
		),
		'cre' => array(
			(int) 0 => 'CR02G05760',
			(int) 1 => 'CR07G02500'
		),
		'olu' => array(
			(int) 0 => 'OL06G04530',
			(int) 1 => 'OL02G06050',
			(int) 2 => 'OL16G00260',
			(int) 3 => 'OL16G02410'
		),
		'hsp' => array(
			(int) 0 => 'HE0000G59460'
		),
		'gsu' => array(
			(int) 0 => 'gsu36410'
		),
		'esi' => array(
			(int) 0 => 'ES0187G00170',
			(int) 1 => 'ES0012G00560',
			(int) 2 => 'ES0004G00400'
		),
		'phs' => array(
			(int) 0 => 'phs50290',
			(int) 1 => 'phs342110'
		),
		'ddi' => array(
			(int) 0 => 'DDB_G0276449',
			(int) 1 => 'DDB_G0282961'
		),
		'pte' => array(
			(int) 0 => 'pte573810',
			(int) 1 => 'pte30170'
		),
		'ptri' => array(
			(int) 0 => 'PTI_04G00780',
			(int) 1 => 'PTI_10G03360',
			(int) 2 => 'PTI_16G02370',
			(int) 3 => 'PTI_13G01380'
		),
		'ccr' => array(
			(int) 0 => 'ccr196000',
			(int) 1 => 'ccr35300'
		),
		'cme' => array(
			(int) 0 => 'CM11G01820'
		),
		'fcy' => array(
			(int) 0 => 'FC007G01990',
			(int) 1 => 'FC001G18500',
			(int) 2 => 'FC113G00030',
			(int) 3 => 'FC031G01010',
			(int) 4 => 'FC001G03480',
			(int) 5 => 'FC005G03840'
		),
		'tps' => array(
			(int) 0 => 'TP07G01290',
			(int) 1 => 'TP01G02830'
		),
		'emh' => array(
			(int) 0 => 'emh407840',
			(int) 1 => 'emh619950',
			(int) 2 => 'emh123680',
			(int) 3 => 'emh571240',
			(int) 4 => 'emh161120',
			(int) 5 => 'emh471710',
			(int) 6 => 'emh95350',
			(int) 7 => 'emh85510'
		),
		'aan' => array(
			(int) 0 => 'AA0118G00040',
			(int) 1 => 'AA0003G03110'
		),
		'nga' => array(
			(int) 0 => 'Naga_100056g17'
		),
		'cnc64a' => array(
			(int) 0 => 'CNC64A_011G01140'
		)
	),
	'gene_id' => 'AT2G39140',
	'all_species_index' => array(
		(int) 0 => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333'
		),
		(int) 1 => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702'
		),
		(int) 2 => array(
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'tax_id' => '763042'
		),
		(int) 3 => array(
			'species' => 'aan',
			'common_name' => 'Aureococcus anophagefferens',
			'tax_id' => '44056'
		),
		(int) 4 => array(
			'species' => 'apr',
			'common_name' => 'Auxenochlorella protothecoides',
			'tax_id' => '3075'
		),
		(int) 5 => array(
			'species' => 'bprrcc1105',
			'common_name' => 'Bathycoccus prasinos',
			'tax_id' => '41875'
		),
		(int) 6 => array(
			'species' => 'cel',
			'common_name' => 'Caenorhabditis elegans',
			'tax_id' => '6239'
		),
		(int) 7 => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055'
		),
		(int) 8 => array(
			'species' => 'cnc64a',
			'common_name' => 'Chlorella sp NC64A',
			'tax_id' => '310507'
		),
		(int) 9 => array(
			'species' => 'ccr',
			'common_name' => 'Chondrus crispus',
			'tax_id' => '2769'
		),
		(int) 10 => array(
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'tax_id' => '574566'
		),
		(int) 11 => array(
			'species' => 'cme',
			'common_name' => 'Cyanidioschyzon merolae',
			'tax_id' => '45157'
		),
		(int) 12 => array(
			'species' => 'ddi',
			'common_name' => 'Dictyostelium discoideum',
			'tax_id' => '44689'
		),
		(int) 13 => array(
			'species' => 'drm',
			'common_name' => 'Drosophila melanogaster',
			'tax_id' => '7227'
		),
		(int) 14 => array(
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'tax_id' => '2880'
		),
		(int) 15 => array(
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'tax_id' => '280463'
		),
		(int) 16 => array(
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'tax_id' => '186039'
		),
		(int) 17 => array(
			'species' => 'gsu',
			'common_name' => 'Galdieria sulphuraria',
			'tax_id' => '130081'
		),
		(int) 18 => array(
			'species' => 'hsp',
			'common_name' => 'Helicosporidium sp. ',
			'tax_id' => '145475'
		),
		(int) 19 => array(
			'species' => 'hom',
			'common_name' => 'Homo sapiens',
			'tax_id' => '9606'
		),
		(int) 20 => array(
			'species' => 'mpu',
			'common_name' => 'Micromonas pusilla strain CCMP1545',
			'tax_id' => '564608'
		),
		(int) 21 => array(
			'species' => 'mrcc299',
			'common_name' => 'Micromonas sp RCC299',
			'tax_id' => '296587'
		),
		(int) 22 => array(
			'species' => 'mus',
			'common_name' => 'Mus musculus',
			'tax_id' => '10090'
		),
		(int) 23 => array(
			'species' => 'nga',
			'common_name' => 'Nannochloropsis gaditana',
			'tax_id' => '72520'
		),
		(int) 24 => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'tax_id' => '4530'
		),
		(int) 25 => array(
			'species' => 'olu',
			'common_name' => 'Ostreococcus lucimarinus',
			'tax_id' => '242159'
		),
		(int) 26 => array(
			'species' => 'ome',
			'common_name' => 'Ostreococcus mediterraneus',
			'tax_id' => '1486918'
		),
		(int) 27 => array(
			'species' => 'orcc809',
			'common_name' => 'Ostreococcus sp RCC809',
			'tax_id' => '385169'
		),
		(int) 28 => array(
			'species' => 'ota',
			'common_name' => 'Ostreococcus tauri',
			'tax_id' => '70448'
		),
		(int) 29 => array(
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'tax_id' => '5888'
		),
		(int) 30 => array(
			'species' => 'ptri',
			'common_name' => 'Phaeodactylum tricornutum',
			'tax_id' => '2850'
		),
		(int) 31 => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'tax_id' => '3218'
		),
		(int) 32 => array(
			'species' => 'phs',
			'common_name' => 'Phytophtora sojae',
			'tax_id' => '67593'
		),
		(int) 33 => array(
			'species' => 'pse3',
			'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
			'tax_id' => '1470871'
		),
		(int) 34 => array(
			'species' => 'prcc4223',
			'common_name' => 'Picochlorum_RCC4223',
			'tax_id' => '249344'
		),
		(int) 35 => array(
			'species' => 'sac',
			'common_name' => 'Saccharomyces cerevisiae strain S288C',
			'tax_id' => '4932'
		),
		(int) 36 => array(
			'species' => 'scp',
			'common_name' => 'Schizosaccharomyces pombe',
			'tax_id' => '4896'
		),
		(int) 37 => array(
			'species' => 'tps',
			'common_name' => 'Thalassiosira pseudonana',
			'tax_id' => '35128'
		),
		(int) 38 => array(
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'tax_id' => '3067'
		)
	),
	'all_species' => array(
		'atr' => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333'
		),
		'ath' => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702'
		),
		'acg' => array(
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'tax_id' => '763042'
		),
		'aan' => array(
			'species' => 'aan',
			'common_name' => 'Aureococcus anophagefferens',
			'tax_id' => '44056'
		),
		'apr' => array(
			'species' => 'apr',
