Pico-PLAZA 3.0 : Interactive Phylogenetics Module

Interactive Phylogenetics Module

Gene Id: AT2G04240

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Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
AT2G04240	Arabidopsis thaliana	2e-114	328	163	100.00
ATR_00061G01820	Amborella trichopoda	8e-35	125	145	44.83
ATR_00049G02620	Amborella trichopoda	1e-27	106	149	40.94
OS08G38460	Oryza sativa	2e-23	95.9	149	34.90
OS09G30160	Oryza sativa	7e-23	94.4	150	33.33
AT3G61460	Arabidopsis thaliana	4e-18	82.0	158	29.11
ATR_00001G03860	Amborella trichopoda	3e-16	76.3	81	48.15
AT1G67856	Arabidopsis thaliana	3e-15	73.2	154	33.77
AT2G01150	Arabidopsis thaliana	3e-15	73.2	63	49.21
ATR_00025G03320	Amborella trichopoda	8e-14	69.7	138	31.16
AT1G63840	Arabidopsis thaliana	2e-13	68.6	155	29.03
AT1G15100	Arabidopsis thaliana	4e-13	67.4	61	47.54
AT5G41400	Arabidopsis thaliana	5e-13	67.4	81	39.51
OS02G45710	Oryza sativa	7e-12	64.7	87	36.78
AA0014G01990	Aureococcus anophagefferens	1e-11	61.6	52	46.15
OS02G45780	Oryza sativa	5e-11	61.6	82	36.59
OS04G49000	Oryza sativa	1e-10	60.8	82	36.59
PP00185G00660	Physcomitrella patens	1e-10	62.8	145	28.28
AT4G00305	Arabidopsis thaliana	1e-10	59.7	66	39.39
AT4G11370	Arabidopsis thaliana	2e-10	59.7	63	44.44
emh142560	Emiliania huxleyi	3e-10	58.9	52	42.31
AT4G11360	Arabidopsis thaliana	1e-09	57.8	63	47.62
AT1G12760	Arabidopsis thaliana	1e-09	59.7	48	50.00
CM13G00120	Cyanidioschyzon merolae	2e-09	59.3	80	31.25
ATR_00044G02360	Amborella trichopoda	2e-09	57.0	147	23.81
ccr102120	Chondrus crispus	3e-09	59.3	71	33.80
AT3G43430	Arabidopsis thaliana	3e-09	56.2	65	38.46
ATR_00044G02210	Amborella trichopoda	3e-09	56.6	61	40.98
AT1G63170	Arabidopsis thaliana	6e-09	57.8	50	46.00
AT3G05200	Arabidopsis thaliana	6e-09	57.8	143	26.57
ATR_00001G04900	Amborella trichopoda	7e-09	55.1	82	31.71
OS03G10890	Oryza sativa	8e-09	56.6	58	44.83
WBGene00012194	Caenorhabditis elegans	9e-09	57.4	49	44.90
OS06G34620	Oryza sativa	1e-08	55.1	67	37.31
pte578270	Paramecium tetraurelia	1e-08	57.0	52	46.15
pte213090	Paramecium tetraurelia	1e-08	56.6	53	50.94
ES0339G00010	Ectocarpus siliculosus	1e-08	53.9	65	32.31
OS03G05570	Oryza sativa	1e-08	56.2	63	38.10
AT3G60220	Arabidopsis thaliana	2e-08	56.2	94	34.04
OS01G49770	Oryza sativa	2e-08	54.7	61	32.79
OS04G49160	Oryza sativa	2e-08	53.9	48	43.75
OS09G36500	Oryza sativa	2e-08	54.3	49	40.82
ES0098G00250	Ectocarpus siliculosus	2e-08	56.2	50	42.00
OS04G16970	Oryza sativa	3e-08	53.1	50	44.00
OS02G45240	Oryza sativa	3e-08	55.5	46	47.83
AT1G24580	Arabidopsis thaliana	3e-08	52.8	136	32.35
OS01G16120	Oryza sativa	3e-08	54.3	52	40.38
AA0005G01700	Aureococcus anophagefferens	3e-08	55.5	68	38.24
OS04G48050	Oryza sativa	4e-08	55.1	46	47.83
AT5G20885	Arabidopsis thaliana	4e-08	53.5	73	32.88
OS06G34470	Oryza sativa	4e-08	53.1	50	42.00
OM_02G04480	Ostreococcus mediterraneus	4e-08	53.9	53	41.51
