Notice (8): Undefined index: common_name [APP/View/Analysis/custom_tree_creation.ctp, line 169]
Code Context
                                                    echo "<td><input type='checkbox' name='selected_genes[]' value='".$similarity_hit['gene_id']."' ".$checked." /></td>\n";
                                                    echo "<td>".$this->Html->link($similarity_hit_gene,array("controller"=>"genes","action"=>"view",$similarity_hit_gene),array("target"=>"_blank"))."</td>\n";
                                                    echo "<td>".$this->Html->link($similarity_hit['common_name'],array("controller"=>"organism","action"=>"view",urlencode($similarity_hit['common_name'])))."</td>\n";
$viewFile = '/xtras/group/biocomp/plaza/versions/plaza_pico_03/app/View/Analysis/custom_tree_creation.ctp'
$dataForView = array(
	'allowed_extra_sequences_types' => array(
		'aa' => 'Protein',
		'dna' => 'DNA'
	),
	'allowed_editing_methods' => array(
		'column' => 'Positions only',
		'row' => 'Genes only',
		'column_row' => 'Positions and Genes',
		'none' => 'No editing'
	),
	'allowed_tree_programs' => array(
		'fasttree' => 'FastTree',
		'iqtree' => 'IQ-TREE (includes model testing)',
		'raxml' => 'RAxML',
		'phyml' => 'PhyML'
	),
	'allowed_msa_programs' => array(
		'muscle' => 'MUSCLE',
		'mafft' => 'MAFFT'
	),
	'allowed_number_blasthits' => array(
		(int) 0 => 'all',
		(int) 1 => (int) 20,
		(int) 2 => (int) 10,
		(int) 3 => (int) 5,
		(int) 4 => (int) 1
	),
	'similarity_hits_genes' => array(
		'AT1G31230' => array(
			'gene_id' => 'AT1G31230',
			'e_value' => '0.0',
			'bit_score' => '1873',
			'alignment_length' => '912',
			'identity_percentage' => '100.00',
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AT4G19710' => array(
			'gene_id' => 'AT4G19710',
			'e_value' => '0.0',
			'bit_score' => '1449',
			'alignment_length' => '850',
			'identity_percentage' => '81.06',
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ATR_00002G04450' => array(
			'gene_id' => 'ATR_00002G04450',
			'e_value' => '0.0',
			'bit_score' => '1425',
			'alignment_length' => '872',
			'identity_percentage' => '77.98',
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OS08G25390' => array(
			'gene_id' => 'OS08G25390',
			'e_value' => '0.0',
			'bit_score' => '1352',
			'alignment_length' => '856',
			'identity_percentage' => '74.30',
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OS09G12290' => array(
			'gene_id' => 'OS09G12290',
			'e_value' => '0.0',
			'bit_score' => '1323',
			'alignment_length' => '891',
			'identity_percentage' => '71.83',
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PP00088G00350' => array(
			'gene_id' => 'PP00088G00350',
			'e_value' => '0.0',
			'bit_score' => '1213',
			'alignment_length' => '882',
			'identity_percentage' => '66.44',
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PP00194G00960' => array(
			'gene_id' => 'PP00194G00960',
			'e_value' => '0.0',
			'bit_score' => '1182',
			'alignment_length' => '887',
			'identity_percentage' => '65.39',
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CV00G86690' => array(
			'gene_id' => 'CV00G86690',
			'e_value' => '0.0',
			'bit_score' => '1026',
			'alignment_length' => '837',
			'identity_percentage' => '62.01',
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'VC00G129980' => array(
			'gene_id' => 'VC00G129980',
			'e_value' => '0.0',
			'bit_score' => '1005',
			'alignment_length' => '845',
			'identity_percentage' => '58.34',
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OM_10G03330' => array(
			'gene_id' => 'OM_10G03330',
			'e_value' => '0.0',
			'bit_score' => '1004',
			'alignment_length' => '857',
			'identity_percentage' => '57.29',
			'species' => 'ome',
			'common_name' => 'Ostreococcus mediterraneus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CR00G02160' => array(
			'gene_id' => 'CR00G02160',
			'e_value' => '0.0',
			'bit_score' => '1003',
			'alignment_length' => '846',
			'identity_percentage' => '58.27',
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OT_09G03630' => array(
			'gene_id' => 'OT_09G03630',
			'e_value' => '0.0',
			'bit_score' => '986',
			'alignment_length' => '862',
			'identity_percentage' => '55.57',
			'species' => 'ota',
			'common_name' => 'Ostreococcus tauri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'MRCC299_14G01700' => array(
			'gene_id' => 'MRCC299_14G01700',
			'e_value' => '0.0',
			'bit_score' => '965',
			'alignment_length' => '862',
			'identity_percentage' => '55.92',
			'species' => 'mrcc299',
			'common_name' => 'Micromonas sp RCC299',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PI00G37250' => array(
			'gene_id' => 'PI00G37250',
			'e_value' => '0.0',
			'bit_score' => '959',
			'alignment_length' => '847',
			'identity_percentage' => '56.67',
			'species' => 'pse3',
			'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'RCC4223.01g10830' => array(
			'gene_id' => 'RCC4223.01g10830',
			'e_value' => '0.0',
			'bit_score' => '959',
			'alignment_length' => '847',
			'identity_percentage' => '56.91',
			'species' => 'prcc4223',
			'common_name' => 'Picochlorum_RCC4223',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AC00G36650' => array(
			'gene_id' => 'AC00G36650',
			'e_value' => '0.0',
			'bit_score' => '954',
			'alignment_length' => '874',
			'identity_percentage' => '54.81',
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'BPRRCC1105_10G00930' => array(
			'gene_id' => 'BPRRCC1105_10G00930',
			'e_value' => '0.0',
			'bit_score' => '945',
			'alignment_length' => '870',
			'identity_percentage' => '54.71',
			'species' => 'bprrcc1105',
			'common_name' => 'Bathycoccus prasinos',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ORCC809_09G02760' => array(
			'gene_id' => 'ORCC809_09G02760',
			'e_value' => '0.0',
			'bit_score' => '924',
			'alignment_length' => '814',
			'identity_percentage' => '55.65',
			'species' => 'orcc809',
			'common_name' => 'Ostreococcus sp RCC809',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OL09G03300' => array(
			'gene_id' => 'OL09G03300',
			'e_value' => '0.0',
			'bit_score' => '923',
			'alignment_length' => '811',
			'identity_percentage' => '55.24',
			'species' => 'olu',
			'common_name' => 'Ostreococcus lucimarinus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'MP03G02270' => array(
			'gene_id' => 'MP03G02270',
			'e_value' => '0.0',
			'bit_score' => '918',
			'alignment_length' => '864',
			'identity_percentage' => '53.59',
			'species' => 'mpu',
			'common_name' => 'Micromonas pusilla strain CCMP1545',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'gsu43680' => array(
			'gene_id' => 'gsu43680',
			'e_value' => '0.0',
			'bit_score' => '779',
			'alignment_length' => '926',
			'identity_percentage' => '43.95',
			'species' => 'gsu',
			'common_name' => 'Galdieria sulphuraria',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ccr145620' => array(
			'gene_id' => 'ccr145620',
			'e_value' => '0.0',
			'bit_score' => '753',
			'alignment_length' => '805',
			'identity_percentage' => '49.44',
			'species' => 'ccr',
			'common_name' => 'Chondrus crispus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CM14G01290' => array(
			'gene_id' => 'CM14G01290',
			'e_value' => '0.0',
			'bit_score' => '753',
			'alignment_length' => '909',
			'identity_percentage' => '44.44',
			'species' => 'cme',
			'common_name' => 'Cyanidioschyzon merolae',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AP00G64590' => array(
			'gene_id' => 'AP00G64590',
			'e_value' => '0.0',
			'bit_score' => '742',
			'alignment_length' => '803',
			'identity_percentage' => '48.82',
			'species' => 'apr',
			'common_name' => 'Auxenochlorella protothecoides',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'RCC4223.101g00020' => array(
			'gene_id' => 'RCC4223.101g00020',
			'e_value' => '0.0',
			'bit_score' => '569',
			'alignment_length' => '827',
			'identity_percentage' => '37.00',
			'species' => 'prcc4223',
			'common_name' => 'Picochlorum_RCC4223',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'TP07G05850' => array(
			'gene_id' => 'TP07G05850',
			'e_value' => '2e-178',
			'bit_score' => '548',
			'alignment_length' => '847',
			'identity_percentage' => '36.36',
			'species' => 'tps',
			'common_name' => 'Thalassiosira pseudonana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'Naga_100001g91' => array(
			'gene_id' => 'Naga_100001g91',
			'e_value' => '1e-175',
			'bit_score' => '540',
			'alignment_length' => '889',
			'identity_percentage' => '36.33',
			'species' => 'nga',
			'common_name' => 'Nannochloropsis gaditana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PP00169G00390' => array(
			'gene_id' => 'PP00169G00390',
			'e_value' => '5e-169',
			'bit_score' => '514',
			'alignment_length' => '462',
			'identity_percentage' => '55.63',
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AA0025G00710' => array(
			'gene_id' => 'AA0025G00710',
			'e_value' => '5e-169',
			'bit_score' => '521',
			'alignment_length' => '883',
			'identity_percentage' => '35.79',
			'species' => 'aan',
			'common_name' => 'Aureococcus anophagefferens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PP00088G00320' => array(
			'gene_id' => 'PP00088G00320',
			'e_value' => '6e-167',
			'bit_score' => '498',
			'alignment_length' => '365',
			'identity_percentage' => '63.29',
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ES0102G00310' => array(
			'gene_id' => 'ES0102G00310',
			'e_value' => '4e-166',
			'bit_score' => '516',
			'alignment_length' => '911',
			'identity_percentage' => '35.68',
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'FC001G02950' => array(
			'gene_id' => 'FC001G02950',
			'e_value' => '1e-165',
			'bit_score' => '514',
			'alignment_length' => '884',
			'identity_percentage' => '34.73',
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'HE0000G49400' => array(
			'gene_id' => 'HE0000G49400',
			'e_value' => '6e-160',
			'bit_score' => '482',
			'alignment_length' => '422',
			'identity_percentage' => '56.40',
			'species' => 'hsp',
			'common_name' => 'Helicosporidium sp. ',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PTI_15G03410' => array(
			'gene_id' => 'PTI_15G03410',
			'e_value' => '5e-151',
			'bit_score' => '478',
			'alignment_length' => '943',
			'identity_percentage' => '34.25',
			'species' => 'ptri',
			'common_name' => 'Phaeodactylum tricornutum',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'FC013G03010' => array(
			'gene_id' => 'FC013G03010',
			'e_value' => '6e-150',
			'bit_score' => '472',
			'alignment_length' => '871',
			'identity_percentage' => '36.39',
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'phs366730' => array(
			'gene_id' => 'phs366730',
			'e_value' => '2e-148',
			'bit_score' => '474',
			'alignment_length' => '878',
			'identity_percentage' => '34.85',
			'species' => 'phs',
			'common_name' => 'Phytophtora sojae',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CV00G87360' => array(
			'gene_id' => 'CV00G87360',
			'e_value' => '1e-127',
			'bit_score' => '396',
			'alignment_length' => '360',
			'identity_percentage' => '52.50',
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CR02G09240' => array(
			'gene_id' => 'CR02G09240',
			'e_value' => '3e-116',
			'bit_score' => '367',
			'alignment_length' => '362',
			'identity_percentage' => '52.49',
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CNC64A_007G03330' => array(
			'gene_id' => 'CNC64A_007G03330',
			'e_value' => '7e-116',
			'bit_score' => '366',
			'alignment_length' => '383',
			'identity_percentage' => '47.52',
			'species' => 'cnc64a',
			'common_name' => 'Chlorella sp NC64A',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AC00G92770' => array(
			'gene_id' => 'AC00G92770',
			'e_value' => '8e-116',
			'bit_score' => '364',
			'alignment_length' => '324',
			'identity_percentage' => '55.86',
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'VC00G12880' => array(
			'gene_id' => 'VC00G12880',
			'e_value' => '2e-109',
			'bit_score' => '349',
			'alignment_length' => '369',
			'identity_percentage' => '48.51',
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'HE0000G26650' => array(
			'gene_id' => 'HE0000G26650',
			'e_value' => '4e-109',
			'bit_score' => '348',
			'alignment_length' => '363',
			'identity_percentage' => '49.59',
			'species' => 'hsp',
			'common_name' => 'Helicosporidium sp. ',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AP00G26920' => array(
			'gene_id' => 'AP00G26920',
			'e_value' => '5e-109',
			'bit_score' => '347',
			'alignment_length' => '371',
			'identity_percentage' => '49.06',
			'species' => 'apr',
			'common_name' => 'Auxenochlorella protothecoides',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PI00G41930' => array(
			'gene_id' => 'PI00G41930',
			'e_value' => '2e-107',
			'bit_score' => '343',
			'alignment_length' => '357',
			'identity_percentage' => '47.06',
			'species' => 'pse3',
			'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'RCC4223.14g02260' => array(
			'gene_id' => 'RCC4223.14g02260',
			'e_value' => '3e-103',
			'bit_score' => '332',
			'alignment_length' => '360',
			'identity_percentage' => '45.56',
			'species' => 'prcc4223',
			'common_name' => 'Picochlorum_RCC4223',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'MRCC299_10G00940' => array(
			'gene_id' => 'MRCC299_10G00940',
			'e_value' => '1e-92',
			'bit_score' => '305',
			'alignment_length' => '382',
			'identity_percentage' => '45.29',
			'species' => 'mrcc299',
			'common_name' => 'Micromonas sp RCC299',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'MP13G03550' => array(
			'gene_id' => 'MP13G03550',
			'e_value' => '6e-87',
			'bit_score' => '291',
			'alignment_length' => '393',
			'identity_percentage' => '43.77',
			'species' => 'mpu',
			'common_name' => 'Micromonas pusilla strain CCMP1545',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'SPBC776.03' => array(
			'gene_id' => 'SPBC776.03',
			'e_value' => '3e-85',
			'bit_score' => '284',
			'alignment_length' => '340',
			'identity_percentage' => '44.71',
			'species' => 'scp',
			'common_name' => 'Schizosaccharomyces pombe',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OM_03G05220' => array(
			'gene_id' => 'OM_03G05220',
			'e_value' => '6e-85',
			'bit_score' => '283',
			'alignment_length' => '362',
			'identity_percentage' => '41.99',
			'species' => 'ome',
			'common_name' => 'Ostreococcus mediterraneus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OT_05G05110' => array(
			'gene_id' => 'OT_05G05110',
			'e_value' => '1e-83',
			'bit_score' => '279',
			'alignment_length' => '270',
			'identity_percentage' => '50.37',
			'species' => 'ota',
			'common_name' => 'Ostreococcus tauri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ORCC809_05G04850' => array(
			'gene_id' => 'ORCC809_05G04850',
			'e_value' => '3e-81',
			'bit_score' => '273',
			'alignment_length' => '271',
			'identity_percentage' => '50.55',
			'species' => 'orcc809',
			'common_name' => 'Ostreococcus sp RCC809',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'phs196490' => array(
			'gene_id' => 'phs196490',
			'e_value' => '3e-79',
			'bit_score' => '281',
			'alignment_length' => '880',
			'identity_percentage' => '25.80',
			'species' => 'phs',
			'common_name' => 'Phytophtora sojae',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'emh307330' => array(
			'gene_id' => 'emh307330',
			'e_value' => '2e-75',
			'bit_score' => '270',
			'alignment_length' => '488',
			'identity_percentage' => '34.43',
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OL05G04900' => array(
			'gene_id' => 'OL05G04900',
			'e_value' => '1e-71',
			'bit_score' => '244',
			'alignment_length' => '275',
			'identity_percentage' => '51.64',
			'species' => 'olu',
			'common_name' => 'Ostreococcus lucimarinus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'YJR139C' => array(
			'gene_id' => 'YJR139C',
			'e_value' => '4e-71',
			'bit_score' => '245',
			'alignment_length' => '367',
			'identity_percentage' => '40.60',
			'species' => 'sac',
			'common_name' => 'Saccharomyces cerevisiae strain S288C',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'BPRRCC1105_15G00250' => array(
			'gene_id' => 'BPRRCC1105_15G00250',
			'e_value' => '2e-64',
			'bit_score' => '229',