			'common_name' => 'Auxenochlorella protothecoides',
			'tax_id' => '3075'
		),
		'bprrcc1105' => array(
			'species' => 'bprrcc1105',
			'common_name' => 'Bathycoccus prasinos',
			'tax_id' => '41875'
		),
		'cel' => array(
			'species' => 'cel',
			'common_name' => 'Caenorhabditis elegans',
			'tax_id' => '6239'
		),
		'cre' => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055'
		),
		'cnc64a' => array(
			'species' => 'cnc64a',
			'common_name' => 'Chlorella sp NC64A',
			'tax_id' => '310507'
		),
		'ccr' => array(
			'species' => 'ccr',
			'common_name' => 'Chondrus crispus',
			'tax_id' => '2769'
		),
		'cvu' => array(
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'tax_id' => '574566'
		),
		'cme' => array(
			'species' => 'cme',
			'common_name' => 'Cyanidioschyzon merolae',
			'tax_id' => '45157'
		),
		'ddi' => array(
			'species' => 'ddi',
			'common_name' => 'Dictyostelium discoideum',
			'tax_id' => '44689'
		),
		'drm' => array(
			'species' => 'drm',
			'common_name' => 'Drosophila melanogaster',
			'tax_id' => '7227'
		),
		'esi' => array(
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'tax_id' => '2880'
		),
		'emh' => array(
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'tax_id' => '280463'
		),
		'fcy' => array(
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'tax_id' => '186039'
		),
		'gsu' => array(
			'species' => 'gsu',
			'common_name' => 'Galdieria sulphuraria',
			'tax_id' => '130081'
		),
		'hsp' => array(
			'species' => 'hsp',
			'common_name' => 'Helicosporidium sp. ',
			'tax_id' => '145475'
		),
		'hom' => array(
			'species' => 'hom',
			'common_name' => 'Homo sapiens',
			'tax_id' => '9606'
		),
		'mpu' => array(
			'species' => 'mpu',
			'common_name' => 'Micromonas pusilla strain CCMP1545',
			'tax_id' => '564608'
		),
		'mrcc299' => array(
			'species' => 'mrcc299',
			'common_name' => 'Micromonas sp RCC299',
			'tax_id' => '296587'
		),
		'mus' => array(
			'species' => 'mus',
			'common_name' => 'Mus musculus',
			'tax_id' => '10090'
		),
		'nga' => array(
			'species' => 'nga',
			'common_name' => 'Nannochloropsis gaditana',
			'tax_id' => '72520'
		),
		'osa' => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'tax_id' => '4530'
		),
		'olu' => array(
			'species' => 'olu',
			'common_name' => 'Ostreococcus lucimarinus',
			'tax_id' => '242159'
		),
		'ome' => array(
			'species' => 'ome',
			'common_name' => 'Ostreococcus mediterraneus',
			'tax_id' => '1486918'
		),
		'orcc809' => array(
			'species' => 'orcc809',
			'common_name' => 'Ostreococcus sp RCC809',
			'tax_id' => '385169'
		),
		'ota' => array(
			'species' => 'ota',
			'common_name' => 'Ostreococcus tauri',
			'tax_id' => '70448'
		),
		'pte' => array(
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'tax_id' => '5888'
		),
		'ptri' => array(
			'species' => 'ptri',
			'common_name' => 'Phaeodactylum tricornutum',
			'tax_id' => '2850'
		),
		'ppa' => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'tax_id' => '3218'
		),
		'phs' => array(
			'species' => 'phs',
			'common_name' => 'Phytophtora sojae',
			'tax_id' => '67593'
		),
		'pse3' => array(
			'species' => 'pse3',
			'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
			'tax_id' => '1470871'
		),
		'prcc4223' => array(
			'species' => 'prcc4223',
			'common_name' => 'Picochlorum_RCC4223',
			'tax_id' => '249344'
		),
		'sac' => array(
			'species' => 'sac',
			'common_name' => 'Saccharomyces cerevisiae strain S288C',
			'tax_id' => '4932'
		),
		'scp' => array(
			'species' => 'scp',
			'common_name' => 'Schizosaccharomyces pombe',
			'tax_id' => '4896'
		),
		'tps' => array(
			'species' => 'tps',
			'common_name' => 'Thalassiosira pseudonana',
			'tax_id' => '35128'
		),
		'vca' => array(
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'tax_id' => '3067'
		)
	),
	'gene_family_types_information' => array(
		'HOMFAM' => array(
			'id' => 'HOMFAM',
			'name' => 'Homologous gene family',
			'prefix' => 'HOM',
			'gene_type' => 'coding',
			'method' => '{}',
			'ancestry' => 'homology',
			'parent_id' => ''
		),
		'ORTHOFAM' => array(
			'id' => 'ORTHOFAM',
			'name' => 'Orthologous gene family',
			'prefix' => 'ORTH',
			'gene_type' => 'coding',
			'method' => '{}',
			'ancestry' => 'orthology',
			'parent_id' => 'HOMFAM'
		)
	),
	'gene_family_types_configuration' => array(),
	'data_identifier' => 'AT2G39140',
	'data_type' => 'gene_id',
	'allow_async_use' => true,
	'gene_placeholder' => 'RCC4223.05g04500',
	'gf_placeholder' => 'HOM03P011649',
	'title_for_layout' => 'Pico-PLAZA 3.0 : Interactive Phylogenetics Module'
)
$allowed_extra_sequences_types = array(
	'aa' => 'Protein',
	'dna' => 'DNA'
)
$allowed_editing_methods = array(
	'column' => 'Positions only',
	'row' => 'Genes only',
	'column_row' => 'Positions and Genes',
	'none' => 'No editing'
)
$allowed_tree_programs = array(
	'fasttree' => 'FastTree',
	'iqtree' => 'IQ-TREE (includes model testing)',
	'raxml' => 'RAxML',
	'phyml' => 'PhyML'
)
$allowed_msa_programs = array(
	'muscle' => 'MUSCLE',
	'mafft' => 'MAFFT'
)
$allowed_number_blasthits = array(
	(int) 0 => 'all',
	(int) 1 => (int) 20,
	(int) 2 => (int) 10,
	(int) 3 => (int) 5,
	(int) 4 => (int) 1
)
$similarity_hits_genes = array(
	'AT2G39140' => array(
		'gene_id' => 'AT2G39140',
		'e_value' => '0.0',
		'bit_score' => '838',
		'alignment_length' => '411',
		'identity_percentage' => '100.00',
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P003650'
		)
	),
	'ATR_00161G00240' => array(
		'gene_id' => 'ATR_00161G00240',
		'e_value' => '6e-141',
		'bit_score' => '415',
		'alignment_length' => '339',
		'identity_percentage' => '64.01',
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P003650'
		)
	),
	'OS03G05806' => array(
		'gene_id' => 'OS03G05806',
		'e_value' => '9e-128',
		'bit_score' => '382',
		'alignment_length' => '359',
		'identity_percentage' => '56.82',
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P003650'
		)
	),
	'PP00075G00270' => array(
		'gene_id' => 'PP00075G00270',
		'e_value' => '3e-109',
		'bit_score' => '333',
		'alignment_length' => '296',
		'identity_percentage' => '57.09',
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P003650'
		)
	),
	'MRCC299_08G01570' => array(
		'gene_id' => 'MRCC299_08G01570',
		'e_value' => '2e-69',
		'bit_score' => '226',
		'alignment_length' => '257',
		'identity_percentage' => '47.08',
		'species' => 'mrcc299',