OS07G48680	Oryza sativa	4e-08	53.5	57	42.11
AT1G72200	Arabidopsis thaliana	5e-08	55.1	71	40.85
OS02G35144	Oryza sativa	5e-08	53.9	55	41.82
CR11G03690	Chlamydomonas reinhardtii	6e-08	55.5	55	41.82
PTI_10G01940	Phaeodactylum tricornutum	6e-08	54.7	58	32.76
ATR_00152G00140	Amborella trichopoda	6e-08	52.0	48	37.50
emh554830	Emiliania huxleyi	6e-08	52.0	35	45.71
ATR_00008G01040	Amborella trichopoda	7e-08	54.3	61	42.62
AT2G20030	Arabidopsis thaliana	7e-08	54.3	68	45.59
AT3G19950	Arabidopsis thaliana	8e-08	54.3	56	35.71
OS02G57460	Oryza sativa	8e-08	54.3	115	28.70
SPBP4H10.07	Schizosaccharomyces pombe	8e-08	54.7	52	44.23
PP00399G00070	Physcomitrella patens	8e-08	54.3	52	44.23
ccr68560	Chondrus crispus	9e-08	52.4	48	45.83
OS07G23970	Oryza sativa	9e-08	52.0	48	41.67
CV00G57850	Coccomyxa subellipsoidea C-169	9e-08	51.6	84	32.14
ENSMUSG00000039328	Mus musculus	1e-07	52.0	61	39.34
OS03G44642	Oryza sativa	1e-07	52.0	50	36.00
OS07G27950	Oryza sativa	1e-07	53.9	58	41.38
AT4G28890	Arabidopsis thaliana	1e-07	53.9	78	43.59
AT3G62690	Arabidopsis thaliana	1e-07	53.1	49	51.02
AT4G32600	Arabidopsis thaliana	1e-07	53.9	53	39.62
OS06G11450	Oryza sativa	1e-07	53.9	65	41.54
ATR_00144G00130	Amborella trichopoda	1e-07	53.9	59	33.90
OS12G42540	Oryza sativa	1e-07	50.4	55	41.82
PP00249G00310	Physcomitrella patens	1e-07	53.9	147	29.25
AT4G10150	Arabidopsis thaliana	1e-07	52.8	54	40.74
AT4G38140	Arabidopsis thaliana	2e-07	51.2	58	37.93
OS09G15430	Oryza sativa	2e-07	53.5	55	40.00
ORCC809_04G01210	Ostreococcus sp RCC809	2e-07	51.6	47	44.68
OS10G30310	Oryza sativa	2e-07	50.8	45	44.44
AT4G10160	Arabidopsis thaliana	2e-07	52.4	54	40.74
PP00013G01060	Physcomitrella patens	2e-07	53.1	52	44.23
pte413880	Paramecium tetraurelia	2e-07	53.1	80	33.75
AT1G53190	Arabidopsis thaliana	2e-07	53.1	58	36.21
OS06G48065	Oryza sativa	2e-07	53.1	71	42.25
PP00254G00180	Physcomitrella patens	2e-07	53.5	63	31.75
OS02G50290	Oryza sativa	2e-07	50.4	48	43.75
AT1G80400	Arabidopsis thaliana	2e-07	52.8	46	41.30
OS06G34860	Oryza sativa	2e-07	51.2	52	42.31
AT5G10380	Arabidopsis thaliana	3e-07	52.4	53	43.40
ATR_00022G00310	Amborella trichopoda	3e-07	50.4	57	42.11
ATR_00095G01470	Amborella trichopoda	3e-07	50.4	61	37.70
OS02G58540	Oryza sativa	3e-07	51.2	52	40.38
ENSMUSG00000060673	Mus musculus	3e-07	52.8	83	31.33
pte32620	Paramecium tetraurelia	4e-07	50.1	52	38.46
OS05G07070	Oryza sativa	4e-07	52.4	47	44.68
CM09G01440	Cyanidioschyzon merolae	4e-07	52.0	51	45.10
OS10G42390	Oryza sativa	4e-07	50.8	69	39.13
OS01G50750	Oryza sativa	4e-07	52.0	67	32.84
PP00067G00790	Physcomitrella patens	5e-07	52.0	54	42.59
pte710860	Paramecium tetraurelia	5e-07	52.0	65	33.85
ENSG00000133874	Homo sapiens	5e-07	50.1	54	40.74
FBgn0039875	Drosophila melanogaster	6e-07	52.0	56	41.07
AT1G68070	Arabidopsis thaliana	6e-07	51.6	46	45.65
phs78170	Phytophtora sojae	6e-07	52.0	83	25.30