			'alignment_length' => '276',
			'identity_percentage' => '48.19',
			'species' => 'bprrcc1105',
			'common_name' => 'Bathycoccus prasinos',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'FC005G03510' => array(
			'gene_id' => 'FC005G03510',
			'e_value' => '3e-60',
			'bit_score' => '212',
			'alignment_length' => '286',
			'identity_percentage' => '40.56',
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OS12G03190' => array(
			'gene_id' => 'OS12G03190',
			'e_value' => '2e-49',
			'bit_score' => '184',
			'alignment_length' => '378',
			'identity_percentage' => '32.28',
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ATR_00119G01000' => array(
			'gene_id' => 'ATR_00119G01000',
			'e_value' => '3e-49',
			'bit_score' => '183',
			'alignment_length' => '271',
			'identity_percentage' => '40.22',
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'Naga_100004g167' => array(
			'gene_id' => 'Naga_100004g167',
			'e_value' => '6e-49',
			'bit_score' => '187',
			'alignment_length' => '471',
			'identity_percentage' => '29.30',
			'species' => 'nga',
			'common_name' => 'Nannochloropsis gaditana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PP00286G00200' => array(
			'gene_id' => 'PP00286G00200',
			'e_value' => '2e-48',
			'bit_score' => '186',
			'alignment_length' => '479',
			'identity_percentage' => '27.14',
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AT5G21060' => array(
			'gene_id' => 'AT5G21060',
			'e_value' => '4e-47',
			'bit_score' => '177',
			'alignment_length' => '266',
			'identity_percentage' => '36.84',
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AT3G02020' => array(
			'gene_id' => 'AT3G02020',
			'e_value' => '6e-46',
			'bit_score' => '178',
			'alignment_length' => '550',
			'identity_percentage' => '27.27',
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AA0008G00380' => array(
			'gene_id' => 'AA0008G00380',
			'e_value' => '1e-45',
			'bit_score' => '173',
			'alignment_length' => '356',
			'identity_percentage' => '37.08',
			'species' => 'aan',
			'common_name' => 'Aureococcus anophagefferens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OS07G20544' => array(
			'gene_id' => 'OS07G20544',
			'e_value' => '3e-45',
			'bit_score' => '176',
			'alignment_length' => '479',
			'identity_percentage' => '29.02',
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ccr178580' => array(
			'gene_id' => 'ccr178580',
			'e_value' => '3e-45',
			'bit_score' => '177',
			'alignment_length' => '485',
			'identity_percentage' => '28.04',
			'species' => 'ccr',
			'common_name' => 'Chondrus crispus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OS11G03470' => array(
			'gene_id' => 'OS11G03470',
			'e_value' => '1e-44',
			'bit_score' => '171',
			'alignment_length' => '389',
			'identity_percentage' => '31.88',
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PP00162G00320' => array(
			'gene_id' => 'PP00162G00320',
			'e_value' => '1e-44',
			'bit_score' => '175',
			'alignment_length' => '479',
			'identity_percentage' => '25.89',
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CM10G00160' => array(
			'gene_id' => 'CM10G00160',
			'e_value' => '1e-44',
			'bit_score' => '175',
			'alignment_length' => '472',
			'identity_percentage' => '29.45',
			'species' => 'cme',
			'common_name' => 'Cyanidioschyzon merolae',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CV00G51230' => array(
			'gene_id' => 'CV00G51230',
			'e_value' => '3e-44',
			'bit_score' => '171',
			'alignment_length' => '476',
			'identity_percentage' => '27.94',
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OS01G70300' => array(
			'gene_id' => 'OS01G70300',
			'e_value' => '3e-44',
			'bit_score' => '173',
			'alignment_length' => '471',
			'identity_percentage' => '26.75',
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AT5G14060' => array(
			'gene_id' => 'AT5G14060',
			'e_value' => '5e-44',
			'bit_score' => '172',
			'alignment_length' => '475',
			'identity_percentage' => '26.32',
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'MRCC299_01G04440' => array(
			'gene_id' => 'MRCC299_01G04440',
			'e_value' => '6e-44',
			'bit_score' => '171',
			'alignment_length' => '482',
			'identity_percentage' => '28.42',
			'species' => 'mrcc299',
			'common_name' => 'Micromonas sp RCC299',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OS03G63330' => array(
			'gene_id' => 'OS03G63330',
			'e_value' => '9e-44',
			'bit_score' => '172',
			'alignment_length' => '479',
			'identity_percentage' => '27.97',
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PTI_15G02630' => array(
			'gene_id' => 'PTI_15G02630',
			'e_value' => '1e-43',
			'bit_score' => '171',
			'alignment_length' => '474',
			'identity_percentage' => '29.75',
			'species' => 'ptri',
			'common_name' => 'Phaeodactylum tricornutum',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'gsu111270' => array(
			'gene_id' => 'gsu111270',
			'e_value' => '2e-43',
			'bit_score' => '170',
			'alignment_length' => '484',
			'identity_percentage' => '29.75',
			'species' => 'gsu',
			'common_name' => 'Galdieria sulphuraria',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OL01G01670' => array(
			'gene_id' => 'OL01G01670',
			'e_value' => '4e-43',
			'bit_score' => '168',
			'alignment_length' => '477',
			'identity_percentage' => '27.25',
			'species' => 'olu',
			'common_name' => 'Ostreococcus lucimarinus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'YER052C' => array(
			'gene_id' => 'YER052C',
			'e_value' => '5e-42',
			'bit_score' => '166',
			'alignment_length' => '504',
			'identity_percentage' => '27.78',
			'species' => 'sac',
			'common_name' => 'Saccharomyces cerevisiae strain S288C',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'MP05G06920' => array(
			'gene_id' => 'MP05G06920',
			'e_value' => '1e-41',
			'bit_score' => '166',
			'alignment_length' => '479',
			'identity_percentage' => '27.97',
			'species' => 'mpu',
			'common_name' => 'Micromonas pusilla strain CCMP1545',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'SPBC19F5.04' => array(
			'gene_id' => 'SPBC19F5.04',
			'e_value' => '1e-41',
			'bit_score' => '165',
			'alignment_length' => '497',
			'identity_percentage' => '26.56',
			'species' => 'scp',
			'common_name' => 'Schizosaccharomyces pombe',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'RCC4223.16g01430' => array(
			'gene_id' => 'RCC4223.16g01430',
			'e_value' => '2e-41',
			'bit_score' => '165',
			'alignment_length' => '525',
			'identity_percentage' => '28.38',
			'species' => 'prcc4223',
			'common_name' => 'Picochlorum_RCC4223',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AT5G13280' => array(
			'gene_id' => 'AT5G13280',
			'e_value' => '2e-41',
			'bit_score' => '165',
			'alignment_length' => '486',
			'identity_percentage' => '27.16',
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'BPRRCC1105_01G01500' => array(
			'gene_id' => 'BPRRCC1105_01G01500',
			'e_value' => '3e-41',
			'bit_score' => '164',
			'alignment_length' => '505',
			'identity_percentage' => '26.14',
			'species' => 'bprrcc1105',
			'common_name' => 'Bathycoccus prasinos',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PI00G67540' => array(
			'gene_id' => 'PI00G67540',
			'e_value' => '3e-41',
			'bit_score' => '164',
			'alignment_length' => '483',
			'identity_percentage' => '28.57',
			'species' => 'pse3',
			'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ORCC809_01G04970' => array(
			'gene_id' => 'ORCC809_01G04970',
			'e_value' => '4e-41',
			'bit_score' => '162',
			'alignment_length' => '475',
			'identity_percentage' => '26.11',
			'species' => 'orcc809',
			'common_name' => 'Ostreococcus sp RCC809',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CR10G08860' => array(
			'gene_id' => 'CR10G08860',
			'e_value' => '4e-41',
			'bit_score' => '164',
			'alignment_length' => '474',
			'identity_percentage' => '28.06',
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'phs33280' => array(
			'gene_id' => 'phs33280',
			'e_value' => '5e-41',
			'bit_score' => '164',
			'alignment_length' => '521',
			'identity_percentage' => '25.14',
			'species' => 'phs',
			'common_name' => 'Phytophtora sojae',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AC00G81870' => array(
			'gene_id' => 'AC00G81870',
			'e_value' => '1e-39',
			'bit_score' => '158',
			'alignment_length' => '477',
			'identity_percentage' => '27.88',
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OM_01G05500' => array(
			'gene_id' => 'OM_01G05500',
			'e_value' => '1e-39',
			'bit_score' => '159',
			'alignment_length' => '483',
			'identity_percentage' => '27.12',
			'species' => 'ome',
			'common_name' => 'Ostreococcus mediterraneus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ES0330G00020' => array(
			'gene_id' => 'ES0330G00020',
			'e_value' => '3e-39',
			'bit_score' => '157',
			'alignment_length' => '309',
			'identity_percentage' => '31.72',
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'FC012G00090' => array(
			'gene_id' => 'FC012G00090',
			'e_value' => '3e-39',
			'bit_score' => '156',
			'alignment_length' => '476',
			'identity_percentage' => '28.15',
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OT_01G01430' => array(
			'gene_id' => 'OT_01G01430',
			'e_value' => '1e-38',
			'bit_score' => '156',
			'alignment_length' => '492',
			'identity_percentage' => '27.44',
			'species' => 'ota',
			'common_name' => 'Ostreococcus tauri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AP00G51660' => array(
			'gene_id' => 'AP00G51660',
			'e_value' => '4e-38',
			'bit_score' => '154',
			'alignment_length' => '485',
			'identity_percentage' => '26.60',
			'species' => 'apr',
			'common_name' => 'Auxenochlorella protothecoides',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AA0005G02200' => array(
			'gene_id' => 'AA0005G02200',
			'e_value' => '7e-38',
			'bit_score' => '154',
			'alignment_length' => '485',
			'identity_percentage' => '27.01',
			'species' => 'aan',
			'common_name' => 'Aureococcus anophagefferens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CNC64A_012G00390' => array(
			'gene_id' => 'CNC64A_012G00390',
			'e_value' => '7e-36',
			'bit_score' => '147',
			'alignment_length' => '484',
			'identity_percentage' => '27.27',
			'species' => 'cnc64a',
			'common_name' => 'Chlorella sp NC64A',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'emh720040' => array(
			'gene_id' => 'emh720040',
			'e_value' => '3e-35',
			'bit_score' => '144',
			'alignment_length' => '375',
			'identity_percentage' => '32.80',
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'VC00G32420' => array(
			'gene_id' => 'VC00G32420',
			'e_value' => '2e-34',
			'bit_score' => '144',
			'alignment_length' => '472',
			'identity_percentage' => '26.06',
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ATR_00016G01260' => array(
			'gene_id' => 'ATR_00016G01260',
			'e_value' => '2e-34',
			'bit_score' => '142',
			'alignment_length' => '380',
			'identity_percentage' => '29.21',
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'emh176620' => array(
			'gene_id' => 'emh176620',
			'e_value' => '2e-30',
			'bit_score' => '130',
			'alignment_length' => '520',
			'identity_percentage' => '26.54',
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'emh331300' => array(
			'gene_id' => 'emh331300',
			'e_value' => '1e-29',
			'bit_score' => '128',
			'alignment_length' => '512',
			'identity_percentage' => '26.37',
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'emh60350' => array(
			'gene_id' => 'emh60350',
			'e_value' => '2e-29',
			'bit_score' => '123',
			'alignment_length' => '200',
			'identity_percentage' => '38.00',
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'HE0000G57170' => array(
			'gene_id' => 'HE0000G57170',
			'e_value' => '7e-27',
			'bit_score' => '119',
			'alignment_length' => '516',
			'identity_percentage' => '24.61',
			'species' => 'hsp',
			'common_name' => 'Helicosporidium sp. ',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CNC64A_383G00010' => array(
			'gene_id' => 'CNC64A_383G00010',
			'e_value' => '1e-25',
			'bit_score' => '106',
			'alignment_length' => '58',
			'identity_percentage' => '84.48',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OS09G21490' => array(
			'gene_id' => 'OS09G21490',
			'e_value' => '4e-23',
			'bit_score' => '104',
			'alignment_length' => '83',
			'identity_percentage' => '63.86',
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PP04335G00010' => array(
			'gene_id' => 'PP04335G00010',
			'e_value' => '7e-20',
			'bit_score' => '94.7',
			'alignment_length' => '273',
			'identity_percentage' => '30.40',
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'phs305450' => array(
			'gene_id' => 'phs305450',
			'e_value' => '5e-18',
			'bit_score' => '91.7',
			'alignment_length' => '375',
			'identity_percentage' => '25.87',
			'species' => 'phs',
			'common_name' => 'Phytophtora sojae',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'Naga_100253g6' => array(
			'gene_id' => 'Naga_100253g6',
			'e_value' => '2e-17',
			'bit_score' => '89.7',
			'alignment_length' => '262',
			'identity_percentage' => '27.10',
			'species' => 'nga',
			'common_name' => 'Nannochloropsis gaditana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ES0018G00110' => array(
			'gene_id' => 'ES0018G00110',
			'e_value' => '3e-16',
			'bit_score' => '87.0',
			'alignment_length' => '290',
			'identity_percentage' => '27.59',
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'HE0000G42020' => array(
			'gene_id' => 'HE0000G42020',
			'e_value' => '6e-15',
			'bit_score' => '77.0',
			'alignment_length' => '87',
			'identity_percentage' => '44.83',
			'species' => 'hsp',
			'common_name' => 'Helicosporidium sp. ',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'TP08G02140' => array(
			'gene_id' => 'TP08G02140',
			'e_value' => '9e-15',
			'bit_score' => '81.6',
			'alignment_length' => '221',
			'identity_percentage' => '27.60',
			'species' => 'tps',
			'common_name' => 'Thalassiosira pseudonana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ES0192G00290' => array(
			'gene_id' => 'ES0192G00290',
			'e_value' => '2e-14',
			'bit_score' => '80.5',
			'alignment_length' => '331',
			'identity_percentage' => '26.59',
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PTI_18G02800' => array(
			'gene_id' => 'PTI_18G02800',
			'e_value' => '9e-13',
			'bit_score' => '75.5',
			'alignment_length' => '256',
			'identity_percentage' => '28.91',
			'species' => 'ptri',
			'common_name' => 'Phaeodactylum tricornutum',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'FC001G01920' => array(
			'gene_id' => 'FC001G01920',
			'e_value' => '3e-11',
			'bit_score' => '70.5',
			'alignment_length' => '256',
			'identity_percentage' => '26.95',
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'TP05G01890' => array(
			'gene_id' => 'TP05G01890',
			'e_value' => '3e-10',
			'bit_score' => '67.4',
			'alignment_length' => '254',
			'identity_percentage' => '27.17',
			'species' => 'tps',
			'common_name' => 'Thalassiosira pseudonana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PTI_06G02290' => array(
			'gene_id' => 'PTI_06G02290',
			'e_value' => '3e-09',
			'bit_score' => '64.7',
			'alignment_length' => '257',
			'identity_percentage' => '27.24',
			'species' => 'ptri',
			'common_name' => 'Phaeodactylum tricornutum',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CNC64A_007G02290' => array(
			'gene_id' => 'CNC64A_007G02290',
			'e_value' => '8e-09',
			'bit_score' => '60.5',
			'alignment_length' => '126',
			'identity_percentage' => '30.95',
			'species' => 'cnc64a',
			'common_name' => 'Chlorella sp NC64A',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'FC019G00800' => array(
			'gene_id' => 'FC019G00800',
			'e_value' => '2e-06',
			'bit_score' => '55.5',
			'alignment_length' => '258',
			'identity_percentage' => '24.81',
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'gf' => array(
				[maximum depth reached]
			)
		)
	),
	'similarity_hits_species' => array(
		'ath' => array(
			(int) 0 => 'AT1G31230',
			(int) 1 => 'AT4G19710',
			(int) 2 => 'AT5G21060',
			(int) 3 => 'AT3G02020',
			(int) 4 => 'AT5G14060',
			(int) 5 => 'AT5G13280'
		),
		'atr' => array(
			(int) 0 => 'ATR_00002G04450',