		'common_name' => 'Micromonas sp RCC299',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P003650'
		)
	),
	'OT_06G04650' => array(
		'gene_id' => 'OT_06G04650',
		'e_value' => '9e-65',
		'bit_score' => '219',
		'alignment_length' => '247',
		'identity_percentage' => '44.94',
		'species' => 'ota',
		'common_name' => 'Ostreococcus tauri',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P003650'
		)
	),
	'CV00G42670' => array(
		'gene_id' => 'CV00G42670',
		'e_value' => '2e-64',
		'bit_score' => '214',
		'alignment_length' => '251',
		'identity_percentage' => '46.61',
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P003650'
		)
	),
	'OM_05G04760' => array(
		'gene_id' => 'OM_05G04760',
		'e_value' => '5e-61',
		'bit_score' => '209',
		'alignment_length' => '271',
		'identity_percentage' => '41.70',
		'species' => 'ome',
		'common_name' => 'Ostreococcus mediterraneus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P003650'
		)
	),
	'VC00G99160' => array(
		'gene_id' => 'VC00G99160',
		'e_value' => '3e-60',
		'bit_score' => '206',
		'alignment_length' => '256',
		'identity_percentage' => '47.27',
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P003650'
		)
	),
	'ORCC809_07G00090' => array(
		'gene_id' => 'ORCC809_07G00090',
		'e_value' => '4e-60',
		'bit_score' => '201',
		'alignment_length' => '231',
		'identity_percentage' => '44.59',
		'species' => 'orcc809',
		'common_name' => 'Ostreococcus sp RCC809',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P003650'
		)
	),
	'RCC4223.06g01030' => array(
		'gene_id' => 'RCC4223.06g01030',
		'e_value' => '3e-58',
		'bit_score' => '200',
		'alignment_length' => '254',
		'identity_percentage' => '44.09',
		'species' => 'prcc4223',
		'common_name' => 'Picochlorum_RCC4223',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P003650'
		)
	),
	'PI00G64170' => array(
		'gene_id' => 'PI00G64170',
		'e_value' => '4e-58',
		'bit_score' => '199',
		'alignment_length' => '254',
		'identity_percentage' => '44.49',
		'species' => 'pse3',
		'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P003650'
		)
	),
	'BPRRCC1105_05G04920' => array(
		'gene_id' => 'BPRRCC1105_05G04920',
		'e_value' => '2e-57',
		'bit_score' => '199',
		'alignment_length' => '267',
		'identity_percentage' => '41.95',
		'species' => 'bprrcc1105',
		'common_name' => 'Bathycoccus prasinos',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P003650'
		)
	),
	'MP11G02340' => array(
		'gene_id' => 'MP11G02340',
		'e_value' => '7e-55',
		'bit_score' => '192',
		'alignment_length' => '276',
		'identity_percentage' => '42.39',
		'species' => 'mpu',
		'common_name' => 'Micromonas pusilla strain CCMP1545',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P003650'
		)
	),
	'AC00G69930' => array(
		'gene_id' => 'AC00G69930',
		'e_value' => '9e-54',
		'bit_score' => '186',
		'alignment_length' => '251',
		'identity_percentage' => '46.22',
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P003650'
		)
	),
	'AP00G63980' => array(
		'gene_id' => 'AP00G63980',
		'e_value' => '4e-51',
		'bit_score' => '180',
		'alignment_length' => '266',
		'identity_percentage' => '42.86',
		'species' => 'apr',
		'common_name' => 'Auxenochlorella protothecoides',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P003650'
		)
	),
	'CR02G05760' => array(
		'gene_id' => 'CR02G05760',
		'e_value' => '3e-49',
		'bit_score' => '179',
		'alignment_length' => '188',
		'identity_percentage' => '50.53',
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P003650'
		)
	),
	'OL06G04530' => array(
		'gene_id' => 'OL06G04530',
		'e_value' => '3e-48',
		'bit_score' => '170',
		'alignment_length' => '231',
		'identity_percentage' => '43.72',
		'species' => 'olu',
		'common_name' => 'Ostreococcus lucimarinus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P003650'
		)
	),
	'AT3G43340' => array(
		'gene_id' => 'AT3G43340',
		'e_value' => '3e-40',
		'bit_score' => '144',
		'alignment_length' => '74',
		'identity_percentage' => '91.89',
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P119958'
		)
	),
	'CNC64A_135G00010' => array(
		'gene_id' => 'CNC64A_135G00010',
		'e_value' => '8e-39',
		'bit_score' => '143',
		'alignment_length' => '180',
		'identity_percentage' => '44.44',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P003650'
		)
	),
	'HE0000G59460' => array(
		'gene_id' => 'HE0000G59460',
		'e_value' => '5e-34',
		'bit_score' => '130',
		'alignment_length' => '203',
		'identity_percentage' => '38.92',
		'species' => 'hsp',
		'common_name' => 'Helicosporidium sp. ',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P003650'
		)
	),
	'gsu36410' => array(
		'gene_id' => 'gsu36410',
		'e_value' => '9e-32',
		'bit_score' => '127',
		'alignment_length' => '252',
		'identity_percentage' => '32.94',
		'species' => 'gsu',
		'common_name' => 'Galdieria sulphuraria',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P003650'
		)
	),
	'ES0187G00170' => array(
		'gene_id' => 'ES0187G00170',
		'e_value' => '1e-28',
		'bit_score' => '120',
		'alignment_length' => '252',
		'identity_percentage' => '32.54',
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P003650'
		)
	),
	'phs50290' => array(
		'gene_id' => 'phs50290',
		'e_value' => '7e-27',
		'bit_score' => '113',
		'alignment_length' => '244',
		'identity_percentage' => '33.20',
		'species' => 'phs',
		'common_name' => 'Phytophtora sojae',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P003694'
		)
	),
	'DDB_G0276449' => array(
		'gene_id' => 'DDB_G0276449',
		'e_value' => '5e-25',
		'bit_score' => '108',
		'alignment_length' => '255',
		'identity_percentage' => '32.16',
		'species' => 'ddi',
		'common_name' => 'Dictyostelium discoideum',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P003694'
		)
	),
	'OT_02G05090' => array(
		'gene_id' => 'OT_02G05090',
		'e_value' => '2e-23',
		'bit_score' => '103',
		'alignment_length' => '261',
		'identity_percentage' => '29.89',
		'species' => 'ota',
		'common_name' => 'Ostreococcus tauri',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P007202'
		)
	),
	'phs342110' => array(
		'gene_id' => 'phs342110',
		'e_value' => '2e-23',
		'bit_score' => '102',
		'alignment_length' => '237',
		'identity_percentage' => '32.91',
		'species' => 'phs',
		'common_name' => 'Phytophtora sojae',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P007202'
		)
	),
	'pte573810' => array(
		'gene_id' => 'pte573810',
		'e_value' => '7e-23',
		'bit_score' => '102',
		'alignment_length' => '264',