OS01G08340	Oryza sativa	6e-07	51.6	55	40.00
OS01G06590	Oryza sativa	6e-07	52.0	49	38.78
MRCC299_04G05900	Micromonas sp RCC299	6e-07	51.6	47	36.17
AT3G61180	Arabidopsis thaliana	6e-07	51.6	46	45.65
PP00020G01310	Physcomitrella patens	6e-07	51.6	66	37.88
OS02G54624	Oryza sativa	7e-07	51.6	50	40.00
AT5G27420	Arabidopsis thaliana	7e-07	51.6	120	29.17
AA0006G03870	Aureococcus anophagefferens	7e-07	51.6	51	41.18
PTI_14G02930	Phaeodactylum tricornutum	7e-07	51.6	60	36.67
AT1G73760	Arabidopsis thaliana	7e-07	51.6	48	37.50
ATR_00056G00130	Amborella trichopoda	7e-07	51.6	63	44.44
pte746960	Paramecium tetraurelia	7e-07	51.6	73	35.62
ATR_00019G00410	Amborella trichopoda	7e-07	49.7	76	32.89
PP00162G00360	Physcomitrella patens	8e-07	51.6	63	31.75
OS07G30100	Oryza sativa	8e-07	51.6	78	32.05
ccr92060	Chondrus crispus	8e-07	51.2	50	36.00
OS09G29310	Oryza sativa	8e-07	51.2	49	44.90
PP00129G00510	Physcomitrella patens	8e-07	51.6	44	40.91
pte783360	Paramecium tetraurelia	8e-07	51.2	55	34.55
ES0059G00790	Ectocarpus siliculosus	8e-07	51.2	53	37.74
OT_12G01390	Ostreococcus tauri	9e-07	51.6	87	29.89
ENSG00000127870	Homo sapiens	9e-07	51.6	47	40.43
gsu141830	Galdieria sulphuraria	9e-07	50.8	49	42.86
AT5G05810	Arabidopsis thaliana	1e-06	50.8	72	43.06
AT2G27940	Arabidopsis thaliana	1e-06	50.4	71	32.39
AC00G30010	Asterochloris sp. Cgr-DA1pho v2.0	1e-06	48.1	50	40.00
ES0077G00310	Ectocarpus siliculosus	1e-06	50.8	48	39.58
DDB_G0271294	Dictyostelium discoideum	1e-06	49.3	55	38.18
OS05G47670	Oryza sativa	1e-06	50.8	49	36.73
AT2G01735	Arabidopsis thaliana	1e-06	50.8	46	43.48
ATR_00002G01840	Amborella trichopoda	1e-06	50.8	67	40.30
AT3G46620	Arabidopsis thaliana	1e-06	50.8	74	31.08
AT2G37580	Arabidopsis thaliana	1e-06	50.4	56	46.43
PP00071G00440	Physcomitrella patens	1e-06	50.8	53	41.51
pte42690	Paramecium tetraurelia	1e-06	50.4	126	30.95
AT5G43420	Arabidopsis thaliana	1e-06	50.8	47	48.94
pte255860	Paramecium tetraurelia	1e-06	50.8	52	44.23
MRCC299_02G07260	Micromonas sp RCC299	1e-06	50.8	51	41.18
phs354740	Phytophtora sojae	1e-06	50.4	50	42.00
OS10G41660	Oryza sativa	1e-06	50.8	71	33.80
PTI_22G02070	Phaeodactylum tricornutum	1e-06	50.4	46	41.30
BPRRCC1105_05G04420	Bathycoccus prasinos	1e-06	50.8	43	44.19
pte707200	Paramecium tetraurelia	1e-06	50.4	72	36.11
ORCC809_09G00750	Ostreococcus sp RCC809	1e-06	50.8	83	28.92
AT1G22500	Arabidopsis thaliana	1e-06	50.4	71	39.44
OM_05G04130	Ostreococcus mediterraneus	2e-06	50.1	84	29.76
ATR_00049G01450	Amborella trichopoda	2e-06	50.1	88	31.82
gsu141950	Galdieria sulphuraria	2e-06	50.1	50	46.00
pte524730	Paramecium tetraurelia	2e-06	50.4	81	34.57
OS01G11460	Oryza sativa	2e-06	49.3	65	35.38
ATR_00060G00760	Amborella trichopoda	2e-06	49.7	50	46.00
AT2G47560	Arabidopsis thaliana	2e-06	49.7	68	39.71
ES0000G01350	Ectocarpus siliculosus	2e-06	50.4	56	35.71
emh387060	Emiliania huxleyi	2e-06	47.8	54	31.48