			(int) 1 => 'ATR_00119G01000',
			(int) 2 => 'ATR_00016G01260'
		),
		'osa' => array(
			(int) 0 => 'OS08G25390',
			(int) 1 => 'OS09G12290',
			(int) 2 => 'OS12G03190',
			(int) 3 => 'OS07G20544',
			(int) 4 => 'OS11G03470',
			(int) 5 => 'OS01G70300',
			(int) 6 => 'OS03G63330',
			(int) 7 => 'OS09G21490'
		),
		'ppa' => array(
			(int) 0 => 'PP00088G00350',
			(int) 1 => 'PP00194G00960',
			(int) 2 => 'PP00169G00390',
			(int) 3 => 'PP00088G00320',
			(int) 4 => 'PP00286G00200',
			(int) 5 => 'PP00162G00320',
			(int) 6 => 'PP04335G00010'
		),
		'cvu' => array(
			(int) 0 => 'CV00G86690',
			(int) 1 => 'CV00G87360',
			(int) 2 => 'CV00G51230'
		),
		'vca' => array(
			(int) 0 => 'VC00G129980',
			(int) 1 => 'VC00G12880',
			(int) 2 => 'VC00G32420'
		),
		'ome' => array(
			(int) 0 => 'OM_10G03330',
			(int) 1 => 'OM_03G05220',
			(int) 2 => 'OM_01G05500'
		),
		'cre' => array(
			(int) 0 => 'CR00G02160',
			(int) 1 => 'CR02G09240',
			(int) 2 => 'CR10G08860'
		),
		'ota' => array(
			(int) 0 => 'OT_09G03630',
			(int) 1 => 'OT_05G05110',
			(int) 2 => 'OT_01G01430'
		),
		'mrcc299' => array(
			(int) 0 => 'MRCC299_14G01700',
			(int) 1 => 'MRCC299_10G00940',
			(int) 2 => 'MRCC299_01G04440'
		),
		'pse3' => array(
			(int) 0 => 'PI00G37250',
			(int) 1 => 'PI00G41930',
			(int) 2 => 'PI00G67540'
		),
		'prcc4223' => array(
			(int) 0 => 'RCC4223.01g10830',
			(int) 1 => 'RCC4223.101g00020',
			(int) 2 => 'RCC4223.14g02260',
			(int) 3 => 'RCC4223.16g01430'
		),
		'acg' => array(
			(int) 0 => 'AC00G36650',
			(int) 1 => 'AC00G92770',
			(int) 2 => 'AC00G81870'
		),
		'bprrcc1105' => array(
			(int) 0 => 'BPRRCC1105_10G00930',
			(int) 1 => 'BPRRCC1105_15G00250',
			(int) 2 => 'BPRRCC1105_01G01500'
		),
		'orcc809' => array(
			(int) 0 => 'ORCC809_09G02760',
			(int) 1 => 'ORCC809_05G04850',
			(int) 2 => 'ORCC809_01G04970'
		),
		'olu' => array(
			(int) 0 => 'OL09G03300',
			(int) 1 => 'OL05G04900',
			(int) 2 => 'OL01G01670'
		),
		'mpu' => array(
			(int) 0 => 'MP03G02270',
			(int) 1 => 'MP13G03550',
			(int) 2 => 'MP05G06920'
		),
		'gsu' => array(
			(int) 0 => 'gsu43680',
			(int) 1 => 'gsu111270'
		),
		'ccr' => array(
			(int) 0 => 'ccr145620',
			(int) 1 => 'ccr178580'
		),
		'cme' => array(
			(int) 0 => 'CM14G01290',
			(int) 1 => 'CM10G00160'
		),
		'apr' => array(
			(int) 0 => 'AP00G64590',
			(int) 1 => 'AP00G26920',
			(int) 2 => 'AP00G51660'
		),
		'tps' => array(
			(int) 0 => 'TP07G05850',
			(int) 1 => 'TP08G02140',
			(int) 2 => 'TP05G01890'
		),
		'nga' => array(
			(int) 0 => 'Naga_100001g91',
			(int) 1 => 'Naga_100004g167',
			(int) 2 => 'Naga_100253g6'
		),
		'aan' => array(
			(int) 0 => 'AA0025G00710',
			(int) 1 => 'AA0008G00380',
			(int) 2 => 'AA0005G02200'
		),
		'esi' => array(
			(int) 0 => 'ES0102G00310',
			(int) 1 => 'ES0330G00020',
			(int) 2 => 'ES0018G00110',
			(int) 3 => 'ES0192G00290'
		),
		'fcy' => array(
			(int) 0 => 'FC001G02950',
			(int) 1 => 'FC013G03010',
			(int) 2 => 'FC005G03510',
			(int) 3 => 'FC012G00090',
			(int) 4 => 'FC001G01920',
			(int) 5 => 'FC019G00800'
		),
		'hsp' => array(
			(int) 0 => 'HE0000G49400',
			(int) 1 => 'HE0000G26650',
			(int) 2 => 'HE0000G57170',
			(int) 3 => 'HE0000G42020'
		),
		'ptri' => array(
			(int) 0 => 'PTI_15G03410',
			(int) 1 => 'PTI_15G02630',
			(int) 2 => 'PTI_18G02800',
			(int) 3 => 'PTI_06G02290'
		),
		'phs' => array(
			(int) 0 => 'phs366730',
			(int) 1 => 'phs196490',
			(int) 2 => 'phs33280',
			(int) 3 => 'phs305450'
		),
		'cnc64a' => array(
			(int) 0 => 'CNC64A_007G03330',
			(int) 1 => 'CNC64A_012G00390',
			(int) 2 => 'CNC64A_007G02290'
		),
		'scp' => array(
			(int) 0 => 'SPBC776.03',
			(int) 1 => 'SPBC19F5.04'
		),
		'emh' => array(
			(int) 0 => 'emh307330',
			(int) 1 => 'emh720040',
			(int) 2 => 'emh176620',
			(int) 3 => 'emh331300',
			(int) 4 => 'emh60350'
		),
		'sac' => array(
			(int) 0 => 'YJR139C',
			(int) 1 => 'YER052C'
		)
	),
	'gene_id' => 'AT1G31230',
	'all_species_index' => array(
		(int) 0 => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333'
		),
		(int) 1 => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702'
		),
		(int) 2 => array(
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'tax_id' => '763042'
		),
		(int) 3 => array(
			'species' => 'aan',
			'common_name' => 'Aureococcus anophagefferens',
			'tax_id' => '44056'
		),
		(int) 4 => array(
			'species' => 'apr',
			'common_name' => 'Auxenochlorella protothecoides',
			'tax_id' => '3075'
		),
		(int) 5 => array(
			'species' => 'bprrcc1105',
			'common_name' => 'Bathycoccus prasinos',
			'tax_id' => '41875'
		),
		(int) 6 => array(
			'species' => 'cel',
			'common_name' => 'Caenorhabditis elegans',
			'tax_id' => '6239'
		),
		(int) 7 => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055'
		),
		(int) 8 => array(
			'species' => 'cnc64a',
			'common_name' => 'Chlorella sp NC64A',
			'tax_id' => '310507'
		),
		(int) 9 => array(
			'species' => 'ccr',
			'common_name' => 'Chondrus crispus',
			'tax_id' => '2769'
		),
		(int) 10 => array(
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'tax_id' => '574566'
		),
		(int) 11 => array(
			'species' => 'cme',
			'common_name' => 'Cyanidioschyzon merolae',
			'tax_id' => '45157'
		),
		(int) 12 => array(
			'species' => 'ddi',
			'common_name' => 'Dictyostelium discoideum',
			'tax_id' => '44689'
		),
		(int) 13 => array(
			'species' => 'drm',
			'common_name' => 'Drosophila melanogaster',
			'tax_id' => '7227'
		),
		(int) 14 => array(
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'tax_id' => '2880'
		),
		(int) 15 => array(
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'tax_id' => '280463'
		),
		(int) 16 => array(
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'tax_id' => '186039'
		),
		(int) 17 => array(
			'species' => 'gsu',
			'common_name' => 'Galdieria sulphuraria',
			'tax_id' => '130081'
		),
		(int) 18 => array(
			'species' => 'hsp',
			'common_name' => 'Helicosporidium sp. ',
			'tax_id' => '145475'
		),
		(int) 19 => array(
			'species' => 'hom',
			'common_name' => 'Homo sapiens',
			'tax_id' => '9606'
		),
		(int) 20 => array(
			'species' => 'mpu',
			'common_name' => 'Micromonas pusilla strain CCMP1545',
			'tax_id' => '564608'
		),
		(int) 21 => array(
			'species' => 'mrcc299',
			'common_name' => 'Micromonas sp RCC299',
			'tax_id' => '296587'
		),
		(int) 22 => array(
			'species' => 'mus',
			'common_name' => 'Mus musculus',
			'tax_id' => '10090'
		),
		(int) 23 => array(
			'species' => 'nga',
			'common_name' => 'Nannochloropsis gaditana',
			'tax_id' => '72520'
		),
		(int) 24 => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'tax_id' => '4530'
		),
		(int) 25 => array(
			'species' => 'olu',
			'common_name' => 'Ostreococcus lucimarinus',
			'tax_id' => '242159'
		),
		(int) 26 => array(
			'species' => 'ome',
			'common_name' => 'Ostreococcus mediterraneus',
			'tax_id' => '1486918'
		),
		(int) 27 => array(
			'species' => 'orcc809',
			'common_name' => 'Ostreococcus sp RCC809',
			'tax_id' => '385169'
		),
		(int) 28 => array(
			'species' => 'ota',
			'common_name' => 'Ostreococcus tauri',
			'tax_id' => '70448'
		),
		(int) 29 => array(
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'tax_id' => '5888'
		),
		(int) 30 => array(
			'species' => 'ptri',
			'common_name' => 'Phaeodactylum tricornutum',
			'tax_id' => '2850'
		),
		(int) 31 => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'tax_id' => '3218'
		),
		(int) 32 => array(
			'species' => 'phs',
			'common_name' => 'Phytophtora sojae',
			'tax_id' => '67593'
		),
		(int) 33 => array(
			'species' => 'pse3',
			'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
			'tax_id' => '1470871'
		),
		(int) 34 => array(
			'species' => 'prcc4223',
			'common_name' => 'Picochlorum_RCC4223',
			'tax_id' => '249344'
		),
		(int) 35 => array(
			'species' => 'sac',
			'common_name' => 'Saccharomyces cerevisiae strain S288C',
			'tax_id' => '4932'
		),
		(int) 36 => array(
			'species' => 'scp',
			'common_name' => 'Schizosaccharomyces pombe',
			'tax_id' => '4896'
		),
		(int) 37 => array(
			'species' => 'tps',
			'common_name' => 'Thalassiosira pseudonana',
			'tax_id' => '35128'
		),
		(int) 38 => array(
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'tax_id' => '3067'
		)
	),
	'all_species' => array(
		'atr' => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333'
		),
		'ath' => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702'
		),
		'acg' => array(
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'tax_id' => '763042'
		),
		'aan' => array(
			'species' => 'aan',
			'common_name' => 'Aureococcus anophagefferens',
			'tax_id' => '44056'
		),
		'apr' => array(
			'species' => 'apr',
			'common_name' => 'Auxenochlorella protothecoides',
			'tax_id' => '3075'
		),
		'bprrcc1105' => array(
			'species' => 'bprrcc1105',
			'common_name' => 'Bathycoccus prasinos',
			'tax_id' => '41875'
		),
		'cel' => array(
			'species' => 'cel',
			'common_name' => 'Caenorhabditis elegans',
			'tax_id' => '6239'
		),
		'cre' => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055'
		),
		'cnc64a' => array(
			'species' => 'cnc64a',
			'common_name' => 'Chlorella sp NC64A',
			'tax_id' => '310507'
		),
		'ccr' => array(
			'species' => 'ccr',
			'common_name' => 'Chondrus crispus',
			'tax_id' => '2769'
		),
		'cvu' => array(
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'tax_id' => '574566'
		),
		'cme' => array(
			'species' => 'cme',
			'common_name' => 'Cyanidioschyzon merolae',
			'tax_id' => '45157'
		),
		'ddi' => array(
			'species' => 'ddi',
			'common_name' => 'Dictyostelium discoideum',
			'tax_id' => '44689'
		),
		'drm' => array(
			'species' => 'drm',
			'common_name' => 'Drosophila melanogaster',
			'tax_id' => '7227'
		),
		'esi' => array(
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'tax_id' => '2880'
		),
		'emh' => array(
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'tax_id' => '280463'
		),
		'fcy' => array(
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'tax_id' => '186039'
		),
		'gsu' => array(
			'species' => 'gsu',
			'common_name' => 'Galdieria sulphuraria',
			'tax_id' => '130081'
		),
		'hsp' => array(
			'species' => 'hsp',
			'common_name' => 'Helicosporidium sp. ',
			'tax_id' => '145475'
		),
		'hom' => array(
			'species' => 'hom',
			'common_name' => 'Homo sapiens',
			'tax_id' => '9606'
		),
		'mpu' => array(
			'species' => 'mpu',
			'common_name' => 'Micromonas pusilla strain CCMP1545',
			'tax_id' => '564608'
		),
		'mrcc299' => array(
			'species' => 'mrcc299',
			'common_name' => 'Micromonas sp RCC299',
			'tax_id' => '296587'
		),
		'mus' => array(
			'species' => 'mus',
			'common_name' => 'Mus musculus',
			'tax_id' => '10090'
		),
		'nga' => array(
			'species' => 'nga',
			'common_name' => 'Nannochloropsis gaditana',
			'tax_id' => '72520'
		),
		'osa' => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'tax_id' => '4530'
		),
		'olu' => array(
			'species' => 'olu',
			'common_name' => 'Ostreococcus lucimarinus',
			'tax_id' => '242159'
		),
		'ome' => array(
			'species' => 'ome',
			'common_name' => 'Ostreococcus mediterraneus',
			'tax_id' => '1486918'
		),
		'orcc809' => array(
			'species' => 'orcc809',
			'common_name' => 'Ostreococcus sp RCC809',
			'tax_id' => '385169'
		),
		'ota' => array(
			'species' => 'ota',
			'common_name' => 'Ostreococcus tauri',
			'tax_id' => '70448'
		),
		'pte' => array(
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'tax_id' => '5888'
		),
		'ptri' => array(
			'species' => 'ptri',
			'common_name' => 'Phaeodactylum tricornutum',
			'tax_id' => '2850'
		),
		'ppa' => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'tax_id' => '3218'
		),
		'phs' => array(
			'species' => 'phs',
			'common_name' => 'Phytophtora sojae',
			'tax_id' => '67593'
		),
		'pse3' => array(
			'species' => 'pse3',
			'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
			'tax_id' => '1470871'
		),
		'prcc4223' => array(
			'species' => 'prcc4223',
			'common_name' => 'Picochlorum_RCC4223',
			'tax_id' => '249344'
		),
		'sac' => array(
			'species' => 'sac',
			'common_name' => 'Saccharomyces cerevisiae strain S288C',
			'tax_id' => '4932'
		),
		'scp' => array(
			'species' => 'scp',
			'common_name' => 'Schizosaccharomyces pombe',
			'tax_id' => '4896'
		),
		'tps' => array(
			'species' => 'tps',
			'common_name' => 'Thalassiosira pseudonana',
			'tax_id' => '35128'
		),
		'vca' => array(
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'tax_id' => '3067'
		)
	),
	'gene_family_types_information' => array(
		'HOMFAM' => array(
			'id' => 'HOMFAM',
			'name' => 'Homologous gene family',
			'prefix' => 'HOM',
			'gene_type' => 'coding',
			'method' => '{}',
			'ancestry' => 'homology',
			'parent_id' => ''
		),
		'ORTHOFAM' => array(
			'id' => 'ORTHOFAM',
			'name' => 'Orthologous gene family',
			'prefix' => 'ORTH',
			'gene_type' => 'coding',
			'method' => '{}',
			'ancestry' => 'orthology',
			'parent_id' => 'HOMFAM'
		)
	),
	'gene_family_types_configuration' => array(),
	'data_identifier' => 'AT1G31230',
	'data_type' => 'gene_id',
	'allow_async_use' => true,
	'gene_placeholder' => 'PP00006G00240',
	'gf_placeholder' => 'HOM03P013870',
	'title_for_layout' => 'Pico-PLAZA 3.0 : Interactive Phylogenetics Module'
)
$allowed_extra_sequences_types = array(
	'aa' => 'Protein',
	'dna' => 'DNA'
)
$allowed_editing_methods = array(
	'column' => 'Positions only',
	'row' => 'Genes only',
	'column_row' => 'Positions and Genes',
	'none' => 'No editing'
)
$allowed_tree_programs = array(
	'fasttree' => 'FastTree',
	'iqtree' => 'IQ-TREE (includes model testing)',
	'raxml' => 'RAxML',
	'phyml' => 'PhyML'
)
$allowed_msa_programs = array(
	'muscle' => 'MUSCLE',
	'mafft' => 'MAFFT'
)
$allowed_number_blasthits = array(
	(int) 0 => 'all',
	(int) 1 => (int) 20,
	(int) 2 => (int) 10,
	(int) 3 => (int) 5,
	(int) 4 => (int) 1
)
$similarity_hits_genes = array(
	'AT1G31230' => array(
		'gene_id' => 'AT1G31230',
		'e_value' => '0.0',
		'bit_score' => '1873',
		'alignment_length' => '912',
		'identity_percentage' => '100.00',
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'AT4G19710' => array(
		'gene_id' => 'AT4G19710',
		'e_value' => '0.0',
		'bit_score' => '1449',
		'alignment_length' => '850',
		'identity_percentage' => '81.06',
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'ATR_00002G04450' => array(
		'gene_id' => 'ATR_00002G04450',
		'e_value' => '0.0',
		'bit_score' => '1425',
		'alignment_length' => '872',
		'identity_percentage' => '77.98',
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'OS08G25390' => array(
		'gene_id' => 'OS08G25390',
		'e_value' => '0.0',
		'bit_score' => '1352',
		'alignment_length' => '856',
		'identity_percentage' => '74.30',
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'OS09G12290' => array(
		'gene_id' => 'OS09G12290',
		'e_value' => '0.0',
		'bit_score' => '1323',
		'alignment_length' => '891',
		'identity_percentage' => '71.83',
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'PP00088G00350' => array(
		'gene_id' => 'PP00088G00350',
		'e_value' => '0.0',
		'bit_score' => '1213',
		'alignment_length' => '882',
		'identity_percentage' => '66.44',
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'PP00194G00960' => array(
		'gene_id' => 'PP00194G00960',
		'e_value' => '0.0',
		'bit_score' => '1182',
		'alignment_length' => '887',
		'identity_percentage' => '65.39',
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'CV00G86690' => array(
		'gene_id' => 'CV00G86690',
		'e_value' => '0.0',
		'bit_score' => '1026',
		'alignment_length' => '837',
		'identity_percentage' => '62.01',
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'VC00G129980' => array(
		'gene_id' => 'VC00G129980',
		'e_value' => '0.0',
		'bit_score' => '1005',
		'alignment_length' => '845',
		'identity_percentage' => '58.34',
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'OM_10G03330' => array(
		'gene_id' => 'OM_10G03330',
		'e_value' => '0.0',
		'bit_score' => '1004',
		'alignment_length' => '857',
		'identity_percentage' => '57.29',
		'species' => 'ome',
		'common_name' => 'Ostreococcus mediterraneus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'CR00G02160' => array(
		'gene_id' => 'CR00G02160',
		'e_value' => '0.0',
		'bit_score' => '1003',
		'alignment_length' => '846',
		'identity_percentage' => '58.27',