		'identity_percentage' => '29.92',
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P003694'
		)
	),
	'pte30170' => array(
		'gene_id' => 'pte30170',
		'e_value' => '1e-22',
		'bit_score' => '101',
		'alignment_length' => '263',
		'identity_percentage' => '30.80',
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P003694'
		)
	),
	'ORCC809_02G00170' => array(
		'gene_id' => 'ORCC809_02G00170',
		'e_value' => '7e-22',
		'bit_score' => '98.2',
		'alignment_length' => '263',
		'identity_percentage' => '29.28',
		'species' => 'orcc809',
		'common_name' => 'Ostreococcus sp RCC809',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P007202'
		)
	),
	'OM_04G03740' => array(
		'gene_id' => 'OM_04G03740',
		'e_value' => '4e-21',
		'bit_score' => '97.1',
		'alignment_length' => '278',
		'identity_percentage' => '27.34',
		'species' => 'ome',
		'common_name' => 'Ostreococcus mediterraneus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P007202'
		)
	),
	'ES0012G00560' => array(
		'gene_id' => 'ES0012G00560',
		'e_value' => '3e-20',
		'bit_score' => '96.3',
		'alignment_length' => '249',
		'identity_percentage' => '32.13',
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P003694'
		)
	),
	'OM_17G00310' => array(
		'gene_id' => 'OM_17G00310',
		'e_value' => '4e-20',
		'bit_score' => '95.1',
		'alignment_length' => '263',
		'identity_percentage' => '29.28',
		'species' => 'ome',
		'common_name' => 'Ostreococcus mediterraneus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P007764'
		)
	),
	'OL02G06050' => array(
		'gene_id' => 'OL02G06050',
		'e_value' => '8e-20',
		'bit_score' => '92.0',
		'alignment_length' => '237',
		'identity_percentage' => '31.22',
		'species' => 'olu',
		'common_name' => 'Ostreococcus lucimarinus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P007202'
		)
	),
	'BPRRCC1105_14G02080' => array(
		'gene_id' => 'BPRRCC1105_14G02080',
		'e_value' => '1e-19',
		'bit_score' => '91.7',
		'alignment_length' => '221',
		'identity_percentage' => '34.39',
		'species' => 'bprrcc1105',
		'common_name' => 'Bathycoccus prasinos',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P007202'
		)
	),
	'ORCC809_16G02390' => array(
		'gene_id' => 'ORCC809_16G02390',
		'e_value' => '3e-18',
		'bit_score' => '87.8',
		'alignment_length' => '237',
		'identity_percentage' => '30.80',
		'species' => 'orcc809',
		'common_name' => 'Ostreococcus sp RCC809',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P007764'
		)
	),
	'PTI_04G00780' => array(
		'gene_id' => 'PTI_04G00780',
		'e_value' => '9e-18',
		'bit_score' => '86.7',
		'alignment_length' => '242',
		'identity_percentage' => '31.40',
		'species' => 'ptri',
		'common_name' => 'Phaeodactylum tricornutum',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P007202'
		)
	),
	'PTI_10G03360' => array(
		'gene_id' => 'PTI_10G03360',
		'e_value' => '2e-17',
		'bit_score' => '87.0',
		'alignment_length' => '269',
		'identity_percentage' => '30.48',
		'species' => 'ptri',
		'common_name' => 'Phaeodactylum tricornutum',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P003694'
		)
	),
	'DDB_G0282961' => array(
		'gene_id' => 'DDB_G0282961',
		'e_value' => '3e-16',
		'bit_score' => '84.7',
		'alignment_length' => '253',
		'identity_percentage' => '28.85',
		'species' => 'ddi',
		'common_name' => 'Dictyostelium discoideum',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P009635'
		)
	),
	'MRCC299_10G05220' => array(
		'gene_id' => 'MRCC299_10G05220',
		'e_value' => '3e-16',
		'bit_score' => '81.6',
		'alignment_length' => '262',
		'identity_percentage' => '29.39',
		'species' => 'mrcc299',
		'common_name' => 'Micromonas sp RCC299',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P007764'
		)
	),
	'ccr196000' => array(
		'gene_id' => 'ccr196000',
		'e_value' => '1e-15',
		'bit_score' => '81.6',
		'alignment_length' => '282',
		'identity_percentage' => '26.60',
		'species' => 'ccr',
		'common_name' => 'Chondrus crispus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P003650'
		)
	),
	'OL16G00260' => array(
		'gene_id' => 'OL16G00260',
		'e_value' => '1e-15',
		'bit_score' => '79.7',
		'alignment_length' => '248',
		'identity_percentage' => '27.42',
		'species' => 'olu',
		'common_name' => 'Ostreococcus lucimarinus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P007764'
		)
	),
	'CM11G01820' => array(
		'gene_id' => 'CM11G01820',
		'e_value' => '3e-15',
		'bit_score' => '80.5',
		'alignment_length' => '260',
		'identity_percentage' => '28.46',
		'species' => 'cme',
		'common_name' => 'Cyanidioschyzon merolae',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P007764'
		)
	),
	'OT_17G02350' => array(
		'gene_id' => 'OT_17G02350',
		'e_value' => '3e-15',
		'bit_score' => '79.0',
		'alignment_length' => '234',
		'identity_percentage' => '27.78',
		'species' => 'ota',
		'common_name' => 'Ostreococcus tauri',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P009635'
		)
	),
	'FC007G01990' => array(
		'gene_id' => 'FC007G01990',
		'e_value' => '4e-15',
		'bit_score' => '77.8',
		'alignment_length' => '188',
		'identity_percentage' => '32.45',
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P010423'
		)
	),
	'TP07G01290' => array(
		'gene_id' => 'TP07G01290',
		'e_value' => '6e-15',
		'bit_score' => '79.7',
		'alignment_length' => '234',
		'identity_percentage' => '29.91',
		'species' => 'tps',
		'common_name' => 'Thalassiosira pseudonana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P003694'
		)
	),
	'MP03G07990' => array(
		'gene_id' => 'MP03G07990',
		'e_value' => '1e-14',
		'bit_score' => '77.8',
		'alignment_length' => '251',
		'identity_percentage' => '28.69',
		'species' => 'mpu',
		'common_name' => 'Micromonas pusilla strain CCMP1545',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P009635'
		)
	),
	'MP12G02020' => array(
		'gene_id' => 'MP12G02020',
		'e_value' => '3e-14',
		'bit_score' => '77.8',
		'alignment_length' => '248',
		'identity_percentage' => '28.63',
		'species' => 'mpu',
		'common_name' => 'Micromonas pusilla strain CCMP1545',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P007202'
		)
	),
	'TP01G02830' => array(
		'gene_id' => 'TP01G02830',
		'e_value' => '1e-13',
		'bit_score' => '75.9',
		'alignment_length' => '286',
		'identity_percentage' => '28.32',
		'species' => 'tps',
		'common_name' => 'Thalassiosira pseudonana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P010423'
		)
	),
	'ccr35300' => array(