MRCC299_03G02300	Micromonas sp RCC299	2e-06	50.4	45	35.56
pte623100	Paramecium tetraurelia	2e-06	50.1	51	35.29
BPRRCC1105_07G03320	Bathycoccus prasinos	2e-06	48.9	47	40.43
OS05G08610	Oryza sativa	2e-06	50.1	55	34.55
ENSG00000159461	Homo sapiens	2e-06	50.4	62	37.10
pte413860	Paramecium tetraurelia	2e-06	50.1	66	33.33
ES0123G00340	Ectocarpus siliculosus	2e-06	50.1	73	35.62
OS02G50930	Oryza sativa	2e-06	50.1	74	35.14
ATR_00002G00830	Amborella trichopoda	2e-06	49.7	75	36.00
OS09G26400	Oryza sativa	2e-06	49.7	70	37.14
VC00G90300	Volvox carteri	2e-06	50.4	51	41.18
gsu27370	Galdieria sulphuraria	2e-06	50.1	61	36.07
AT2G15580	Arabidopsis thaliana	2e-06	48.9	55	40.00
ES0022G00080	Ectocarpus siliculosus	2e-06	50.4	62	37.10
OS03G22080	Oryza sativa	2e-06	48.9	56	37.50
ATR_00008G01180	Amborella trichopoda	3e-06	49.7	49	46.94
BPRRCC1105_08G04790	Bathycoccus prasinos	3e-06	50.1	49	42.86
AT1G17970	Arabidopsis thaliana	3e-06	49.7	53	33.96
OL06G03970	Ostreococcus lucimarinus	3e-06	47.8	57	35.09
OS02G55520	Oryza sativa	3e-06	49.7	44	38.64
TP22G02510	Thalassiosira pseudonana	3e-06	49.7	56	37.50
CR12G17480	Chlamydomonas reinhardtii	3e-06	49.7	51	39.22
OS08G01360	Oryza sativa	3e-06	49.7	59	35.59
ATR_00099G00710	Amborella trichopoda	3e-06	49.3	134	29.85
AT4G26400	Arabidopsis thaliana	3e-06	49.7	120	29.17
FBgn0037653	Drosophila melanogaster	3e-06	49.7	48	39.58
OS03G20870	Oryza sativa	3e-06	49.3	86	31.40
OS05G51780	Oryza sativa	3e-06	49.7	64	39.06
gsu25290	Galdieria sulphuraria	3e-06	49.3	50	42.00
AT5G47610	Arabidopsis thaliana	3e-06	48.1	64	42.19
ATR_00129G00980	Amborella trichopoda	3e-06	47.4	54	38.89
pte42670	Paramecium tetraurelia	3e-06	49.7	66	39.39
MP03G04110	Micromonas pusilla strain CCMP1545	3e-06	49.7	70	40.00
FC008G05040	Fragilariopsis cylindrus	3e-06	49.7	51	39.22
ORCC809_06G03790	Ostreococcus sp RCC809	4e-06	47.4	85	29.41
BPRRCC1105_11G00360	Bathycoccus prasinos	4e-06	49.7	54	40.74
PP00102G00500	Physcomitrella patens	4e-06	49.3	49	44.90
WBGene00021842	Caenorhabditis elegans	4e-06	49.3	52	36.54
VC00G109640	Volvox carteri	4e-06	47.4	58	37.93
AT4G11680	Arabidopsis thaliana	4e-06	49.3	46	43.48
ATR_00024G01230	Amborella trichopoda	4e-06	48.9	53	39.62
OT_11G00420	Ostreococcus tauri	4e-06	49.7	55	43.64
OS12G04590	Oryza sativa	4e-06	48.5	46	39.13
CV00G84110	Coccomyxa subellipsoidea C-169	4e-06	47.0	52	40.38
AT5G05530	Arabidopsis thaliana	4e-06	48.1	54	44.44
OS06G07100	Oryza sativa	4e-06	48.9	45	48.89
pte380100	Paramecium tetraurelia	4e-06	49.3	46	47.83
OS07G43740	Oryza sativa	4e-06	48.1	60	36.67
AT4G17905	Arabidopsis thaliana	5e-06	48.9	65	36.92
PTI_14G02520	Phaeodactylum tricornutum	5e-06	48.5	121	29.75
ATR_00069G00390	Amborella trichopoda	5e-06	48.9	49	38.78
OS12G04660	Oryza sativa	5e-06	48.1	46	39.13
phs282020	Phytophtora sojae	5e-06	49.3	50	42.00
ENSMUSG00000048911	Mus musculus	5e-06	47.4	53	37.74
AT5G59550	Arabidopsis thaliana	5e-06	48.9	76	30.26