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'OT_09G03630' => array(
		'gene_id' => 'OT_09G03630',
		'e_value' => '0.0',
		'bit_score' => '986',
		'alignment_length' => '862',
		'identity_percentage' => '55.57',
		'species' => 'ota',
		'common_name' => 'Ostreococcus tauri',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'MRCC299_14G01700' => array(
		'gene_id' => 'MRCC299_14G01700',
		'e_value' => '0.0',
		'bit_score' => '965',
		'alignment_length' => '862',
		'identity_percentage' => '55.92',
		'species' => 'mrcc299',
		'common_name' => 'Micromonas sp RCC299',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'PI00G37250' => array(
		'gene_id' => 'PI00G37250',
		'e_value' => '0.0',
		'bit_score' => '959',
		'alignment_length' => '847',
		'identity_percentage' => '56.67',
		'species' => 'pse3',
		'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'RCC4223.01g10830' => array(
		'gene_id' => 'RCC4223.01g10830',
		'e_value' => '0.0',
		'bit_score' => '959',
		'alignment_length' => '847',
		'identity_percentage' => '56.91',
		'species' => 'prcc4223',
		'common_name' => 'Picochlorum_RCC4223',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'AC00G36650' => array(
		'gene_id' => 'AC00G36650',
		'e_value' => '0.0',
		'bit_score' => '954',
		'alignment_length' => '874',
		'identity_percentage' => '54.81',
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'BPRRCC1105_10G00930' => array(
		'gene_id' => 'BPRRCC1105_10G00930',
		'e_value' => '0.0',
		'bit_score' => '945',
		'alignment_length' => '870',
		'identity_percentage' => '54.71',
		'species' => 'bprrcc1105',
		'common_name' => 'Bathycoccus prasinos',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'ORCC809_09G02760' => array(
		'gene_id' => 'ORCC809_09G02760',
		'e_value' => '0.0',
		'bit_score' => '924',
		'alignment_length' => '814',
		'identity_percentage' => '55.65',
		'species' => 'orcc809',
		'common_name' => 'Ostreococcus sp RCC809',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'OL09G03300' => array(
		'gene_id' => 'OL09G03300',
		'e_value' => '0.0',
		'bit_score' => '923',
		'alignment_length' => '811',
		'identity_percentage' => '55.24',
		'species' => 'olu',
		'common_name' => 'Ostreococcus lucimarinus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'MP03G02270' => array(
		'gene_id' => 'MP03G02270',
		'e_value' => '0.0',
		'bit_score' => '918',
		'alignment_length' => '864',
		'identity_percentage' => '53.59',
		'species' => 'mpu',
		'common_name' => 'Micromonas pusilla strain CCMP1545',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'gsu43680' => array(
		'gene_id' => 'gsu43680',
		'e_value' => '0.0',
		'bit_score' => '779',
		'alignment_length' => '926',
		'identity_percentage' => '43.95',
		'species' => 'gsu',
		'common_name' => 'Galdieria sulphuraria',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'ccr145620' => array(
		'gene_id' => 'ccr145620',
		'e_value' => '0.0',
		'bit_score' => '753',
		'alignment_length' => '805',
		'identity_percentage' => '49.44',
		'species' => 'ccr',
		'common_name' => 'Chondrus crispus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'CM14G01290' => array(
		'gene_id' => 'CM14G01290',
		'e_value' => '0.0',
		'bit_score' => '753',
		'alignment_length' => '909',
		'identity_percentage' => '44.44',
		'species' => 'cme',
		'common_name' => 'Cyanidioschyzon merolae',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'AP00G64590' => array(
		'gene_id' => 'AP00G64590',
		'e_value' => '0.0',
		'bit_score' => '742',
		'alignment_length' => '803',
		'identity_percentage' => '48.82',
		'species' => 'apr',
		'common_name' => 'Auxenochlorella protothecoides',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'RCC4223.101g00020' => array(
		'gene_id' => 'RCC4223.101g00020',
		'e_value' => '0.0',
		'bit_score' => '569',
		'alignment_length' => '827',
		'identity_percentage' => '37.00',
		'species' => 'prcc4223',
		'common_name' => 'Picochlorum_RCC4223',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P077083'
		)
	),
	'TP07G05850' => array(
		'gene_id' => 'TP07G05850',
		'e_value' => '2e-178',
		'bit_score' => '548',
		'alignment_length' => '847',
		'identity_percentage' => '36.36',
		'species' => 'tps',
		'common_name' => 'Thalassiosira pseudonana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'Naga_100001g91' => array(
		'gene_id' => 'Naga_100001g91',
		'e_value' => '1e-175',
		'bit_score' => '540',
		'alignment_length' => '889',
		'identity_percentage' => '36.33',
		'species' => 'nga',
		'common_name' => 'Nannochloropsis gaditana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'PP00169G00390' => array(
		'gene_id' => 'PP00169G00390',
		'e_value' => '5e-169',
		'bit_score' => '514',
		'alignment_length' => '462',
		'identity_percentage' => '55.63',
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'AA0025G00710' => array(
		'gene_id' => 'AA0025G00710',
		'e_value' => '5e-169',
		'bit_score' => '521',
		'alignment_length' => '883',
		'identity_percentage' => '35.79',
		'species' => 'aan',
		'common_name' => 'Aureococcus anophagefferens',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'PP00088G00320' => array(
		'gene_id' => 'PP00088G00320',
		'e_value' => '6e-167',
		'bit_score' => '498',
		'alignment_length' => '365',
		'identity_percentage' => '63.29',
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'ES0102G00310' => array(
		'gene_id' => 'ES0102G00310',
		'e_value' => '4e-166',
		'bit_score' => '516',
		'alignment_length' => '911',
		'identity_percentage' => '35.68',
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'FC001G02950' => array(
		'gene_id' => 'FC001G02950',
		'e_value' => '1e-165',
		'bit_score' => '514',
		'alignment_length' => '884',
		'identity_percentage' => '34.73',
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'HE0000G49400' => array(
		'gene_id' => 'HE0000G49400',
		'e_value' => '6e-160',
		'bit_score' => '482',
		'alignment_length' => '422',
		'identity_percentage' => '56.40',
		'species' => 'hsp',
		'common_name' => 'Helicosporidium sp. ',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'PTI_15G03410' => array(
		'gene_id' => 'PTI_15G03410',
		'e_value' => '5e-151',
		'bit_score' => '478',
		'alignment_length' => '943',
		'identity_percentage' => '34.25',
		'species' => 'ptri',
		'common_name' => 'Phaeodactylum tricornutum',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'FC013G03010' => array(
		'gene_id' => 'FC013G03010',
		'e_value' => '6e-150',
		'bit_score' => '472',
		'alignment_length' => '871',
		'identity_percentage' => '36.39',
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'phs366730' => array(
		'gene_id' => 'phs366730',
		'e_value' => '2e-148',
		'bit_score' => '474',
		'alignment_length' => '878',
		'identity_percentage' => '34.85',
		'species' => 'phs',
		'common_name' => 'Phytophtora sojae',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'CV00G87360' => array(
		'gene_id' => 'CV00G87360',
		'e_value' => '1e-127',
		'bit_score' => '396',
		'alignment_length' => '360',
		'identity_percentage' => '52.50',
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P010917'
		)
	),
	'CR02G09240' => array(
		'gene_id' => 'CR02G09240',
		'e_value' => '3e-116',
		'bit_score' => '367',
		'alignment_length' => '362',
		'identity_percentage' => '52.49',
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P067219'
		)
	),
	'CNC64A_007G03330' => array(
		'gene_id' => 'CNC64A_007G03330',
		'e_value' => '7e-116',
		'bit_score' => '366',
		'alignment_length' => '383',
		'identity_percentage' => '47.52',
		'species' => 'cnc64a',
		'common_name' => 'Chlorella sp NC64A',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P010917'
		)
	),
	'AC00G92770' => array(
		'gene_id' => 'AC00G92770',
		'e_value' => '8e-116',
		'bit_score' => '364',
		'alignment_length' => '324',
		'identity_percentage' => '55.86',
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P010917'
		)
	),
	'VC00G12880' => array(
		'gene_id' => 'VC00G12880',
		'e_value' => '2e-109',
		'bit_score' => '349',
		'alignment_length' => '369',
		'identity_percentage' => '48.51',
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P067219'
		)
	),
	'HE0000G26650' => array(
		'gene_id' => 'HE0000G26650',
		'e_value' => '4e-109',
		'bit_score' => '348',
		'alignment_length' => '363',
		'identity_percentage' => '49.59',
		'species' => 'hsp',
		'common_name' => 'Helicosporidium sp. ',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P010917'
		)
	),
	'AP00G26920' => array(
		'gene_id' => 'AP00G26920',
		'e_value' => '5e-109',
		'bit_score' => '347',
		'alignment_length' => '371',
		'identity_percentage' => '49.06',
		'species' => 'apr',
		'common_name' => 'Auxenochlorella protothecoides',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P010917'
		)
	),
	'PI00G41930' => array(
		'gene_id' => 'PI00G41930',
		'e_value' => '2e-107',
		'bit_score' => '343',
		'alignment_length' => '357',
		'identity_percentage' => '47.06',
		'species' => 'pse3',
		'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P010917'
		)
	),
	'RCC4223.14g02260' => array(
		'gene_id' => 'RCC4223.14g02260',
		'e_value' => '3e-103',
		'bit_score' => '332',
		'alignment_length' => '360',
		'identity_percentage' => '45.56',
		'species' => 'prcc4223',
		'common_name' => 'Picochlorum_RCC4223',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P010917'
		)
	),
	'MRCC299_10G00940' => array(
		'gene_id' => 'MRCC299_10G00940',
		'e_value' => '1e-92',
		'bit_score' => '305',
		'alignment_length' => '382',
		'identity_percentage' => '45.29',
		'species' => 'mrcc299',
		'common_name' => 'Micromonas sp RCC299',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P016720'
		)
	),
	'MP13G03550' => array(
		'gene_id' => 'MP13G03550',
		'e_value' => '6e-87',
		'bit_score' => '291',
		'alignment_length' => '393',
		'identity_percentage' => '43.77',
		'species' => 'mpu',
		'common_name' => 'Micromonas pusilla strain CCMP1545',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P016720'
		)
	),
	'SPBC776.03' => array(
		'gene_id' => 'SPBC776.03',
		'e_value' => '3e-85',
		'bit_score' => '284',
		'alignment_length' => '340',
		'identity_percentage' => '44.71',
		'species' => 'scp',
		'common_name' => 'Schizosaccharomyces pombe',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'OM_03G05220' => array(
		'gene_id' => 'OM_03G05220',
		'e_value' => '6e-85',
		'bit_score' => '283',
		'alignment_length' => '362',
		'identity_percentage' => '41.99',
		'species' => 'ome',
		'common_name' => 'Ostreococcus mediterraneus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P016720'
		)
	),
	'OT_05G05110' => array(
		'gene_id' => 'OT_05G05110',
		'e_value' => '1e-83',
		'bit_score' => '279',
		'alignment_length' => '270',
		'identity_percentage' => '50.37',
		'species' => 'ota',
		'common_name' => 'Ostreococcus tauri',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P016720'
		)
	),
	'ORCC809_05G04850' => array(
		'gene_id' => 'ORCC809_05G04850',
		'e_value' => '3e-81',
		'bit_score' => '273',
		'alignment_length' => '271',
		'identity_percentage' => '50.55',
		'species' => 'orcc809',
		'common_name' => 'Ostreococcus sp RCC809',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P016720'
		)
	),
	'phs196490' => array(
		'gene_id' => 'phs196490',
		'e_value' => '3e-79',
		'bit_score' => '281',
		'alignment_length' => '880',
		'identity_percentage' => '25.80',
		'species' => 'phs',
		'common_name' => 'Phytophtora sojae',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P118771'
		)
	),
	'emh307330' => array(
		'gene_id' => 'emh307330',
		'e_value' => '2e-75',
		'bit_score' => '270',
		'alignment_length' => '488',
		'identity_percentage' => '34.43',
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'OL05G04900' => array(
		'gene_id' => 'OL05G04900',
		'e_value' => '1e-71',
		'bit_score' => '244',
		'alignment_length' => '275',
		'identity_percentage' => '51.64',
		'species' => 'olu',
		'common_name' => 'Ostreococcus lucimarinus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P016720'
		)
	),
	'YJR139C' => array(
		'gene_id' => 'YJR139C',
		'e_value' => '4e-71',
		'bit_score' => '245',
		'alignment_length' => '367',
		'identity_percentage' => '40.60',
		'species' => 'sac',
		'common_name' => 'Saccharomyces cerevisiae strain S288C',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P010917'
		)
	),
	'BPRRCC1105_15G00250' => array(
		'gene_id' => 'BPRRCC1105_15G00250',
		'e_value' => '2e-64',
		'bit_score' => '229',
		'alignment_length' => '276',
		'identity_percentage' => '48.19',
		'species' => 'bprrcc1105',
		'common_name' => 'Bathycoccus prasinos',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P111978'
		)
	),
	'FC005G03510' => array(
		'gene_id' => 'FC005G03510',
		'e_value' => '3e-60',
		'bit_score' => '212',
		'alignment_length' => '286',
		'identity_percentage' => '40.56',
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P077069'
		)
	),
	'OS12G03190' => array(
		'gene_id' => 'OS12G03190',
		'e_value' => '2e-49',
		'bit_score' => '184',
		'alignment_length' => '378',
		'identity_percentage' => '32.28',
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P013981'
		)
	),
	'ATR_00119G01000' => array(
		'gene_id' => 'ATR_00119G01000',
		'e_value' => '3e-49',
		'bit_score' => '183',
		'alignment_length' => '271',
		'identity_percentage' => '40.22',
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P013981'
		)
	),
	'Naga_100004g167' => array(
		'gene_id' => 'Naga_100004g167',
		'e_value' => '6e-49',
		'bit_score' => '187',
		'alignment_length' => '471',
		'identity_percentage' => '29.30',
		'species' => 'nga',
		'common_name' => 'Nannochloropsis gaditana',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'PP00286G00200' => array(
		'gene_id' => 'PP00286G00200',
		'e_value' => '2e-48',
		'bit_score' => '186',
		'alignment_length' => '479',
		'identity_percentage' => '27.14',
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'AT5G21060' => array(
		'gene_id' => 'AT5G21060',
		'e_value' => '4e-47',
		'bit_score' => '177',
		'alignment_length' => '266',
		'identity_percentage' => '36.84',
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P013981'
		)
	),
	'AT3G02020' => array(
		'gene_id' => 'AT3G02020',
		'e_value' => '6e-46',
		'bit_score' => '178',
		'alignment_length' => '550',
		'identity_percentage' => '27.27',
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'AA0008G00380' => array(
		'gene_id' => 'AA0008G00380',
		'e_value' => '1e-45',
		'bit_score' => '173',
		'alignment_length' => '356',
		'identity_percentage' => '37.08',
		'species' => 'aan',
		'common_name' => 'Aureococcus anophagefferens',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P013981'
		)
	),
	'OS07G20544' => array(
		'gene_id' => 'OS07G20544',
		'e_value' => '3e-45',
		'bit_score' => '176',
		'alignment_length' => '479',
		'identity_percentage' => '29.02',
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'ccr178580' => array(
		'gene_id' => 'ccr178580',
		'e_value' => '3e-45',
		'bit_score' => '177',
		'alignment_length' => '485',
		'identity_percentage' => '28.04',
		'species' => 'ccr',
		'common_name' => 'Chondrus crispus',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'OS11G03470' => array(
		'gene_id' => 'OS11G03470',
		'e_value' => '1e-44',
		'bit_score' => '171',
		'alignment_length' => '389',
		'identity_percentage' => '31.88',
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P013981'
		)
	),
	'PP00162G00320' => array(
		'gene_id' => 'PP00162G00320',
		'e_value' => '1e-44',
		'bit_score' => '175',
		'alignment_length' => '479',
		'identity_percentage' => '25.89',
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'CM10G00160' => array(
		'gene_id' => 'CM10G00160',
		'e_value' => '1e-44',
		'bit_score' => '175',
		'alignment_length' => '472',
		'identity_percentage' => '29.45',
		'species' => 'cme',
		'common_name' => 'Cyanidioschyzon merolae',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'CV00G51230' => array(
		'gene_id' => 'CV00G51230',
		'e_value' => '3e-44',
		'bit_score' => '171',
		'alignment_length' => '476',
		'identity_percentage' => '27.94',
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'OS01G70300' => array(
		'gene_id' => 'OS01G70300',
		'e_value' => '3e-44',
		'bit_score' => '173',
		'alignment_length' => '471',
		'identity_percentage' => '26.75',
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'AT5G14060' => array(