		'gene_id' => 'ccr35300',
		'e_value' => '3e-13',
		'bit_score' => '73.6',
		'alignment_length' => '223',
		'identity_percentage' => '28.25',
		'species' => 'ccr',
		'common_name' => 'Chondrus crispus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P010423'
		)
	),
	'VC00G58980' => array(
		'gene_id' => 'VC00G58980',
		'e_value' => '3e-13',
		'bit_score' => '75.1',
		'alignment_length' => '237',
		'identity_percentage' => '27.00',
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P009635'
		)
	),
	'FC001G18500' => array(
		'gene_id' => 'FC001G18500',
		'e_value' => '3e-13',
		'bit_score' => '72.8',
		'alignment_length' => '257',
		'identity_percentage' => '29.18',
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P019536'
		)
	),
	'FC113G00030' => array(
		'gene_id' => 'FC113G00030',
		'e_value' => '6e-13',
		'bit_score' => '73.2',
		'alignment_length' => '264',
		'identity_percentage' => '27.65',
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'gf' => array(
			'HOMFAM' => 'HOM03P004871',
			'ORTHOFAM' => 'ORTHO03P003694'
		)
	),
	'OT_17G00250' => array(
		'gene_id' => 'OT_17G00250',
		'e_value' => '6e-13',
		'bit_score' => '73.9',
		'alignment_length' => '259',
		'identity_percentage' => '26.25',
		'species' => 'ota',
		'common_name' => 'Ostreococcus tauri',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P007764'
		)
	),
	'emh407840' => array(
		'gene_id' => 'emh407840',
		'e_value' => '8e-13',
		'bit_score' => '72.0',
		'alignment_length' => '128',
		'identity_percentage' => '35.16',
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'gf' => array(
			'HOMFAM' => 'HOM03P033232',
			'ORTHOFAM' => 'ORTHO03P043977'
		)
	),
	'emh619950' => array(
		'gene_id' => 'emh619950',
		'e_value' => '1e-12',
		'bit_score' => '70.5',
		'alignment_length' => '227',
		'identity_percentage' => '29.07',
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P010423'
		)
	),
	'emh123680' => array(
		'gene_id' => 'emh123680',
		'e_value' => '1e-12',
		'bit_score' => '70.5',
		'alignment_length' => '227',
		'identity_percentage' => '29.07',
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P010423'
		)
	),
	'OL16G02410' => array(
		'gene_id' => 'OL16G02410',
		'e_value' => '1e-12',
		'bit_score' => '71.6',
		'alignment_length' => '234',
		'identity_percentage' => '26.07',
		'species' => 'olu',
		'common_name' => 'Ostreococcus lucimarinus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P009635'
		)
	),
	'ORCC809_16G00280' => array(
		'gene_id' => 'ORCC809_16G00280',
		'e_value' => '2e-12',
		'bit_score' => '71.2',
		'alignment_length' => '236',
		'identity_percentage' => '27.54',
		'species' => 'orcc809',
		'common_name' => 'Ostreococcus sp RCC809',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P009635'
		)
	),
	'ES0004G00400' => array(
		'gene_id' => 'ES0004G00400',
		'e_value' => '6e-12',
		'bit_score' => '70.9',
		'alignment_length' => '260',
		'identity_percentage' => '30.38',
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P010423'
		)
	),
	'FC031G01010' => array(
		'gene_id' => 'FC031G01010',
		'e_value' => '7e-12',
		'bit_score' => '71.6',
		'alignment_length' => '265',
		'identity_percentage' => '27.55',
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'gf' => array(
			'HOMFAM' => 'HOM03P004871',
			'ORTHOFAM' => 'ORTHO03P003694'
		)
	),
	'MRCC299_01G01190' => array(
		'gene_id' => 'MRCC299_01G01190',
		'e_value' => '1e-11',
		'bit_score' => '69.3',
		'alignment_length' => '240',
		'identity_percentage' => '29.58',
		'species' => 'mrcc299',
		'common_name' => 'Micromonas sp RCC299',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P007202'
		)
	),
	'AA0118G00040' => array(
		'gene_id' => 'AA0118G00040',
		'e_value' => '7e-11',
		'bit_score' => '66.2',
		'alignment_length' => '252',
		'identity_percentage' => '29.76',
		'species' => 'aan',
		'common_name' => 'Aureococcus anophagefferens',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P007764'
		)
	),
	'emh571240' => array(
		'gene_id' => 'emh571240',
		'e_value' => '8e-11',
		'bit_score' => '65.1',
		'alignment_length' => '217',
		'identity_percentage' => '25.35',
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P019536'
		)
	),
	'AA0003G03110' => array(
		'gene_id' => 'AA0003G03110',
		'e_value' => '8e-11',
		'bit_score' => '66.2',
		'alignment_length' => '252',
		'identity_percentage' => '29.76',
		'species' => 'aan',
		'common_name' => 'Aureococcus anophagefferens',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P007764'
		)
	),
	'emh161120' => array(
		'gene_id' => 'emh161120',
		'e_value' => '1e-10',
		'bit_score' => '64.7',
		'alignment_length' => '208',
		'identity_percentage' => '25.96',
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'gf' => array(
			'HOMFAM' => 'HOM03P033231',
			'ORTHOFAM' => 'ORTHO03P052225'
		)
	),
	'emh471710' => array(
		'gene_id' => 'emh471710',
		'e_value' => '1e-10',
		'bit_score' => '64.7',
		'alignment_length' => '215',
		'identity_percentage' => '25.12',
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'gf' => array(
			'HOMFAM' => 'HOM03P033231',
			'ORTHOFAM' => 'ORTHO03P052225'
		)
	),
	'PTI_16G02370' => array(
		'gene_id' => 'PTI_16G02370',
		'e_value' => '2e-10',
		'bit_score' => '65.9',
		'alignment_length' => '330',
		'identity_percentage' => '26.06',
		'species' => 'ptri',
		'common_name' => 'Phaeodactylum tricornutum',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P010423'
		)
	),
	'FC001G03480' => array(
		'gene_id' => 'FC001G03480',
		'e_value' => '8e-10',
		'bit_score' => '64.3',
		'alignment_length' => '268',
		'identity_percentage' => '29.85',
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P007202'
		)
	),
	'OM_17G02630' => array(
		'gene_id' => 'OM_17G02630',
		'e_value' => '9e-10',
		'bit_score' => '63.2',
		'alignment_length' => '185',
		'identity_percentage' => '29.19',
		'species' => 'ome',
		'common_name' => 'Ostreococcus mediterraneus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P009635'
		)
	),
	'MP12G00880' => array(
		'gene_id' => 'MP12G00880',
		'e_value' => '1e-09',
		'bit_score' => '62.0',
		'alignment_length' => '188',
		'identity_percentage' => '26.60',
		'species' => 'mpu',
		'common_name' => 'Micromonas pusilla strain CCMP1545',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P019536'
		)
	),
	'FC005G03840' => array(
		'gene_id' => 'FC005G03840',
		'e_value' => '2e-09',
		'bit_score' => '62.4',
		'alignment_length' => '185',