pte297560	Paramecium tetraurelia	5e-06	47.0	56	33.93
ENSG00000141622	Homo sapiens	5e-06	48.9	46	36.96
Naga_100130g11	Nannochloropsis gaditana	5e-06	46.6	49	34.69
MP01G05430	Micromonas pusilla strain CCMP1545	5e-06	49.3	59	40.68
OS01G74040	Oryza sativa	5e-06	48.5	66	33.33
AT5G55970	Arabidopsis thaliana	5e-06	48.9	49	40.82
FC001G16980	Fragilariopsis cylindrus	6e-06	45.4	49	44.90
ENSG00000101236	Homo sapiens	6e-06	47.4	53	37.74
AT1G26800	Arabidopsis thaliana	6e-06	48.1	51	33.33
pte747000	Paramecium tetraurelia	6e-06	48.9	48	43.75
CR01G00160	Chlamydomonas reinhardtii	6e-06	48.9	47	38.30
pte373630	Paramecium tetraurelia	6e-06	48.5	64	37.50
AT4G09120	Arabidopsis thaliana	6e-06	48.5	54	37.04
AT5G42940	Arabidopsis thaliana	6e-06	48.9	69	30.43
MRCC299_03G07480	Micromonas sp RCC299	7e-06	47.4	42	40.48
ATR_00040G01970	Amborella trichopoda	7e-06	48.5	59	38.98
phs342870	Phytophtora sojae	7e-06	48.9	64	32.81
OS01G58780	Oryza sativa	7e-06	48.5	49	40.82
SPAP32A8.03c	Schizosaccharomyces pombe	7e-06	48.5	49	34.69
OS10G39450	Oryza sativa	7e-06	48.1	50	42.00
CR13G04340	Chlamydomonas reinhardtii	7e-06	48.5	49	40.82
pte376130	Paramecium tetraurelia	7e-06	48.5	52	34.62
OS12G39110	Oryza sativa	7e-06	48.1	143	27.27
ATR_00002G01970	Amborella trichopoda	7e-06	48.1	49	44.90
AT1G49220	Arabidopsis thaliana	7e-06	48.1	51	45.10
OT_04G04210	Ostreococcus tauri	7e-06	47.4	44	45.45
pte336740	Paramecium tetraurelia	7e-06	48.1	64	35.94
AP00G60620	Auxenochlorella protothecoides	7e-06	48.5	63	36.51
OS11G04280	Oryza sativa	7e-06	47.8	59	38.98
OS11G04281	Oryza sativa	7e-06	47.8	59	38.98
ATR_00007G00290	Amborella trichopoda	7e-06	47.4	54	40.74
PP00295G00050	Physcomitrella patens	8e-06	48.5	58	36.21
MRCC299_09G05230	Micromonas sp RCC299	8e-06	48.1	65	33.85
ES0060G00270	Ectocarpus siliculosus	8e-06	48.1	48	37.50
pte659820	Paramecium tetraurelia	9e-06	48.1	74	32.43
OS02G35440	Oryza sativa	9e-06	47.4	50	44.00
pte322620	Paramecium tetraurelia	9e-06	45.8	59	32.20
pte413840	Paramecium tetraurelia	9e-06	48.1	89	32.58
OS05G41520	Oryza sativa	9e-06	48.1	58	34.48
pte459170	Paramecium tetraurelia	9e-06	48.1	90	33.33
PTI_15G03630	Phaeodactylum tricornutum	9e-06	48.1	43	37.21
pte129990	Paramecium tetraurelia	9e-06	48.1	60	36.67
OS04G49550	Oryza sativa	9e-06	47.4	52	42.31
OS02G36330	Oryza sativa	9e-06	48.1	48	43.75
pte656310	Paramecium tetraurelia	9e-06	46.6	52	36.54
HE0000G25920	Helicosporidium sp.	9e-06	48.1	146	26.03
MP04G03360	Micromonas pusilla strain CCMP1545	9e-06	48.1	52	36.54
OS11G39640	Oryza sativa	9e-06	48.1	50	40.00
AT4G26580	Arabidopsis thaliana	9e-06	48.1	53	41.51
OS03G22830	Oryza sativa	1e-05	47.8	50	40.00
ATR_00018G01200	Amborella trichopoda	1e-05	47.8	61	31.15
CM20G04430	Cyanidioschyzon merolae	1e-05	48.1	48	33.33

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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