		'gene_id' => 'AT5G14060',
		'e_value' => '5e-44',
		'bit_score' => '172',
		'alignment_length' => '475',
		'identity_percentage' => '26.32',
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'MRCC299_01G04440' => array(
		'gene_id' => 'MRCC299_01G04440',
		'e_value' => '6e-44',
		'bit_score' => '171',
		'alignment_length' => '482',
		'identity_percentage' => '28.42',
		'species' => 'mrcc299',
		'common_name' => 'Micromonas sp RCC299',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'OS03G63330' => array(
		'gene_id' => 'OS03G63330',
		'e_value' => '9e-44',
		'bit_score' => '172',
		'alignment_length' => '479',
		'identity_percentage' => '27.97',
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'PTI_15G02630' => array(
		'gene_id' => 'PTI_15G02630',
		'e_value' => '1e-43',
		'bit_score' => '171',
		'alignment_length' => '474',
		'identity_percentage' => '29.75',
		'species' => 'ptri',
		'common_name' => 'Phaeodactylum tricornutum',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'gsu111270' => array(
		'gene_id' => 'gsu111270',
		'e_value' => '2e-43',
		'bit_score' => '170',
		'alignment_length' => '484',
		'identity_percentage' => '29.75',
		'species' => 'gsu',
		'common_name' => 'Galdieria sulphuraria',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'OL01G01670' => array(
		'gene_id' => 'OL01G01670',
		'e_value' => '4e-43',
		'bit_score' => '168',
		'alignment_length' => '477',
		'identity_percentage' => '27.25',
		'species' => 'olu',
		'common_name' => 'Ostreococcus lucimarinus',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'YER052C' => array(
		'gene_id' => 'YER052C',
		'e_value' => '5e-42',
		'bit_score' => '166',
		'alignment_length' => '504',
		'identity_percentage' => '27.78',
		'species' => 'sac',
		'common_name' => 'Saccharomyces cerevisiae strain S288C',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'MP05G06920' => array(
		'gene_id' => 'MP05G06920',
		'e_value' => '1e-41',
		'bit_score' => '166',
		'alignment_length' => '479',
		'identity_percentage' => '27.97',
		'species' => 'mpu',
		'common_name' => 'Micromonas pusilla strain CCMP1545',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'SPBC19F5.04' => array(
		'gene_id' => 'SPBC19F5.04',
		'e_value' => '1e-41',
		'bit_score' => '165',
		'alignment_length' => '497',
		'identity_percentage' => '26.56',
		'species' => 'scp',
		'common_name' => 'Schizosaccharomyces pombe',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'RCC4223.16g01430' => array(
		'gene_id' => 'RCC4223.16g01430',
		'e_value' => '2e-41',
		'bit_score' => '165',
		'alignment_length' => '525',
		'identity_percentage' => '28.38',
		'species' => 'prcc4223',
		'common_name' => 'Picochlorum_RCC4223',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'AT5G13280' => array(
		'gene_id' => 'AT5G13280',
		'e_value' => '2e-41',
		'bit_score' => '165',
		'alignment_length' => '486',
		'identity_percentage' => '27.16',
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'BPRRCC1105_01G01500' => array(
		'gene_id' => 'BPRRCC1105_01G01500',
		'e_value' => '3e-41',
		'bit_score' => '164',
		'alignment_length' => '505',
		'identity_percentage' => '26.14',
		'species' => 'bprrcc1105',
		'common_name' => 'Bathycoccus prasinos',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'PI00G67540' => array(
		'gene_id' => 'PI00G67540',
		'e_value' => '3e-41',
		'bit_score' => '164',
		'alignment_length' => '483',
		'identity_percentage' => '28.57',
		'species' => 'pse3',
		'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'ORCC809_01G04970' => array(
		'gene_id' => 'ORCC809_01G04970',
		'e_value' => '4e-41',
		'bit_score' => '162',
		'alignment_length' => '475',
		'identity_percentage' => '26.11',
		'species' => 'orcc809',
		'common_name' => 'Ostreococcus sp RCC809',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'CR10G08860' => array(
		'gene_id' => 'CR10G08860',
		'e_value' => '4e-41',
		'bit_score' => '164',
		'alignment_length' => '474',
		'identity_percentage' => '28.06',
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'phs33280' => array(
		'gene_id' => 'phs33280',
		'e_value' => '5e-41',
		'bit_score' => '164',
		'alignment_length' => '521',
		'identity_percentage' => '25.14',
		'species' => 'phs',
		'common_name' => 'Phytophtora sojae',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'AC00G81870' => array(
		'gene_id' => 'AC00G81870',
		'e_value' => '1e-39',
		'bit_score' => '158',
		'alignment_length' => '477',
		'identity_percentage' => '27.88',
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'OM_01G05500' => array(
		'gene_id' => 'OM_01G05500',
		'e_value' => '1e-39',
		'bit_score' => '159',
		'alignment_length' => '483',
		'identity_percentage' => '27.12',
		'species' => 'ome',
		'common_name' => 'Ostreococcus mediterraneus',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'ES0330G00020' => array(
		'gene_id' => 'ES0330G00020',
		'e_value' => '3e-39',
		'bit_score' => '157',
		'alignment_length' => '309',
		'identity_percentage' => '31.72',
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'FC012G00090' => array(
		'gene_id' => 'FC012G00090',
		'e_value' => '3e-39',
		'bit_score' => '156',
		'alignment_length' => '476',
		'identity_percentage' => '28.15',
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'OT_01G01430' => array(
		'gene_id' => 'OT_01G01430',
		'e_value' => '1e-38',
		'bit_score' => '156',
		'alignment_length' => '492',
		'identity_percentage' => '27.44',
		'species' => 'ota',
		'common_name' => 'Ostreococcus tauri',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'AP00G51660' => array(
		'gene_id' => 'AP00G51660',
		'e_value' => '4e-38',
		'bit_score' => '154',
		'alignment_length' => '485',
		'identity_percentage' => '26.60',
		'species' => 'apr',
		'common_name' => 'Auxenochlorella protothecoides',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'AA0005G02200' => array(
		'gene_id' => 'AA0005G02200',
		'e_value' => '7e-38',
		'bit_score' => '154',
		'alignment_length' => '485',
		'identity_percentage' => '27.01',
		'species' => 'aan',
		'common_name' => 'Aureococcus anophagefferens',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'CNC64A_012G00390' => array(
		'gene_id' => 'CNC64A_012G00390',
		'e_value' => '7e-36',
		'bit_score' => '147',
		'alignment_length' => '484',
		'identity_percentage' => '27.27',
		'species' => 'cnc64a',
		'common_name' => 'Chlorella sp NC64A',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'emh720040' => array(
		'gene_id' => 'emh720040',
		'e_value' => '3e-35',
		'bit_score' => '144',
		'alignment_length' => '375',
		'identity_percentage' => '32.80',
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P013981'
		)
	),
	'VC00G32420' => array(
		'gene_id' => 'VC00G32420',
		'e_value' => '2e-34',
		'bit_score' => '144',
		'alignment_length' => '472',
		'identity_percentage' => '26.06',
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'ATR_00016G01260' => array(
		'gene_id' => 'ATR_00016G01260',
		'e_value' => '2e-34',
		'bit_score' => '142',
		'alignment_length' => '380',
		'identity_percentage' => '29.21',
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'emh176620' => array(
		'gene_id' => 'emh176620',
		'e_value' => '2e-30',
		'bit_score' => '130',
		'alignment_length' => '520',
		'identity_percentage' => '26.54',
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'emh331300' => array(
		'gene_id' => 'emh331300',
		'e_value' => '1e-29',
		'bit_score' => '128',
		'alignment_length' => '512',
		'identity_percentage' => '26.37',
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'emh60350' => array(
		'gene_id' => 'emh60350',
		'e_value' => '2e-29',
		'bit_score' => '123',
		'alignment_length' => '200',
		'identity_percentage' => '38.00',
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P152272'
		)
	),
	'HE0000G57170' => array(
		'gene_id' => 'HE0000G57170',
		'e_value' => '7e-27',
		'bit_score' => '119',
		'alignment_length' => '516',
		'identity_percentage' => '24.61',
		'species' => 'hsp',
		'common_name' => 'Helicosporidium sp. ',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'CNC64A_383G00010' => array(
		'gene_id' => 'CNC64A_383G00010',
		'e_value' => '1e-25',
		'bit_score' => '106',
		'alignment_length' => '58',
		'identity_percentage' => '84.48',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P095951'
		)
	),
	'OS09G21490' => array(
		'gene_id' => 'OS09G21490',
		'e_value' => '4e-23',
		'bit_score' => '104',
		'alignment_length' => '83',
		'identity_percentage' => '63.86',
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P167496'
		)
	),
	'PP04335G00010' => array(
		'gene_id' => 'PP04335G00010',
		'e_value' => '7e-20',
		'bit_score' => '94.7',
		'alignment_length' => '273',
		'identity_percentage' => '30.40',
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P084806'
		)
	),
	'phs305450' => array(
		'gene_id' => 'phs305450',
		'e_value' => '5e-18',
		'bit_score' => '91.7',
		'alignment_length' => '375',
		'identity_percentage' => '25.87',
		'species' => 'phs',
		'common_name' => 'Phytophtora sojae',
		'gf' => array(
			'HOMFAM' => 'HOM03P005844',
			'ORTHOFAM' => 'ORTHO03P020840'
		)
	),
	'Naga_100253g6' => array(
		'gene_id' => 'Naga_100253g6',
		'e_value' => '2e-17',
		'bit_score' => '89.7',
		'alignment_length' => '262',
		'identity_percentage' => '27.10',
		'species' => 'nga',
		'common_name' => 'Nannochloropsis gaditana',
		'gf' => array(
			'HOMFAM' => 'HOM03P005844',
			'ORTHOFAM' => 'ORTHO03P020840'
		)
	),
	'ES0018G00110' => array(
		'gene_id' => 'ES0018G00110',
		'e_value' => '3e-16',
		'bit_score' => '87.0',
		'alignment_length' => '290',
		'identity_percentage' => '27.59',
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'gf' => array(
			'HOMFAM' => 'HOM03P005844',
			'ORTHOFAM' => 'ORTHO03P020840'
		)
	),
	'HE0000G42020' => array(
		'gene_id' => 'HE0000G42020',
		'e_value' => '6e-15',
		'bit_score' => '77.0',
		'alignment_length' => '87',
		'identity_percentage' => '44.83',
		'species' => 'hsp',
		'common_name' => 'Helicosporidium sp. ',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P094085'
		)
	),
	'TP08G02140' => array(
		'gene_id' => 'TP08G02140',
		'e_value' => '9e-15',
		'bit_score' => '81.6',
		'alignment_length' => '221',
		'identity_percentage' => '27.60',
		'species' => 'tps',
		'common_name' => 'Thalassiosira pseudonana',
		'gf' => array(
			'HOMFAM' => 'HOM03P005844',
			'ORTHOFAM' => 'ORTHO03P020840'
		)
	),
	'ES0192G00290' => array(
		'gene_id' => 'ES0192G00290',
		'e_value' => '2e-14',
		'bit_score' => '80.5',
		'alignment_length' => '331',
		'identity_percentage' => '26.59',
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'gf' => array(
			'HOMFAM' => 'HOM03P005844',
			'ORTHOFAM' => 'ORTHO03P081280'
		)
	),
	'PTI_18G02800' => array(
		'gene_id' => 'PTI_18G02800',
		'e_value' => '9e-13',
		'bit_score' => '75.5',
		'alignment_length' => '256',
		'identity_percentage' => '28.91',
		'species' => 'ptri',
		'common_name' => 'Phaeodactylum tricornutum',
		'gf' => array(
			'HOMFAM' => 'HOM03P005844',
			'ORTHOFAM' => 'ORTHO03P020840'
		)
	),
	'FC001G01920' => array(
		'gene_id' => 'FC001G01920',
		'e_value' => '3e-11',
		'bit_score' => '70.5',
		'alignment_length' => '256',
		'identity_percentage' => '26.95',
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'gf' => array(
			'HOMFAM' => 'HOM03P005844',
			'ORTHOFAM' => 'ORTHO03P011440'
		)
	),
	'TP05G01890' => array(
		'gene_id' => 'TP05G01890',
		'e_value' => '3e-10',
		'bit_score' => '67.4',
		'alignment_length' => '254',
		'identity_percentage' => '27.17',
		'species' => 'tps',
		'common_name' => 'Thalassiosira pseudonana',
		'gf' => array(
			'HOMFAM' => 'HOM03P005844',
			'ORTHOFAM' => 'ORTHO03P011440'
		)
	),
	'PTI_06G02290' => array(
		'gene_id' => 'PTI_06G02290',
		'e_value' => '3e-09',
		'bit_score' => '64.7',
		'alignment_length' => '257',
		'identity_percentage' => '27.24',
		'species' => 'ptri',
		'common_name' => 'Phaeodactylum tricornutum',
		'gf' => array(
			'HOMFAM' => 'HOM03P005844',
			'ORTHOFAM' => 'ORTHO03P011440'
		)
	),
	'CNC64A_007G02290' => array(
		'gene_id' => 'CNC64A_007G02290',
		'e_value' => '8e-09',
		'bit_score' => '60.5',
		'alignment_length' => '126',
		'identity_percentage' => '30.95',
		'species' => 'cnc64a',
		'common_name' => 'Chlorella sp NC64A',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P140803'
		)
	),
	'FC019G00800' => array(
		'gene_id' => 'FC019G00800',
		'e_value' => '2e-06',
		'bit_score' => '55.5',
		'alignment_length' => '258',
		'identity_percentage' => '24.81',
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'gf' => array(
			'HOMFAM' => 'HOM03P005844',
			'ORTHOFAM' => 'ORTHO03P165818'
		)
	)
)
$similarity_hits_species = array(
	'ath' => array(
		(int) 0 => 'AT1G31230',
		(int) 1 => 'AT4G19710',
		(int) 2 => 'AT5G21060',
		(int) 3 => 'AT3G02020',
		(int) 4 => 'AT5G14060',
		(int) 5 => 'AT5G13280'
	),
	'atr' => array(
		(int) 0 => 'ATR_00002G04450',
		(int) 1 => 'ATR_00119G01000',
		(int) 2 => 'ATR_00016G01260'
	),
	'osa' => array(
		(int) 0 => 'OS08G25390',
		(int) 1 => 'OS09G12290',
		(int) 2 => 'OS12G03190',
		(int) 3 => 'OS07G20544',
		(int) 4 => 'OS11G03470',
		(int) 5 => 'OS01G70300',
		(int) 6 => 'OS03G63330',
		(int) 7 => 'OS09G21490'
	),
	'ppa' => array(
		(int) 0 => 'PP00088G00350',
		(int) 1 => 'PP00194G00960',
		(int) 2 => 'PP00169G00390',
		(int) 3 => 'PP00088G00320',
		(int) 4 => 'PP00286G00200',
		(int) 5 => 'PP00162G00320',
		(int) 6 => 'PP04335G00010'
	),
	'cvu' => array(
		(int) 0 => 'CV00G86690',
		(int) 1 => 'CV00G87360',
		(int) 2 => 'CV00G51230'
	),
	'vca' => array(
		(int) 0 => 'VC00G129980',
		(int) 1 => 'VC00G12880',
		(int) 2 => 'VC00G32420'
	),
	'ome' => array(
		(int) 0 => 'OM_10G03330',
		(int) 1 => 'OM_03G05220',
		(int) 2 => 'OM_01G05500'
	),
	'cre' => array(
		(int) 0 => 'CR00G02160',
		(int) 1 => 'CR02G09240',
		(int) 2 => 'CR10G08860'
	),
	'ota' => array(
		(int) 0 => 'OT_09G03630',
		(int) 1 => 'OT_05G05110',
		(int) 2 => 'OT_01G01430'
	),
	'mrcc299' => array(
		(int) 0 => 'MRCC299_14G01700',
		(int) 1 => 'MRCC299_10G00940',
		(int) 2 => 'MRCC299_01G04440'
	),
	'pse3' => array(
		(int) 0 => 'PI00G37250',
		(int) 1 => 'PI00G41930',
		(int) 2 => 'PI00G67540'
	),
	'prcc4223' => array(
		(int) 0 => 'RCC4223.01g10830',
		(int) 1 => 'RCC4223.101g00020',
		(int) 2 => 'RCC4223.14g02260',
		(int) 3 => 'RCC4223.16g01430'
	),
	'acg' => array(
		(int) 0 => 'AC00G36650',
		(int) 1 => 'AC00G92770',
		(int) 2 => 'AC00G81870'
	),
	'bprrcc1105' => array(
		(int) 0 => 'BPRRCC1105_10G00930',
		(int) 1 => 'BPRRCC1105_15G00250',
		(int) 2 => 'BPRRCC1105_01G01500'
	),
	'orcc809' => array(
		(int) 0 => 'ORCC809_09G02760',
		(int) 1 => 'ORCC809_05G04850',
		(int) 2 => 'ORCC809_01G04970'
	),
	'olu' => array(
		(int) 0 => 'OL09G03300',
		(int) 1 => 'OL05G04900',
		(int) 2 => 'OL01G01670'
	),
	'mpu' => array(
		(int) 0 => 'MP03G02270',
		(int) 1 => 'MP13G03550',
		(int) 2 => 'MP05G06920'
	),
	'gsu' => array(
		(int) 0 => 'gsu43680',
		(int) 1 => 'gsu111270'
	),
	'ccr' => array(
		(int) 0 => 'ccr145620',
		(int) 1 => 'ccr178580'
	),
	'cme' => array(
		(int) 0 => 'CM14G01290',
		(int) 1 => 'CM10G00160'
	),
	'apr' => array(
		(int) 0 => 'AP00G64590',
		(int) 1 => 'AP00G26920',
		(int) 2 => 'AP00G51660'
	),
	'tps' => array(
		(int) 0 => 'TP07G05850',
		(int) 1 => 'TP08G02140',
		(int) 2 => 'TP05G01890'
	),
	'nga' => array(
		(int) 0 => 'Naga_100001g91',
		(int) 1 => 'Naga_100004g167',
		(int) 2 => 'Naga_100253g6'
	),
	'aan' => array(
		(int) 0 => 'AA0025G00710',
		(int) 1 => 'AA0008G00380',
		(int) 2 => 'AA0005G02200'
	),
	'esi' => array(
		(int) 0 => 'ES0102G00310',
		(int) 1 => 'ES0330G00020',
		(int) 2 => 'ES0018G00110',
		(int) 3 => 'ES0192G00290'
	),
	'fcy' => array(
		(int) 0 => 'FC001G02950',
		(int) 1 => 'FC013G03010',
		(int) 2 => 'FC005G03510',
		(int) 3 => 'FC012G00090',
		(int) 4 => 'FC001G01920',
		(int) 5 => 'FC019G00800'
	),
	'hsp' => array(
		(int) 0 => 'HE0000G49400',
		(int) 1 => 'HE0000G26650',
		(int) 2 => 'HE0000G57170',
		(int) 3 => 'HE0000G42020'
	),
	'ptri' => array(
		(int) 0 => 'PTI_15G03410',
		(int) 1 => 'PTI_15G02630',
		(int) 2 => 'PTI_18G02800',
		(int) 3 => 'PTI_06G02290'
	),
	'phs' => array(
		(int) 0 => 'phs366730',
		(int) 1 => 'phs196490',
		(int) 2 => 'phs33280',
		(int) 3 => 'phs305450'
	),
	'cnc64a' => array(
		(int) 0 => 'CNC64A_007G03330',
		(int) 1 => 'CNC64A_012G00390',
		(int) 2 => 'CNC64A_007G02290'
	),
	'scp' => array(