		'identity_percentage' => '29.19',
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P007764'
		)
	),
	'BPRRCC1105_12G00130' => array(
		'gene_id' => 'BPRRCC1105_12G00130',
		'e_value' => '5e-09',
		'bit_score' => '61.2',
		'alignment_length' => '204',
		'identity_percentage' => '27.45',
		'species' => 'bprrcc1105',
		'common_name' => 'Bathycoccus prasinos',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P009635'
		)
	),
	'Naga_100056g17' => array(
		'gene_id' => 'Naga_100056g17',
		'e_value' => '5e-09',
		'bit_score' => '61.6',
		'alignment_length' => '283',
		'identity_percentage' => '28.62',
		'species' => 'nga',
		'common_name' => 'Nannochloropsis gaditana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P010423'
		)
	),
	'emh95350' => array(
		'gene_id' => 'emh95350',
		'e_value' => '1e-08',
		'bit_score' => '58.2',
		'alignment_length' => '164',
		'identity_percentage' => '26.22',
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P019536'
		)
	),
	'emh85510' => array(
		'gene_id' => 'emh85510',
		'e_value' => '1e-08',
		'bit_score' => '60.5',
		'alignment_length' => '254',
		'identity_percentage' => '26.77',
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P007202'
		)
	),
	'CNC64A_011G01140' => array(
		'gene_id' => 'CNC64A_011G01140',
		'e_value' => '1e-08',
		'bit_score' => '56.2',
		'alignment_length' => '58',
		'identity_percentage' => '46.55',
		'species' => 'cnc64a',
		'common_name' => 'Chlorella sp NC64A',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P082200'
		)
	),
	'PTI_13G01380' => array(
		'gene_id' => 'PTI_13G01380',
		'e_value' => '3e-08',
		'bit_score' => '58.9',
		'alignment_length' => '275',
		'identity_percentage' => '25.45',
		'species' => 'ptri',
		'common_name' => 'Phaeodactylum tricornutum',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P007764'
		)
	),
	'CR07G02500' => array(
		'gene_id' => 'CR07G02500',
		'e_value' => '1e-06',
		'bit_score' => '54.7',
		'alignment_length' => '230',
		'identity_percentage' => '26.52',
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'gf' => array(
			'HOMFAM' => 'HOM03P000691',
			'ORTHOFAM' => 'ORTHO03P009635'
		)
	)
)
$similarity_hits_species = array(
	'ath' => array(
		(int) 0 => 'AT2G39140',
		(int) 1 => 'AT3G43340'
	),
	'atr' => array(
		(int) 0 => 'ATR_00161G00240'
	),
	'osa' => array(
		(int) 0 => 'OS03G05806'
	),
	'ppa' => array(
		(int) 0 => 'PP00075G00270'
	),
	'mrcc299' => array(
		(int) 0 => 'MRCC299_08G01570',
		(int) 1 => 'MRCC299_10G05220',
		(int) 2 => 'MRCC299_01G01190'
	),
	'ota' => array(
		(int) 0 => 'OT_06G04650',
		(int) 1 => 'OT_02G05090',
		(int) 2 => 'OT_17G02350',
		(int) 3 => 'OT_17G00250'
	),
	'cvu' => array(
		(int) 0 => 'CV00G42670'
	),
	'ome' => array(
		(int) 0 => 'OM_05G04760',
		(int) 1 => 'OM_04G03740',
		(int) 2 => 'OM_17G00310',
		(int) 3 => 'OM_17G02630'
	),
	'vca' => array(
		(int) 0 => 'VC00G99160',
		(int) 1 => 'VC00G58980'
	),
	'orcc809' => array(
		(int) 0 => 'ORCC809_07G00090',
		(int) 1 => 'ORCC809_02G00170',
		(int) 2 => 'ORCC809_16G02390',
		(int) 3 => 'ORCC809_16G00280'
	),
	'prcc4223' => array(
		(int) 0 => 'RCC4223.06g01030'
	),
	'pse3' => array(
		(int) 0 => 'PI00G64170'
	),
	'bprrcc1105' => array(
		(int) 0 => 'BPRRCC1105_05G04920',
		(int) 1 => 'BPRRCC1105_14G02080',
		(int) 2 => 'BPRRCC1105_12G00130'
	),
	'mpu' => array(
		(int) 0 => 'MP11G02340',
		(int) 1 => 'MP03G07990',
		(int) 2 => 'MP12G02020',
		(int) 3 => 'MP12G00880'
	),
	'acg' => array(
		(int) 0 => 'AC00G69930'
	),
	'apr' => array(
		(int) 0 => 'AP00G63980'
	),
	'cre' => array(
		(int) 0 => 'CR02G05760',
		(int) 1 => 'CR07G02500'
	),
	'olu' => array(
		(int) 0 => 'OL06G04530',
		(int) 1 => 'OL02G06050',
		(int) 2 => 'OL16G00260',
		(int) 3 => 'OL16G02410'
	),
	'hsp' => array(
		(int) 0 => 'HE0000G59460'
	),
	'gsu' => array(
		(int) 0 => 'gsu36410'
	),
	'esi' => array(
		(int) 0 => 'ES0187G00170',
		(int) 1 => 'ES0012G00560',
		(int) 2 => 'ES0004G00400'
	),
	'phs' => array(
		(int) 0 => 'phs50290',
		(int) 1 => 'phs342110'
	),
	'ddi' => array(
		(int) 0 => 'DDB_G0276449',
		(int) 1 => 'DDB_G0282961'
	),
	'pte' => array(
		(int) 0 => 'pte573810',
		(int) 1 => 'pte30170'
	),
	'ptri' => array(
		(int) 0 => 'PTI_04G00780',
		(int) 1 => 'PTI_10G03360',
		(int) 2 => 'PTI_16G02370',
		(int) 3 => 'PTI_13G01380'
	),
	'ccr' => array(
		(int) 0 => 'ccr196000',
		(int) 1 => 'ccr35300'
	),
	'cme' => array(
		(int) 0 => 'CM11G01820'
	),
	'fcy' => array(
		(int) 0 => 'FC007G01990',
		(int) 1 => 'FC001G18500',
		(int) 2 => 'FC113G00030',
		(int) 3 => 'FC031G01010',
		(int) 4 => 'FC001G03480',
		(int) 5 => 'FC005G03840'
	),
	'tps' => array(
		(int) 0 => 'TP07G01290',
		(int) 1 => 'TP01G02830'
	),
	'emh' => array(
		(int) 0 => 'emh407840',
		(int) 1 => 'emh619950',
		(int) 2 => 'emh123680',
		(int) 3 => 'emh571240',
		(int) 4 => 'emh161120',
		(int) 5 => 'emh471710',
		(int) 6 => 'emh95350',
		(int) 7 => 'emh85510'
	),
	'aan' => array(
		(int) 0 => 'AA0118G00040',
		(int) 1 => 'AA0003G03110'
	),
	'nga' => array(
		(int) 0 => 'Naga_100056g17'
	),
	'cnc64a' => array(
		(int) 0 => 'CNC64A_011G01140'
	)
)
$gene_id = 'AT2G39140'
$all_species_index = array(
	(int) 0 => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333'
	),
	(int) 1 => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702'
	),
	(int) 2 => array(
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'tax_id' => '763042'
	),
	(int) 3 => array(
		'species' => 'aan',
		'common_name' => 'Aureococcus anophagefferens',
		'tax_id' => '44056'
	),
	(int) 4 => array(
		'species' => 'apr',
		'common_name' => 'Auxenochlorella protothecoides',
		'tax_id' => '3075'
	),
	(int) 5 => array(
		'species' => 'bprrcc1105',
		'common_name' => 'Bathycoccus prasinos',
		'tax_id' => '41875'
	),
	(int) 6 => array(
		'species' => 'cel',
		'common_name' => 'Caenorhabditis elegans',
		'tax_id' => '6239'
	),
	(int) 7 => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055'
	),
	(int) 8 => array(
		'species' => 'cnc64a',
		'common_name' => 'Chlorella sp NC64A',
		'tax_id' => '310507'
	),
	(int) 9 => array(
		'species' => 'ccr',
		'common_name' => 'Chondrus crispus',
		'tax_id' => '2769'
	),
	(int) 10 => array(
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'tax_id' => '574566'
	),
	(int) 11 => array(
		'species' => 'cme',
		'common_name' => 'Cyanidioschyzon merolae',
		'tax_id' => '45157'
	),
	(int) 12 => array(
		'species' => 'ddi',
		'common_name' => 'Dictyostelium discoideum',
		'tax_id' => '44689'
	),