		(int) 0 => 'SPBC776.03',
		(int) 1 => 'SPBC19F5.04'
	),
	'emh' => array(
		(int) 0 => 'emh307330',
		(int) 1 => 'emh720040',
		(int) 2 => 'emh176620',
		(int) 3 => 'emh331300',
		(int) 4 => 'emh60350'
	),
	'sac' => array(
		(int) 0 => 'YJR139C',
		(int) 1 => 'YER052C'
	)
)
$gene_id = 'AT1G31230'
$all_species_index = array(
	(int) 0 => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333'
	),
	(int) 1 => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702'
	),
	(int) 2 => array(
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'tax_id' => '763042'
	),
	(int) 3 => array(
		'species' => 'aan',
		'common_name' => 'Aureococcus anophagefferens',
		'tax_id' => '44056'
	),
	(int) 4 => array(
		'species' => 'apr',
		'common_name' => 'Auxenochlorella protothecoides',
		'tax_id' => '3075'
	),
	(int) 5 => array(
		'species' => 'bprrcc1105',
		'common_name' => 'Bathycoccus prasinos',
		'tax_id' => '41875'
	),
	(int) 6 => array(
		'species' => 'cel',
		'common_name' => 'Caenorhabditis elegans',
		'tax_id' => '6239'
	),
	(int) 7 => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055'
	),
	(int) 8 => array(
		'species' => 'cnc64a',
		'common_name' => 'Chlorella sp NC64A',
		'tax_id' => '310507'
	),
	(int) 9 => array(
		'species' => 'ccr',
		'common_name' => 'Chondrus crispus',
		'tax_id' => '2769'
	),
	(int) 10 => array(
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'tax_id' => '574566'
	),
	(int) 11 => array(
		'species' => 'cme',
		'common_name' => 'Cyanidioschyzon merolae',
		'tax_id' => '45157'
	),
	(int) 12 => array(
		'species' => 'ddi',
		'common_name' => 'Dictyostelium discoideum',
		'tax_id' => '44689'
	),
	(int) 13 => array(
		'species' => 'drm',
		'common_name' => 'Drosophila melanogaster',
		'tax_id' => '7227'
	),
	(int) 14 => array(
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'tax_id' => '2880'
	),
	(int) 15 => array(
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'tax_id' => '280463'
	),
	(int) 16 => array(
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'tax_id' => '186039'
	),
	(int) 17 => array(
		'species' => 'gsu',
		'common_name' => 'Galdieria sulphuraria',
		'tax_id' => '130081'
	),
	(int) 18 => array(
		'species' => 'hsp',
		'common_name' => 'Helicosporidium sp. ',
		'tax_id' => '145475'
	),
	(int) 19 => array(
		'species' => 'hom',
		'common_name' => 'Homo sapiens',
		'tax_id' => '9606'
	),
	(int) 20 => array(
		'species' => 'mpu',
		'common_name' => 'Micromonas pusilla strain CCMP1545',
		'tax_id' => '564608'
	),
	(int) 21 => array(
		'species' => 'mrcc299',
		'common_name' => 'Micromonas sp RCC299',
		'tax_id' => '296587'
	),
	(int) 22 => array(
		'species' => 'mus',
		'common_name' => 'Mus musculus',
		'tax_id' => '10090'
	),
	(int) 23 => array(
		'species' => 'nga',
		'common_name' => 'Nannochloropsis gaditana',
		'tax_id' => '72520'
	),
	(int) 24 => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'tax_id' => '4530'
	),
	(int) 25 => array(
		'species' => 'olu',
		'common_name' => 'Ostreococcus lucimarinus',
		'tax_id' => '242159'
	),
	(int) 26 => array(
		'species' => 'ome',
		'common_name' => 'Ostreococcus mediterraneus',
		'tax_id' => '1486918'
	),
	(int) 27 => array(
		'species' => 'orcc809',
		'common_name' => 'Ostreococcus sp RCC809',
		'tax_id' => '385169'
	),
	(int) 28 => array(
		'species' => 'ota',
		'common_name' => 'Ostreococcus tauri',
		'tax_id' => '70448'
	),
	(int) 29 => array(
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'tax_id' => '5888'
	),
	(int) 30 => array(
		'species' => 'ptri',
		'common_name' => 'Phaeodactylum tricornutum',
		'tax_id' => '2850'
	),
	(int) 31 => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'tax_id' => '3218'
	),
	(int) 32 => array(
		'species' => 'phs',
		'common_name' => 'Phytophtora sojae',
		'tax_id' => '67593'
	),
	(int) 33 => array(
		'species' => 'pse3',
		'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
		'tax_id' => '1470871'
	),
	(int) 34 => array(
		'species' => 'prcc4223',
		'common_name' => 'Picochlorum_RCC4223',
		'tax_id' => '249344'
	),
	(int) 35 => array(
		'species' => 'sac',
		'common_name' => 'Saccharomyces cerevisiae strain S288C',
		'tax_id' => '4932'
	),
	(int) 36 => array(
		'species' => 'scp',
		'common_name' => 'Schizosaccharomyces pombe',
		'tax_id' => '4896'
	),
	(int) 37 => array(
		'species' => 'tps',
		'common_name' => 'Thalassiosira pseudonana',
		'tax_id' => '35128'
	),
	(int) 38 => array(
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'tax_id' => '3067'
	)
)
$all_species = array(
	'atr' => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333'
	),
	'ath' => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702'
	),
	'acg' => array(
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'tax_id' => '763042'
	),
	'aan' => array(
		'species' => 'aan',
		'common_name' => 'Aureococcus anophagefferens',
		'tax_id' => '44056'
	),
	'apr' => array(
		'species' => 'apr',
		'common_name' => 'Auxenochlorella protothecoides',
		'tax_id' => '3075'
	),
	'bprrcc1105' => array(
		'species' => 'bprrcc1105',
		'common_name' => 'Bathycoccus prasinos',
		'tax_id' => '41875'
	),
	'cel' => array(
		'species' => 'cel',
		'common_name' => 'Caenorhabditis elegans',
		'tax_id' => '6239'
	),
	'cre' => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055'
	),
	'cnc64a' => array(
		'species' => 'cnc64a',
		'common_name' => 'Chlorella sp NC64A',
		'tax_id' => '310507'
	),
	'ccr' => array(
		'species' => 'ccr',
		'common_name' => 'Chondrus crispus',
		'tax_id' => '2769'
	),
	'cvu' => array(
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'tax_id' => '574566'
	),
	'cme' => array(
		'species' => 'cme',
		'common_name' => 'Cyanidioschyzon merolae',
		'tax_id' => '45157'
	),
	'ddi' => array(
		'species' => 'ddi',
		'common_name' => 'Dictyostelium discoideum',
		'tax_id' => '44689'
	),
	'drm' => array(
		'species' => 'drm',
		'common_name' => 'Drosophila melanogaster',
		'tax_id' => '7227'
	),
	'esi' => array(
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'tax_id' => '2880'
	),
	'emh' => array(
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'tax_id' => '280463'
	),
	'fcy' => array(
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'tax_id' => '186039'
	),
	'gsu' => array(
		'species' => 'gsu',
		'common_name' => 'Galdieria sulphuraria',
		'tax_id' => '130081'
	),
	'hsp' => array(
		'species' => 'hsp',
		'common_name' => 'Helicosporidium sp. ',
		'tax_id' => '145475'
	),
	'hom' => array(
		'species' => 'hom',
		'common_name' => 'Homo sapiens',
		'tax_id' => '9606'
	),
	'mpu' => array(
		'species' => 'mpu',
		'common_name' => 'Micromonas pusilla strain CCMP1545',
		'tax_id' => '564608'
	),
	'mrcc299' => array(
		'species' => 'mrcc299',
		'common_name' => 'Micromonas sp RCC299',
		'tax_id' => '296587'
	),
	'mus' => array(
		'species' => 'mus',
		'common_name' => 'Mus musculus',
		'tax_id' => '10090'
	),
	'nga' => array(
		'species' => 'nga',
		'common_name' => 'Nannochloropsis gaditana',
		'tax_id' => '72520'
	),
	'osa' => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'tax_id' => '4530'
	),
	'olu' => array(
		'species' => 'olu',
		'common_name' => 'Ostreococcus lucimarinus',
		'tax_id' => '242159'
	),
	'ome' => array(
		'species' => 'ome',
		'common_name' => 'Ostreococcus mediterraneus',
		'tax_id' => '1486918'
	),
	'orcc809' => array(
		'species' => 'orcc809',
		'common_name' => 'Ostreococcus sp RCC809',
		'tax_id' => '385169'
	),
	'ota' => array(
		'species' => 'ota',
		'common_name' => 'Ostreococcus tauri',
		'tax_id' => '70448'
	),
	'pte' => array(
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'tax_id' => '5888'
	),
	'ptri' => array(
		'species' => 'ptri',
		'common_name' => 'Phaeodactylum tricornutum',
		'tax_id' => '2850'
	),
	'ppa' => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'tax_id' => '3218'
	),
	'phs' => array(
		'species' => 'phs',
		'common_name' => 'Phytophtora sojae',
		'tax_id' => '67593'
	),
	'pse3' => array(
		'species' => 'pse3',
		'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
		'tax_id' => '1470871'
	),
	'prcc4223' => array(
		'species' => 'prcc4223',
		'common_name' => 'Picochlorum_RCC4223',
		'tax_id' => '249344'
	),
	'sac' => array(
		'species' => 'sac',
		'common_name' => 'Saccharomyces cerevisiae strain S288C',
		'tax_id' => '4932'
	),
	'scp' => array(
		'species' => 'scp',
		'common_name' => 'Schizosaccharomyces pombe',
		'tax_id' => '4896'
	),
	'tps' => array(
		'species' => 'tps',
		'common_name' => 'Thalassiosira pseudonana',
		'tax_id' => '35128'
	),
	'vca' => array(
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'tax_id' => '3067'
	)
)
$gene_family_types_information = array(
	'HOMFAM' => array(
		'id' => 'HOMFAM',
		'name' => 'Homologous gene family',
		'prefix' => 'HOM',
		'gene_type' => 'coding',
		'method' => '{}',
		'ancestry' => 'homology',
		'parent_id' => ''
	),
	'ORTHOFAM' => array(
		'id' => 'ORTHOFAM',
		'name' => 'Orthologous gene family',
		'prefix' => 'ORTH',
		'gene_type' => 'coding',
		'method' => '{}',
		'ancestry' => 'orthology',
		'parent_id' => 'HOMFAM'
	)
)
$gene_family_types_configuration = array()
$data_identifier = 'AT1G31230'
$data_type = 'gene_id'
$allow_async_use = true
$gene_placeholder = 'PP00006G00240'
$gf_placeholder = 'HOM03P013870'
$title_for_layout = 'Pico-PLAZA 3.0 : Interactive Phylogenetics Module'
$collapse1 = ''
$collapse2 = 'collapse in'
$similarity_hit = array(
	'gene_id' => 'CNC64A_383G00010',
	'e_value' => '1e-25',
	'bit_score' => '106',
	'alignment_length' => '58',
	'identity_percentage' => '84.48',
	'gf' => array(
		'HOMFAM' => 'HOM03P000834',
		'ORTHOFAM' => 'ORTHO03P095951'
	)
)
$checked = null
$similarity_hit_gene = 'CNC64A_383G00010'
include - APP/View/Analysis/custom_tree_creation.ctp, line 169
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::render() - CORE/Cake/View/View.php, line 473
Controller::render() - CORE/Cake/Controller/Controller.php, line 963
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167
[main] - APP/webroot/index.php, line 146

Notice (8): Undefined index: common_name [APP/View/Analysis/custom_tree_creation.ctp, line 169]
Code Context
                                                    echo "<td><input type='checkbox' name='selected_genes[]' value='".$similarity_hit['gene_id']."' ".$checked." /></td>\n";
                                                    echo "<td>".$this->Html->link($similarity_hit_gene,array("controller"=>"genes","action"=>"view",$similarity_hit_gene),array("target"=>"_blank"))."</td>\n";
                                                    echo "<td>".$this->Html->link($similarity_hit['common_name'],array("controller"=>"organism","action"=>"view",urlencode($similarity_hit['common_name'])))."</td>\n";
$viewFile = '/xtras/group/biocomp/plaza/versions/plaza_pico_03/app/View/Analysis/custom_tree_creation.ctp'
$dataForView = array(
	'allowed_extra_sequences_types' => array(
		'aa' => 'Protein',
		'dna' => 'DNA'
	),
	'allowed_editing_methods' => array(
		'column' => 'Positions only',
		'row' => 'Genes only',
		'column_row' => 'Positions and Genes',
		'none' => 'No editing'
	),
	'allowed_tree_programs' => array(
		'fasttree' => 'FastTree',
		'iqtree' => 'IQ-TREE (includes model testing)',
		'raxml' => 'RAxML',
		'phyml' => 'PhyML'
	),
	'allowed_msa_programs' => array(
		'muscle' => 'MUSCLE',
		'mafft' => 'MAFFT'
	),
	'allowed_number_blasthits' => array(
		(int) 0 => 'all',
		(int) 1 => (int) 20,
		(int) 2 => (int) 10,
		(int) 3 => (int) 5,
		(int) 4 => (int) 1
	),
	'similarity_hits_genes' => array(
		'AT1G31230' => array(
			'gene_id' => 'AT1G31230',
			'e_value' => '0.0',
			'bit_score' => '1873',
			'alignment_length' => '912',
			'identity_percentage' => '100.00',
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AT4G19710' => array(
			'gene_id' => 'AT4G19710',
			'e_value' => '0.0',
			'bit_score' => '1449',
			'alignment_length' => '850',
			'identity_percentage' => '81.06',
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ATR_00002G04450' => array(
			'gene_id' => 'ATR_00002G04450',
			'e_value' => '0.0',
			'bit_score' => '1425',
			'alignment_length' => '872',
			'identity_percentage' => '77.98',
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OS08G25390' => array(
			'gene_id' => 'OS08G25390',
			'e_value' => '0.0',
			'bit_score' => '1352',
			'alignment_length' => '856',
			'identity_percentage' => '74.30',
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OS09G12290' => array(
			'gene_id' => 'OS09G12290',
			'e_value' => '0.0',
			'bit_score' => '1323',
			'alignment_length' => '891',
			'identity_percentage' => '71.83',
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PP00088G00350' => array(
			'gene_id' => 'PP00088G00350',
			'e_value' => '0.0',
			'bit_score' => '1213',
			'alignment_length' => '882',
			'identity_percentage' => '66.44',
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PP00194G00960' => array(
			'gene_id' => 'PP00194G00960',
			'e_value' => '0.0',
			'bit_score' => '1182',
			'alignment_length' => '887',
			'identity_percentage' => '65.39',
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CV00G86690' => array(
			'gene_id' => 'CV00G86690',
			'e_value' => '0.0',
			'bit_score' => '1026',
			'alignment_length' => '837',
			'identity_percentage' => '62.01',
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'VC00G129980' => array(
			'gene_id' => 'VC00G129980',
			'e_value' => '0.0',
			'bit_score' => '1005',
			'alignment_length' => '845',
			'identity_percentage' => '58.34',
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OM_10G03330' => array(
			'gene_id' => 'OM_10G03330',
			'e_value' => '0.0',
			'bit_score' => '1004',
			'alignment_length' => '857',
			'identity_percentage' => '57.29',
			'species' => 'ome',
			'common_name' => 'Ostreococcus mediterraneus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CR00G02160' => array(
			'gene_id' => 'CR00G02160',
			'e_value' => '0.0',
			'bit_score' => '1003',
			'alignment_length' => '846',
			'identity_percentage' => '58.27',
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OT_09G03630' => array(
			'gene_id' => 'OT_09G03630',
			'e_value' => '0.0',
			'bit_score' => '986',
			'alignment_length' => '862',
			'identity_percentage' => '55.57',
			'species' => 'ota',
			'common_name' => 'Ostreococcus tauri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'MRCC299_14G01700' => array(
			'gene_id' => 'MRCC299_14G01700',
			'e_value' => '0.0',
			'bit_score' => '965',
			'alignment_length' => '862',
			'identity_percentage' => '55.92',
			'species' => 'mrcc299',
			'common_name' => 'Micromonas sp RCC299',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PI00G37250' => array(
			'gene_id' => 'PI00G37250',
			'e_value' => '0.0',
			'bit_score' => '959',
			'alignment_length' => '847',
			'identity_percentage' => '56.67',
			'species' => 'pse3',
			'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'RCC4223.01g10830' => array(
			'gene_id' => 'RCC4223.01g10830',
			'e_value' => '0.0',
			'bit_score' => '959',
			'alignment_length' => '847',
			'identity_percentage' => '56.91',
			'species' => 'prcc4223',
			'common_name' => 'Picochlorum_RCC4223',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AC00G36650' => array(
			'gene_id' => 'AC00G36650',
			'e_value' => '0.0',
			'bit_score' => '954',
			'alignment_length' => '874',
			'identity_percentage' => '54.81',
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'BPRRCC1105_10G00930' => array(
			'gene_id' => 'BPRRCC1105_10G00930',
			'e_value' => '0.0',
			'bit_score' => '945',
			'alignment_length' => '870',
			'identity_percentage' => '54.71',
			'species' => 'bprrcc1105',
			'common_name' => 'Bathycoccus prasinos',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ORCC809_09G02760' => array(
			'gene_id' => 'ORCC809_09G02760',
			'e_value' => '0.0',
			'bit_score' => '924',
			'alignment_length' => '814',
			'identity_percentage' => '55.65',
			'species' => 'orcc809',
			'common_name' => 'Ostreococcus sp RCC809',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OL09G03300' => array(
			'gene_id' => 'OL09G03300',
			'e_value' => '0.0',
			'bit_score' => '923',
			'alignment_length' => '811',
			'identity_percentage' => '55.24',
			'species' => 'olu',
			'common_name' => 'Ostreococcus lucimarinus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'MP03G02270' => array(
			'gene_id' => 'MP03G02270',
			'e_value' => '0.0',