	(int) 13 => array(
		'species' => 'drm',
		'common_name' => 'Drosophila melanogaster',
		'tax_id' => '7227'
	),
	(int) 14 => array(
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'tax_id' => '2880'
	),
	(int) 15 => array(
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'tax_id' => '280463'
	),
	(int) 16 => array(
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'tax_id' => '186039'
	),
	(int) 17 => array(
		'species' => 'gsu',
		'common_name' => 'Galdieria sulphuraria',
		'tax_id' => '130081'
	),
	(int) 18 => array(
		'species' => 'hsp',
		'common_name' => 'Helicosporidium sp. ',
		'tax_id' => '145475'
	),
	(int) 19 => array(
		'species' => 'hom',
		'common_name' => 'Homo sapiens',
		'tax_id' => '9606'
	),
	(int) 20 => array(
		'species' => 'mpu',
		'common_name' => 'Micromonas pusilla strain CCMP1545',
		'tax_id' => '564608'
	),
	(int) 21 => array(
		'species' => 'mrcc299',
		'common_name' => 'Micromonas sp RCC299',
		'tax_id' => '296587'
	),
	(int) 22 => array(
		'species' => 'mus',
		'common_name' => 'Mus musculus',
		'tax_id' => '10090'
	),
	(int) 23 => array(
		'species' => 'nga',
		'common_name' => 'Nannochloropsis gaditana',
		'tax_id' => '72520'
	),
	(int) 24 => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'tax_id' => '4530'
	),
	(int) 25 => array(
		'species' => 'olu',
		'common_name' => 'Ostreococcus lucimarinus',
		'tax_id' => '242159'
	),
	(int) 26 => array(
		'species' => 'ome',
		'common_name' => 'Ostreococcus mediterraneus',
		'tax_id' => '1486918'
	),
	(int) 27 => array(
		'species' => 'orcc809',
		'common_name' => 'Ostreococcus sp RCC809',
		'tax_id' => '385169'
	),
	(int) 28 => array(
		'species' => 'ota',
		'common_name' => 'Ostreococcus tauri',
		'tax_id' => '70448'
	),
	(int) 29 => array(
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'tax_id' => '5888'
	),
	(int) 30 => array(
		'species' => 'ptri',
		'common_name' => 'Phaeodactylum tricornutum',
		'tax_id' => '2850'
	),
	(int) 31 => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'tax_id' => '3218'
	),
	(int) 32 => array(
		'species' => 'phs',
		'common_name' => 'Phytophtora sojae',
		'tax_id' => '67593'
	),
	(int) 33 => array(
		'species' => 'pse3',
		'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
		'tax_id' => '1470871'
	),
	(int) 34 => array(
		'species' => 'prcc4223',
		'common_name' => 'Picochlorum_RCC4223',
		'tax_id' => '249344'
	),
	(int) 35 => array(
		'species' => 'sac',
		'common_name' => 'Saccharomyces cerevisiae strain S288C',
		'tax_id' => '4932'
	),
	(int) 36 => array(
		'species' => 'scp',
		'common_name' => 'Schizosaccharomyces pombe',
		'tax_id' => '4896'
	),
	(int) 37 => array(
		'species' => 'tps',
		'common_name' => 'Thalassiosira pseudonana',
		'tax_id' => '35128'
	),
	(int) 38 => array(
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'tax_id' => '3067'
	)
)
$all_species = array(
	'atr' => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333'
	),
	'ath' => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702'
	),
	'acg' => array(
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'tax_id' => '763042'
	),
	'aan' => array(
		'species' => 'aan',
		'common_name' => 'Aureococcus anophagefferens',
		'tax_id' => '44056'
	),
	'apr' => array(
		'species' => 'apr',
		'common_name' => 'Auxenochlorella protothecoides',
		'tax_id' => '3075'
	),
	'bprrcc1105' => array(
		'species' => 'bprrcc1105',
		'common_name' => 'Bathycoccus prasinos',
		'tax_id' => '41875'
	),
	'cel' => array(
		'species' => 'cel',
		'common_name' => 'Caenorhabditis elegans',
		'tax_id' => '6239'
	),
	'cre' => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055'
	),
	'cnc64a' => array(
		'species' => 'cnc64a',
		'common_name' => 'Chlorella sp NC64A',
		'tax_id' => '310507'
	),
	'ccr' => array(
		'species' => 'ccr',
		'common_name' => 'Chondrus crispus',
		'tax_id' => '2769'
	),
	'cvu' => array(
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'tax_id' => '574566'
	),
	'cme' => array(
		'species' => 'cme',
		'common_name' => 'Cyanidioschyzon merolae',
		'tax_id' => '45157'
	),
	'ddi' => array(
		'species' => 'ddi',
		'common_name' => 'Dictyostelium discoideum',
		'tax_id' => '44689'
	),
	'drm' => array(
		'species' => 'drm',
		'common_name' => 'Drosophila melanogaster',
		'tax_id' => '7227'
	),
	'esi' => array(
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'tax_id' => '2880'
	),
	'emh' => array(
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'tax_id' => '280463'
	),
	'fcy' => array(
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'tax_id' => '186039'
	),
	'gsu' => array(
		'species' => 'gsu',
		'common_name' => 'Galdieria sulphuraria',
		'tax_id' => '130081'
	),
	'hsp' => array(
		'species' => 'hsp',
		'common_name' => 'Helicosporidium sp. ',
		'tax_id' => '145475'
	),
	'hom' => array(
		'species' => 'hom',
		'common_name' => 'Homo sapiens',
		'tax_id' => '9606'
	),
	'mpu' => array(
		'species' => 'mpu',
		'common_name' => 'Micromonas pusilla strain CCMP1545',
		'tax_id' => '564608'
	),
	'mrcc299' => array(
		'species' => 'mrcc299',
		'common_name' => 'Micromonas sp RCC299',
		'tax_id' => '296587'
	),
	'mus' => array(
		'species' => 'mus',
		'common_name' => 'Mus musculus',
		'tax_id' => '10090'
	),
	'nga' => array(
		'species' => 'nga',
		'common_name' => 'Nannochloropsis gaditana',
		'tax_id' => '72520'
	),
	'osa' => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'tax_id' => '4530'
	),
	'olu' => array(
		'species' => 'olu',
		'common_name' => 'Ostreococcus lucimarinus',
		'tax_id' => '242159'
	),
	'ome' => array(
		'species' => 'ome',
		'common_name' => 'Ostreococcus mediterraneus',
		'tax_id' => '1486918'
	),
	'orcc809' => array(
		'species' => 'orcc809',
		'common_name' => 'Ostreococcus sp RCC809',
		'tax_id' => '385169'
	),
	'ota' => array(
		'species' => 'ota',
		'common_name' => 'Ostreococcus tauri',
		'tax_id' => '70448'
	),
	'pte' => array(
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'tax_id' => '5888'
	),
	'ptri' => array(
		'species' => 'ptri',
		'common_name' => 'Phaeodactylum tricornutum',
		'tax_id' => '2850'
	),
	'ppa' => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'tax_id' => '3218'
	),
	'phs' => array(
		'species' => 'phs',
		'common_name' => 'Phytophtora sojae',
		'tax_id' => '67593'
	),
	'pse3' => array(
		'species' => 'pse3',
		'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
		'tax_id' => '1470871'
	),
	'prcc4223' => array(
		'species' => 'prcc4223',