			'bit_score' => '918',
			'alignment_length' => '864',
			'identity_percentage' => '53.59',
			'species' => 'mpu',
			'common_name' => 'Micromonas pusilla strain CCMP1545',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'gsu43680' => array(
			'gene_id' => 'gsu43680',
			'e_value' => '0.0',
			'bit_score' => '779',
			'alignment_length' => '926',
			'identity_percentage' => '43.95',
			'species' => 'gsu',
			'common_name' => 'Galdieria sulphuraria',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ccr145620' => array(
			'gene_id' => 'ccr145620',
			'e_value' => '0.0',
			'bit_score' => '753',
			'alignment_length' => '805',
			'identity_percentage' => '49.44',
			'species' => 'ccr',
			'common_name' => 'Chondrus crispus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CM14G01290' => array(
			'gene_id' => 'CM14G01290',
			'e_value' => '0.0',
			'bit_score' => '753',
			'alignment_length' => '909',
			'identity_percentage' => '44.44',
			'species' => 'cme',
			'common_name' => 'Cyanidioschyzon merolae',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AP00G64590' => array(
			'gene_id' => 'AP00G64590',
			'e_value' => '0.0',
			'bit_score' => '742',
			'alignment_length' => '803',
			'identity_percentage' => '48.82',
			'species' => 'apr',
			'common_name' => 'Auxenochlorella protothecoides',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'RCC4223.101g00020' => array(
			'gene_id' => 'RCC4223.101g00020',
			'e_value' => '0.0',
			'bit_score' => '569',
			'alignment_length' => '827',
			'identity_percentage' => '37.00',
			'species' => 'prcc4223',
			'common_name' => 'Picochlorum_RCC4223',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'TP07G05850' => array(
			'gene_id' => 'TP07G05850',
			'e_value' => '2e-178',
			'bit_score' => '548',
			'alignment_length' => '847',
			'identity_percentage' => '36.36',
			'species' => 'tps',
			'common_name' => 'Thalassiosira pseudonana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'Naga_100001g91' => array(
			'gene_id' => 'Naga_100001g91',
			'e_value' => '1e-175',
			'bit_score' => '540',
			'alignment_length' => '889',
			'identity_percentage' => '36.33',
			'species' => 'nga',
			'common_name' => 'Nannochloropsis gaditana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PP00169G00390' => array(
			'gene_id' => 'PP00169G00390',
			'e_value' => '5e-169',
			'bit_score' => '514',
			'alignment_length' => '462',
			'identity_percentage' => '55.63',
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AA0025G00710' => array(
			'gene_id' => 'AA0025G00710',
			'e_value' => '5e-169',
			'bit_score' => '521',
			'alignment_length' => '883',
			'identity_percentage' => '35.79',
			'species' => 'aan',
			'common_name' => 'Aureococcus anophagefferens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PP00088G00320' => array(
			'gene_id' => 'PP00088G00320',
			'e_value' => '6e-167',
			'bit_score' => '498',
			'alignment_length' => '365',
			'identity_percentage' => '63.29',
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ES0102G00310' => array(
			'gene_id' => 'ES0102G00310',
			'e_value' => '4e-166',
			'bit_score' => '516',
			'alignment_length' => '911',
			'identity_percentage' => '35.68',
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'FC001G02950' => array(
			'gene_id' => 'FC001G02950',
			'e_value' => '1e-165',
			'bit_score' => '514',
			'alignment_length' => '884',
			'identity_percentage' => '34.73',
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'HE0000G49400' => array(
			'gene_id' => 'HE0000G49400',
			'e_value' => '6e-160',
			'bit_score' => '482',
			'alignment_length' => '422',
			'identity_percentage' => '56.40',
			'species' => 'hsp',
			'common_name' => 'Helicosporidium sp. ',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PTI_15G03410' => array(
			'gene_id' => 'PTI_15G03410',
			'e_value' => '5e-151',
			'bit_score' => '478',
			'alignment_length' => '943',
			'identity_percentage' => '34.25',
			'species' => 'ptri',
			'common_name' => 'Phaeodactylum tricornutum',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'FC013G03010' => array(
			'gene_id' => 'FC013G03010',
			'e_value' => '6e-150',
			'bit_score' => '472',
			'alignment_length' => '871',
			'identity_percentage' => '36.39',
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'phs366730' => array(
			'gene_id' => 'phs366730',
			'e_value' => '2e-148',
			'bit_score' => '474',
			'alignment_length' => '878',
			'identity_percentage' => '34.85',
			'species' => 'phs',
			'common_name' => 'Phytophtora sojae',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CV00G87360' => array(
			'gene_id' => 'CV00G87360',
			'e_value' => '1e-127',
			'bit_score' => '396',
			'alignment_length' => '360',
			'identity_percentage' => '52.50',
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CR02G09240' => array(
			'gene_id' => 'CR02G09240',
			'e_value' => '3e-116',
			'bit_score' => '367',
			'alignment_length' => '362',
			'identity_percentage' => '52.49',
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CNC64A_007G03330' => array(
			'gene_id' => 'CNC64A_007G03330',
			'e_value' => '7e-116',
			'bit_score' => '366',
			'alignment_length' => '383',
			'identity_percentage' => '47.52',
			'species' => 'cnc64a',
			'common_name' => 'Chlorella sp NC64A',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AC00G92770' => array(
			'gene_id' => 'AC00G92770',
			'e_value' => '8e-116',
			'bit_score' => '364',
			'alignment_length' => '324',
			'identity_percentage' => '55.86',
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'VC00G12880' => array(
			'gene_id' => 'VC00G12880',
			'e_value' => '2e-109',
			'bit_score' => '349',
			'alignment_length' => '369',
			'identity_percentage' => '48.51',
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'HE0000G26650' => array(
			'gene_id' => 'HE0000G26650',
			'e_value' => '4e-109',
			'bit_score' => '348',
			'alignment_length' => '363',
			'identity_percentage' => '49.59',
			'species' => 'hsp',
			'common_name' => 'Helicosporidium sp. ',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AP00G26920' => array(
			'gene_id' => 'AP00G26920',
			'e_value' => '5e-109',
			'bit_score' => '347',
			'alignment_length' => '371',
			'identity_percentage' => '49.06',
			'species' => 'apr',
			'common_name' => 'Auxenochlorella protothecoides',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PI00G41930' => array(
			'gene_id' => 'PI00G41930',
			'e_value' => '2e-107',
			'bit_score' => '343',
			'alignment_length' => '357',
			'identity_percentage' => '47.06',
			'species' => 'pse3',
			'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'RCC4223.14g02260' => array(
			'gene_id' => 'RCC4223.14g02260',
			'e_value' => '3e-103',
			'bit_score' => '332',
			'alignment_length' => '360',
			'identity_percentage' => '45.56',
			'species' => 'prcc4223',
			'common_name' => 'Picochlorum_RCC4223',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'MRCC299_10G00940' => array(
			'gene_id' => 'MRCC299_10G00940',
			'e_value' => '1e-92',
			'bit_score' => '305',
			'alignment_length' => '382',
			'identity_percentage' => '45.29',
			'species' => 'mrcc299',
			'common_name' => 'Micromonas sp RCC299',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'MP13G03550' => array(
			'gene_id' => 'MP13G03550',
			'e_value' => '6e-87',
			'bit_score' => '291',
			'alignment_length' => '393',
			'identity_percentage' => '43.77',
			'species' => 'mpu',
			'common_name' => 'Micromonas pusilla strain CCMP1545',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'SPBC776.03' => array(
			'gene_id' => 'SPBC776.03',
			'e_value' => '3e-85',
			'bit_score' => '284',
			'alignment_length' => '340',
			'identity_percentage' => '44.71',
			'species' => 'scp',
			'common_name' => 'Schizosaccharomyces pombe',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OM_03G05220' => array(
			'gene_id' => 'OM_03G05220',
			'e_value' => '6e-85',
			'bit_score' => '283',
			'alignment_length' => '362',
			'identity_percentage' => '41.99',
			'species' => 'ome',
			'common_name' => 'Ostreococcus mediterraneus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OT_05G05110' => array(
			'gene_id' => 'OT_05G05110',
			'e_value' => '1e-83',
			'bit_score' => '279',
			'alignment_length' => '270',
			'identity_percentage' => '50.37',
			'species' => 'ota',
			'common_name' => 'Ostreococcus tauri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ORCC809_05G04850' => array(
			'gene_id' => 'ORCC809_05G04850',
			'e_value' => '3e-81',
			'bit_score' => '273',
			'alignment_length' => '271',
			'identity_percentage' => '50.55',
			'species' => 'orcc809',
			'common_name' => 'Ostreococcus sp RCC809',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'phs196490' => array(
			'gene_id' => 'phs196490',
			'e_value' => '3e-79',
			'bit_score' => '281',
			'alignment_length' => '880',
			'identity_percentage' => '25.80',
			'species' => 'phs',
			'common_name' => 'Phytophtora sojae',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'emh307330' => array(
			'gene_id' => 'emh307330',
			'e_value' => '2e-75',
			'bit_score' => '270',
			'alignment_length' => '488',
			'identity_percentage' => '34.43',
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OL05G04900' => array(
			'gene_id' => 'OL05G04900',
			'e_value' => '1e-71',
			'bit_score' => '244',
			'alignment_length' => '275',
			'identity_percentage' => '51.64',
			'species' => 'olu',
			'common_name' => 'Ostreococcus lucimarinus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'YJR139C' => array(
			'gene_id' => 'YJR139C',
			'e_value' => '4e-71',
			'bit_score' => '245',
			'alignment_length' => '367',
			'identity_percentage' => '40.60',
			'species' => 'sac',
			'common_name' => 'Saccharomyces cerevisiae strain S288C',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'BPRRCC1105_15G00250' => array(
			'gene_id' => 'BPRRCC1105_15G00250',
			'e_value' => '2e-64',
			'bit_score' => '229',
			'alignment_length' => '276',
			'identity_percentage' => '48.19',
			'species' => 'bprrcc1105',
			'common_name' => 'Bathycoccus prasinos',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'FC005G03510' => array(
			'gene_id' => 'FC005G03510',
			'e_value' => '3e-60',
			'bit_score' => '212',
			'alignment_length' => '286',
			'identity_percentage' => '40.56',
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OS12G03190' => array(
			'gene_id' => 'OS12G03190',
			'e_value' => '2e-49',
			'bit_score' => '184',
			'alignment_length' => '378',
			'identity_percentage' => '32.28',
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ATR_00119G01000' => array(
			'gene_id' => 'ATR_00119G01000',
			'e_value' => '3e-49',
			'bit_score' => '183',
			'alignment_length' => '271',
			'identity_percentage' => '40.22',
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'Naga_100004g167' => array(
			'gene_id' => 'Naga_100004g167',
			'e_value' => '6e-49',
			'bit_score' => '187',
			'alignment_length' => '471',
			'identity_percentage' => '29.30',
			'species' => 'nga',
			'common_name' => 'Nannochloropsis gaditana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PP00286G00200' => array(
			'gene_id' => 'PP00286G00200',
			'e_value' => '2e-48',
			'bit_score' => '186',
			'alignment_length' => '479',
			'identity_percentage' => '27.14',
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AT5G21060' => array(
			'gene_id' => 'AT5G21060',
			'e_value' => '4e-47',
			'bit_score' => '177',
			'alignment_length' => '266',
			'identity_percentage' => '36.84',
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AT3G02020' => array(
			'gene_id' => 'AT3G02020',
			'e_value' => '6e-46',
			'bit_score' => '178',
			'alignment_length' => '550',
			'identity_percentage' => '27.27',
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AA0008G00380' => array(
			'gene_id' => 'AA0008G00380',
			'e_value' => '1e-45',
			'bit_score' => '173',
			'alignment_length' => '356',
			'identity_percentage' => '37.08',
			'species' => 'aan',
			'common_name' => 'Aureococcus anophagefferens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OS07G20544' => array(
			'gene_id' => 'OS07G20544',
			'e_value' => '3e-45',
			'bit_score' => '176',
			'alignment_length' => '479',
			'identity_percentage' => '29.02',
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ccr178580' => array(
			'gene_id' => 'ccr178580',
			'e_value' => '3e-45',
			'bit_score' => '177',
			'alignment_length' => '485',
			'identity_percentage' => '28.04',
			'species' => 'ccr',
			'common_name' => 'Chondrus crispus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OS11G03470' => array(
			'gene_id' => 'OS11G03470',
			'e_value' => '1e-44',
			'bit_score' => '171',
			'alignment_length' => '389',
			'identity_percentage' => '31.88',
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PP00162G00320' => array(
			'gene_id' => 'PP00162G00320',
			'e_value' => '1e-44',
			'bit_score' => '175',
			'alignment_length' => '479',
			'identity_percentage' => '25.89',
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CM10G00160' => array(
			'gene_id' => 'CM10G00160',
			'e_value' => '1e-44',
			'bit_score' => '175',
			'alignment_length' => '472',
			'identity_percentage' => '29.45',
			'species' => 'cme',
			'common_name' => 'Cyanidioschyzon merolae',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CV00G51230' => array(
			'gene_id' => 'CV00G51230',
			'e_value' => '3e-44',
			'bit_score' => '171',
			'alignment_length' => '476',
			'identity_percentage' => '27.94',
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OS01G70300' => array(
			'gene_id' => 'OS01G70300',
			'e_value' => '3e-44',
			'bit_score' => '173',
			'alignment_length' => '471',
			'identity_percentage' => '26.75',
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AT5G14060' => array(
			'gene_id' => 'AT5G14060',
			'e_value' => '5e-44',
			'bit_score' => '172',
			'alignment_length' => '475',
			'identity_percentage' => '26.32',
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'MRCC299_01G04440' => array(
			'gene_id' => 'MRCC299_01G04440',
			'e_value' => '6e-44',
			'bit_score' => '171',
			'alignment_length' => '482',
			'identity_percentage' => '28.42',
			'species' => 'mrcc299',
			'common_name' => 'Micromonas sp RCC299',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OS03G63330' => array(
			'gene_id' => 'OS03G63330',
			'e_value' => '9e-44',
			'bit_score' => '172',
			'alignment_length' => '479',
			'identity_percentage' => '27.97',
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PTI_15G02630' => array(
			'gene_id' => 'PTI_15G02630',
			'e_value' => '1e-43',
			'bit_score' => '171',
			'alignment_length' => '474',
			'identity_percentage' => '29.75',
			'species' => 'ptri',
			'common_name' => 'Phaeodactylum tricornutum',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'gsu111270' => array(
			'gene_id' => 'gsu111270',
			'e_value' => '2e-43',
			'bit_score' => '170',
			'alignment_length' => '484',
			'identity_percentage' => '29.75',
			'species' => 'gsu',
			'common_name' => 'Galdieria sulphuraria',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OL01G01670' => array(
			'gene_id' => 'OL01G01670',
			'e_value' => '4e-43',
			'bit_score' => '168',
			'alignment_length' => '477',
			'identity_percentage' => '27.25',
			'species' => 'olu',
			'common_name' => 'Ostreococcus lucimarinus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'YER052C' => array(
			'gene_id' => 'YER052C',
			'e_value' => '5e-42',
			'bit_score' => '166',
			'alignment_length' => '504',
			'identity_percentage' => '27.78',
			'species' => 'sac',
			'common_name' => 'Saccharomyces cerevisiae strain S288C',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'MP05G06920' => array(
			'gene_id' => 'MP05G06920',
			'e_value' => '1e-41',
			'bit_score' => '166',
			'alignment_length' => '479',
			'identity_percentage' => '27.97',
			'species' => 'mpu',
			'common_name' => 'Micromonas pusilla strain CCMP1545',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'SPBC19F5.04' => array(
			'gene_id' => 'SPBC19F5.04',
			'e_value' => '1e-41',
			'bit_score' => '165',
			'alignment_length' => '497',
			'identity_percentage' => '26.56',
			'species' => 'scp',
			'common_name' => 'Schizosaccharomyces pombe',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'RCC4223.16g01430' => array(