		'common_name' => 'Picochlorum_RCC4223',
		'tax_id' => '249344'
	),
	'sac' => array(
		'species' => 'sac',
		'common_name' => 'Saccharomyces cerevisiae strain S288C',
		'tax_id' => '4932'
	),
	'scp' => array(
		'species' => 'scp',
		'common_name' => 'Schizosaccharomyces pombe',
		'tax_id' => '4896'
	),
	'tps' => array(
		'species' => 'tps',
		'common_name' => 'Thalassiosira pseudonana',
		'tax_id' => '35128'
	),
	'vca' => array(
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'tax_id' => '3067'
	)
)
$gene_family_types_information = array(
	'HOMFAM' => array(
		'id' => 'HOMFAM',
		'name' => 'Homologous gene family',
		'prefix' => 'HOM',
		'gene_type' => 'coding',
		'method' => '{}',
		'ancestry' => 'homology',
		'parent_id' => ''
	),
	'ORTHOFAM' => array(
		'id' => 'ORTHOFAM',
		'name' => 'Orthologous gene family',
		'prefix' => 'ORTH',
		'gene_type' => 'coding',
		'method' => '{}',
		'ancestry' => 'orthology',
		'parent_id' => 'HOMFAM'
	)
)
$gene_family_types_configuration = array()
$data_identifier = 'AT2G39140'
$data_type = 'gene_id'
$allow_async_use = true
$gene_placeholder = 'RCC4223.05g04500'
$gf_placeholder = 'HOM03P011649'
$title_for_layout = 'Pico-PLAZA 3.0 : Interactive Phylogenetics Module'
$collapse1 = ''
$collapse2 = 'collapse in'
$similarity_hit = array(
	'gene_id' => 'CNC64A_135G00010',
	'e_value' => '8e-39',
	'bit_score' => '143',
	'alignment_length' => '180',
	'identity_percentage' => '44.44',
	'gf' => array(
		'HOMFAM' => 'HOM03P000691',
		'ORTHOFAM' => 'ORTHO03P003650'
	)
)
$checked = null
$similarity_hit_gene = 'CNC64A_135G00010'
include - APP/View/Analysis/custom_tree_creation.ctp, line 169
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::render() - CORE/Cake/View/View.php, line 473
Controller::render() - CORE/Cake/Controller/Controller.php, line 963
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167
[main] - APP/webroot/index.php, line 146

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
AT2G39140	Arabidopsis thaliana	0.0	838	411	100.00
ATR_00161G00240	Amborella trichopoda	6e-141	415	339	64.01
OS03G05806	Oryza sativa	9e-128	382	359	56.82
PP00075G00270	Physcomitrella patens	3e-109	333	296	57.09
MRCC299_08G01570	Micromonas sp RCC299	2e-69	226	257	47.08
OT_06G04650	Ostreococcus tauri	9e-65	219	247	44.94
CV00G42670	Coccomyxa subellipsoidea C-169	2e-64	214	251	46.61
OM_05G04760	Ostreococcus mediterraneus	5e-61	209	271	41.70
VC00G99160	Volvox carteri	3e-60	206	256	47.27
ORCC809_07G00090	Ostreococcus sp RCC809	4e-60	201	231	44.59
RCC4223.06g01030	Picochlorum_RCC4223	3e-58	200	254	44.09
PI00G64170	Picochlorum sp. SENEW3 (SE3)	4e-58	199	254	44.49
BPRRCC1105_05G04920	Bathycoccus prasinos	2e-57	199	267	41.95
MP11G02340	Micromonas pusilla strain CCMP1545	7e-55	192	276	42.39
AC00G69930	Asterochloris sp. Cgr-DA1pho v2.0	9e-54	186	251	46.22
AP00G63980	Auxenochlorella protothecoides	4e-51	180	266	42.86
CR02G05760	Chlamydomonas reinhardtii	3e-49	179	188	50.53
OL06G04530	Ostreococcus lucimarinus	3e-48	170	231	43.72
AT3G43340	Arabidopsis thaliana	3e-40	144	74	91.89
CNC64A_135G00010		8e-39	143	180	44.44
HE0000G59460	Helicosporidium sp.	5e-34	130	203	38.92
gsu36410	Galdieria sulphuraria	9e-32	127	252	32.94
ES0187G00170	Ectocarpus siliculosus	1e-28	120	252	32.54
phs50290	Phytophtora sojae	7e-27	113	244	33.20
DDB_G0276449	Dictyostelium discoideum	5e-25	108	255	32.16
OT_02G05090	Ostreococcus tauri	2e-23	103	261	29.89
phs342110	Phytophtora sojae	2e-23	102	237	32.91
pte573810	Paramecium tetraurelia	7e-23	102	264	29.92
pte30170	Paramecium tetraurelia	1e-22	101	263	30.80
ORCC809_02G00170	Ostreococcus sp RCC809	7e-22	98.2	263	29.28
OM_04G03740	Ostreococcus mediterraneus	4e-21	97.1	278	27.34
ES0012G00560	Ectocarpus siliculosus	3e-20	96.3	249	32.13
OM_17G00310	Ostreococcus mediterraneus	4e-20	95.1	263	29.28
OL02G06050	Ostreococcus lucimarinus	8e-20	92.0	237	31.22
BPRRCC1105_14G02080	Bathycoccus prasinos	1e-19	91.7	221	34.39
ORCC809_16G02390	Ostreococcus sp RCC809	3e-18	87.8	237	30.80
PTI_04G00780	Phaeodactylum tricornutum	9e-18	86.7	242	31.40
PTI_10G03360	Phaeodactylum tricornutum	2e-17	87.0	269	30.48
DDB_G0282961	Dictyostelium discoideum	3e-16	84.7	253	28.85
MRCC299_10G05220	Micromonas sp RCC299	3e-16	81.6	262	29.39
ccr196000	Chondrus crispus	1e-15	81.6	282	26.60
OL16G00260	Ostreococcus lucimarinus	1e-15	79.7	248	27.42
CM11G01820	Cyanidioschyzon merolae	3e-15	80.5	260	28.46
OT_17G02350	Ostreococcus tauri	3e-15	79.0	234	27.78
FC007G01990	Fragilariopsis cylindrus	4e-15	77.8	188	32.45
TP07G01290	Thalassiosira pseudonana	6e-15	79.7	234	29.91
MP03G07990	Micromonas pusilla strain CCMP1545	1e-14	77.8	251	28.69
MP12G02020	Micromonas pusilla strain CCMP1545	3e-14	77.8	248	28.63
TP01G02830	Thalassiosira pseudonana	1e-13	75.9	286	28.32
ccr35300	Chondrus crispus	3e-13	73.6	223	28.25
VC00G58980	Volvox carteri	3e-13	75.1	237	27.00
FC001G18500	Fragilariopsis cylindrus	3e-13	72.8	257	29.18
FC113G00030	Fragilariopsis cylindrus	6e-13	73.2	264	27.65
OT_17G00250	Ostreococcus tauri	6e-13	73.9	259	26.25
emh407840	Emiliania huxleyi	8e-13	72.0	128	35.16
emh619950	Emiliania huxleyi	1e-12	70.5	227	29.07
emh123680	Emiliania huxleyi	1e-12	70.5	227	29.07
OL16G02410	Ostreococcus lucimarinus	1e-12	71.6	234	26.07
ORCC809_16G00280	Ostreococcus sp RCC809	2e-12	71.2	236	27.54
ES0004G00400	Ectocarpus siliculosus	6e-12	70.9	260	30.38
FC031G01010	Fragilariopsis cylindrus	7e-12	71.6	265	27.55
MRCC299_01G01190	Micromonas sp RCC299	1e-11	69.3	240	29.58
AA0118G00040	Aureococcus anophagefferens	7e-11	66.2	252	29.76
emh571240	Emiliania huxleyi	8e-11	65.1	217	25.35
AA0003G03110	Aureococcus anophagefferens	8e-11	66.2	252	29.76
emh161120	Emiliania huxleyi	1e-10	64.7	208	25.96
emh471710	Emiliania huxleyi	1e-10	64.7	215	25.12
PTI_16G02370	Phaeodactylum tricornutum	2e-10	65.9	330	26.06
FC001G03480	Fragilariopsis cylindrus	8e-10	64.3	268	29.85
OM_17G02630	Ostreococcus mediterraneus	9e-10	63.2	185	29.19
MP12G00880	Micromonas pusilla strain CCMP1545	1e-09	62.0	188	26.60
FC005G03840	Fragilariopsis cylindrus	2e-09	62.4	185	29.19
BPRRCC1105_12G00130	Bathycoccus prasinos	5e-09	61.2	204	27.45
Naga_100056g17	Nannochloropsis gaditana	5e-09	61.6	283	28.62
emh95350	Emiliania huxleyi	1e-08	58.2	164	26.22
emh85510	Emiliania huxleyi	1e-08	60.5	254	26.77
CNC64A_011G01140	Chlorella sp NC64A	1e-08	56.2	58	46.55
PTI_13G01380	Phaeodactylum tricornutum	3e-08	58.9	275	25.45
CR07G02500	Chlamydomonas reinhardtii	1e-06	54.7	230	26.52

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
Edit MSA alignment