			'gene_id' => 'RCC4223.16g01430',
			'e_value' => '2e-41',
			'bit_score' => '165',
			'alignment_length' => '525',
			'identity_percentage' => '28.38',
			'species' => 'prcc4223',
			'common_name' => 'Picochlorum_RCC4223',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AT5G13280' => array(
			'gene_id' => 'AT5G13280',
			'e_value' => '2e-41',
			'bit_score' => '165',
			'alignment_length' => '486',
			'identity_percentage' => '27.16',
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'BPRRCC1105_01G01500' => array(
			'gene_id' => 'BPRRCC1105_01G01500',
			'e_value' => '3e-41',
			'bit_score' => '164',
			'alignment_length' => '505',
			'identity_percentage' => '26.14',
			'species' => 'bprrcc1105',
			'common_name' => 'Bathycoccus prasinos',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PI00G67540' => array(
			'gene_id' => 'PI00G67540',
			'e_value' => '3e-41',
			'bit_score' => '164',
			'alignment_length' => '483',
			'identity_percentage' => '28.57',
			'species' => 'pse3',
			'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ORCC809_01G04970' => array(
			'gene_id' => 'ORCC809_01G04970',
			'e_value' => '4e-41',
			'bit_score' => '162',
			'alignment_length' => '475',
			'identity_percentage' => '26.11',
			'species' => 'orcc809',
			'common_name' => 'Ostreococcus sp RCC809',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CR10G08860' => array(
			'gene_id' => 'CR10G08860',
			'e_value' => '4e-41',
			'bit_score' => '164',
			'alignment_length' => '474',
			'identity_percentage' => '28.06',
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'phs33280' => array(
			'gene_id' => 'phs33280',
			'e_value' => '5e-41',
			'bit_score' => '164',
			'alignment_length' => '521',
			'identity_percentage' => '25.14',
			'species' => 'phs',
			'common_name' => 'Phytophtora sojae',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AC00G81870' => array(
			'gene_id' => 'AC00G81870',
			'e_value' => '1e-39',
			'bit_score' => '158',
			'alignment_length' => '477',
			'identity_percentage' => '27.88',
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OM_01G05500' => array(
			'gene_id' => 'OM_01G05500',
			'e_value' => '1e-39',
			'bit_score' => '159',
			'alignment_length' => '483',
			'identity_percentage' => '27.12',
			'species' => 'ome',
			'common_name' => 'Ostreococcus mediterraneus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ES0330G00020' => array(
			'gene_id' => 'ES0330G00020',
			'e_value' => '3e-39',
			'bit_score' => '157',
			'alignment_length' => '309',
			'identity_percentage' => '31.72',
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'FC012G00090' => array(
			'gene_id' => 'FC012G00090',
			'e_value' => '3e-39',
			'bit_score' => '156',
			'alignment_length' => '476',
			'identity_percentage' => '28.15',
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OT_01G01430' => array(
			'gene_id' => 'OT_01G01430',
			'e_value' => '1e-38',
			'bit_score' => '156',
			'alignment_length' => '492',
			'identity_percentage' => '27.44',
			'species' => 'ota',
			'common_name' => 'Ostreococcus tauri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AP00G51660' => array(
			'gene_id' => 'AP00G51660',
			'e_value' => '4e-38',
			'bit_score' => '154',
			'alignment_length' => '485',
			'identity_percentage' => '26.60',
			'species' => 'apr',
			'common_name' => 'Auxenochlorella protothecoides',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AA0005G02200' => array(
			'gene_id' => 'AA0005G02200',
			'e_value' => '7e-38',
			'bit_score' => '154',
			'alignment_length' => '485',
			'identity_percentage' => '27.01',
			'species' => 'aan',
			'common_name' => 'Aureococcus anophagefferens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CNC64A_012G00390' => array(
			'gene_id' => 'CNC64A_012G00390',
			'e_value' => '7e-36',
			'bit_score' => '147',
			'alignment_length' => '484',
			'identity_percentage' => '27.27',
			'species' => 'cnc64a',
			'common_name' => 'Chlorella sp NC64A',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'emh720040' => array(
			'gene_id' => 'emh720040',
			'e_value' => '3e-35',
			'bit_score' => '144',
			'alignment_length' => '375',
			'identity_percentage' => '32.80',
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'VC00G32420' => array(
			'gene_id' => 'VC00G32420',
			'e_value' => '2e-34',
			'bit_score' => '144',
			'alignment_length' => '472',
			'identity_percentage' => '26.06',
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ATR_00016G01260' => array(
			'gene_id' => 'ATR_00016G01260',
			'e_value' => '2e-34',
			'bit_score' => '142',
			'alignment_length' => '380',
			'identity_percentage' => '29.21',
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'emh176620' => array(
			'gene_id' => 'emh176620',
			'e_value' => '2e-30',
			'bit_score' => '130',
			'alignment_length' => '520',
			'identity_percentage' => '26.54',
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'emh331300' => array(
			'gene_id' => 'emh331300',
			'e_value' => '1e-29',
			'bit_score' => '128',
			'alignment_length' => '512',
			'identity_percentage' => '26.37',
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'emh60350' => array(
			'gene_id' => 'emh60350',
			'e_value' => '2e-29',
			'bit_score' => '123',
			'alignment_length' => '200',
			'identity_percentage' => '38.00',
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'HE0000G57170' => array(
			'gene_id' => 'HE0000G57170',
			'e_value' => '7e-27',
			'bit_score' => '119',
			'alignment_length' => '516',
			'identity_percentage' => '24.61',
			'species' => 'hsp',
			'common_name' => 'Helicosporidium sp. ',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CNC64A_383G00010' => array(
			'gene_id' => 'CNC64A_383G00010',
			'e_value' => '1e-25',
			'bit_score' => '106',
			'alignment_length' => '58',
			'identity_percentage' => '84.48',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OS09G21490' => array(
			'gene_id' => 'OS09G21490',
			'e_value' => '4e-23',
			'bit_score' => '104',
			'alignment_length' => '83',
			'identity_percentage' => '63.86',
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PP04335G00010' => array(
			'gene_id' => 'PP04335G00010',
			'e_value' => '7e-20',
			'bit_score' => '94.7',
			'alignment_length' => '273',
			'identity_percentage' => '30.40',
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'phs305450' => array(
			'gene_id' => 'phs305450',
			'e_value' => '5e-18',
			'bit_score' => '91.7',
			'alignment_length' => '375',
			'identity_percentage' => '25.87',
			'species' => 'phs',
			'common_name' => 'Phytophtora sojae',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'Naga_100253g6' => array(
			'gene_id' => 'Naga_100253g6',
			'e_value' => '2e-17',
			'bit_score' => '89.7',
			'alignment_length' => '262',
			'identity_percentage' => '27.10',
			'species' => 'nga',
			'common_name' => 'Nannochloropsis gaditana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ES0018G00110' => array(
			'gene_id' => 'ES0018G00110',
			'e_value' => '3e-16',
			'bit_score' => '87.0',
			'alignment_length' => '290',
			'identity_percentage' => '27.59',
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'HE0000G42020' => array(
			'gene_id' => 'HE0000G42020',
			'e_value' => '6e-15',
			'bit_score' => '77.0',
			'alignment_length' => '87',
			'identity_percentage' => '44.83',
			'species' => 'hsp',
			'common_name' => 'Helicosporidium sp. ',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'TP08G02140' => array(
			'gene_id' => 'TP08G02140',
			'e_value' => '9e-15',
			'bit_score' => '81.6',
			'alignment_length' => '221',
			'identity_percentage' => '27.60',
			'species' => 'tps',
			'common_name' => 'Thalassiosira pseudonana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ES0192G00290' => array(
			'gene_id' => 'ES0192G00290',
			'e_value' => '2e-14',
			'bit_score' => '80.5',
			'alignment_length' => '331',
			'identity_percentage' => '26.59',
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PTI_18G02800' => array(
			'gene_id' => 'PTI_18G02800',
			'e_value' => '9e-13',
			'bit_score' => '75.5',
			'alignment_length' => '256',
			'identity_percentage' => '28.91',
			'species' => 'ptri',
			'common_name' => 'Phaeodactylum tricornutum',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'FC001G01920' => array(
			'gene_id' => 'FC001G01920',
			'e_value' => '3e-11',
			'bit_score' => '70.5',
			'alignment_length' => '256',
			'identity_percentage' => '26.95',
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'TP05G01890' => array(
			'gene_id' => 'TP05G01890',
			'e_value' => '3e-10',
			'bit_score' => '67.4',
			'alignment_length' => '254',
			'identity_percentage' => '27.17',
			'species' => 'tps',
			'common_name' => 'Thalassiosira pseudonana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PTI_06G02290' => array(
			'gene_id' => 'PTI_06G02290',
			'e_value' => '3e-09',
			'bit_score' => '64.7',
			'alignment_length' => '257',
			'identity_percentage' => '27.24',
			'species' => 'ptri',
			'common_name' => 'Phaeodactylum tricornutum',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CNC64A_007G02290' => array(
			'gene_id' => 'CNC64A_007G02290',
			'e_value' => '8e-09',
			'bit_score' => '60.5',
			'alignment_length' => '126',
			'identity_percentage' => '30.95',
			'species' => 'cnc64a',
			'common_name' => 'Chlorella sp NC64A',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'FC019G00800' => array(
			'gene_id' => 'FC019G00800',
			'e_value' => '2e-06',
			'bit_score' => '55.5',
			'alignment_length' => '258',
			'identity_percentage' => '24.81',
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'gf' => array(
				[maximum depth reached]
			)
		)
	),
	'similarity_hits_species' => array(
		'ath' => array(
			(int) 0 => 'AT1G31230',
			(int) 1 => 'AT4G19710',
			(int) 2 => 'AT5G21060',
			(int) 3 => 'AT3G02020',
			(int) 4 => 'AT5G14060',
			(int) 5 => 'AT5G13280'
		),
		'atr' => array(
			(int) 0 => 'ATR_00002G04450',
			(int) 1 => 'ATR_00119G01000',
			(int) 2 => 'ATR_00016G01260'
		),
		'osa' => array(
			(int) 0 => 'OS08G25390',
			(int) 1 => 'OS09G12290',
			(int) 2 => 'OS12G03190',
			(int) 3 => 'OS07G20544',
			(int) 4 => 'OS11G03470',
			(int) 5 => 'OS01G70300',
			(int) 6 => 'OS03G63330',
			(int) 7 => 'OS09G21490'
		),
		'ppa' => array(
			(int) 0 => 'PP00088G00350',
			(int) 1 => 'PP00194G00960',
			(int) 2 => 'PP00169G00390',
			(int) 3 => 'PP00088G00320',
			(int) 4 => 'PP00286G00200',
			(int) 5 => 'PP00162G00320',
			(int) 6 => 'PP04335G00010'
		),
		'cvu' => array(
			(int) 0 => 'CV00G86690',
			(int) 1 => 'CV00G87360',
			(int) 2 => 'CV00G51230'
		),
		'vca' => array(
			(int) 0 => 'VC00G129980',
			(int) 1 => 'VC00G12880',
			(int) 2 => 'VC00G32420'
		),
		'ome' => array(
			(int) 0 => 'OM_10G03330',
			(int) 1 => 'OM_03G05220',
			(int) 2 => 'OM_01G05500'
		),
		'cre' => array(
			(int) 0 => 'CR00G02160',
			(int) 1 => 'CR02G09240',
			(int) 2 => 'CR10G08860'
		),
		'ota' => array(
			(int) 0 => 'OT_09G03630',
			(int) 1 => 'OT_05G05110',
			(int) 2 => 'OT_01G01430'
		),
		'mrcc299' => array(
			(int) 0 => 'MRCC299_14G01700',
			(int) 1 => 'MRCC299_10G00940',
			(int) 2 => 'MRCC299_01G04440'
		),
		'pse3' => array(
			(int) 0 => 'PI00G37250',
			(int) 1 => 'PI00G41930',
			(int) 2 => 'PI00G67540'
		),
		'prcc4223' => array(
			(int) 0 => 'RCC4223.01g10830',
			(int) 1 => 'RCC4223.101g00020',
			(int) 2 => 'RCC4223.14g02260',
			(int) 3 => 'RCC4223.16g01430'
		),
		'acg' => array(
			(int) 0 => 'AC00G36650',
			(int) 1 => 'AC00G92770',
			(int) 2 => 'AC00G81870'
		),
		'bprrcc1105' => array(
			(int) 0 => 'BPRRCC1105_10G00930',
			(int) 1 => 'BPRRCC1105_15G00250',
			(int) 2 => 'BPRRCC1105_01G01500'
		),
		'orcc809' => array(
			(int) 0 => 'ORCC809_09G02760',
			(int) 1 => 'ORCC809_05G04850',
			(int) 2 => 'ORCC809_01G04970'
		),
		'olu' => array(
			(int) 0 => 'OL09G03300',
			(int) 1 => 'OL05G04900',
			(int) 2 => 'OL01G01670'
		),
		'mpu' => array(
			(int) 0 => 'MP03G02270',
			(int) 1 => 'MP13G03550',
			(int) 2 => 'MP05G06920'
		),
		'gsu' => array(
			(int) 0 => 'gsu43680',
			(int) 1 => 'gsu111270'
		),
		'ccr' => array(
			(int) 0 => 'ccr145620',
			(int) 1 => 'ccr178580'
		),
		'cme' => array(
			(int) 0 => 'CM14G01290',
			(int) 1 => 'CM10G00160'
		),
		'apr' => array(
			(int) 0 => 'AP00G64590',
			(int) 1 => 'AP00G26920',
			(int) 2 => 'AP00G51660'
		),
		'tps' => array(
			(int) 0 => 'TP07G05850',
			(int) 1 => 'TP08G02140',
			(int) 2 => 'TP05G01890'
		),
		'nga' => array(
			(int) 0 => 'Naga_100001g91',
			(int) 1 => 'Naga_100004g167',
			(int) 2 => 'Naga_100253g6'
		),
		'aan' => array(
			(int) 0 => 'AA0025G00710',
			(int) 1 => 'AA0008G00380',
			(int) 2 => 'AA0005G02200'
		),
		'esi' => array(
			(int) 0 => 'ES0102G00310',
			(int) 1 => 'ES0330G00020',
			(int) 2 => 'ES0018G00110',
			(int) 3 => 'ES0192G00290'
		),
		'fcy' => array(
			(int) 0 => 'FC001G02950',
			(int) 1 => 'FC013G03010',
			(int) 2 => 'FC005G03510',
			(int) 3 => 'FC012G00090',
			(int) 4 => 'FC001G01920',
			(int) 5 => 'FC019G00800'
		),
		'hsp' => array(
			(int) 0 => 'HE0000G49400',
			(int) 1 => 'HE0000G26650',
			(int) 2 => 'HE0000G57170',
			(int) 3 => 'HE0000G42020'
		),
		'ptri' => array(
			(int) 0 => 'PTI_15G03410',
			(int) 1 => 'PTI_15G02630',
			(int) 2 => 'PTI_18G02800',
			(int) 3 => 'PTI_06G02290'
		),
		'phs' => array(
			(int) 0 => 'phs366730',
			(int) 1 => 'phs196490',
			(int) 2 => 'phs33280',
			(int) 3 => 'phs305450'
		),
		'cnc64a' => array(
			(int) 0 => 'CNC64A_007G03330',
			(int) 1 => 'CNC64A_012G00390',
			(int) 2 => 'CNC64A_007G02290'
		),
		'scp' => array(
			(int) 0 => 'SPBC776.03',
			(int) 1 => 'SPBC19F5.04'
		),
		'emh' => array(
			(int) 0 => 'emh307330',
			(int) 1 => 'emh720040',
			(int) 2 => 'emh176620',
			(int) 3 => 'emh331300',
			(int) 4 => 'emh60350'
		),
		'sac' => array(
			(int) 0 => 'YJR139C',
			(int) 1 => 'YER052C'
		)
	),
	'gene_id' => 'AT1G31230',
	'all_species_index' => array(
		(int) 0 => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333'
		),
		(int) 1 => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702'
		),
		(int) 2 => array(
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'tax_id' => '763042'
		),
		(int) 3 => array(
			'species' => 'aan',
			'common_name' => 'Aureococcus anophagefferens',
			'tax_id' => '44056'
		),
		(int) 4 => array(
			'species' => 'apr',
			'common_name' => 'Auxenochlorella protothecoides',
			'tax_id' => '3075'
		),
		(int) 5 => array(
			'species' => 'bprrcc1105',
			'common_name' => 'Bathycoccus prasinos',
			'tax_id' => '41875'
		),
		(int) 6 => array(
			'species' => 'cel',
			'common_name' => 'Caenorhabditis elegans',
			'tax_id' => '6239'
		),
		(int) 7 => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055'
		),
		(int) 8 => array(
			'species' => 'cnc64a',
			'common_name' => 'Chlorella sp NC64A',
			'tax_id' => '310507'
		),
		(int) 9 => array(
			'species' => 'ccr',
			'common_name' => 'Chondrus crispus',
			'tax_id' => '2769'
		),
		(int) 10 => array(
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'tax_id' => '574566'
		),
		(int) 11 => array(
			'species' => 'cme',
			'common_name' => 'Cyanidioschyzon merolae',
			'tax_id' => '45157'
		),
		(int) 12 => array(
			'species' => 'ddi',
			'common_name' => 'Dictyostelium discoideum',
			'tax_id' => '44689'
		),
		(int) 13 => array(
			'species' => 'drm',
			'common_name' => 'Drosophila melanogaster',
			'tax_id' => '7227'
		),
		(int) 14 => array(
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'tax_id' => '2880'
		),
		(int) 15 => array(
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'tax_id' => '280463'
		),
		(int) 16 => array(
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'tax_id' => '186039'
		),
		(int) 17 => array(
			'species' => 'gsu',
			'common_name' => 'Galdieria sulphuraria',
			'tax_id' => '130081'
		),
		(int) 18 => array(
			'species' => 'hsp',
			'common_name' => 'Helicosporidium sp. ',
			'tax_id' => '145475'
		),
		(int) 19 => array(
			'species' => 'hom',
			'common_name' => 'Homo sapiens',
			'tax_id' => '9606'
		),
		(int) 20 => array(
			'species' => 'mpu',
			'common_name' => 'Micromonas pusilla strain CCMP1545',
			'tax_id' => '564608'
		),
		(int) 21 => array(
			'species' => 'mrcc299',
			'common_name' => 'Micromonas sp RCC299',
			'tax_id' => '296587'
		),
		(int) 22 => array(
			'species' => 'mus',
			'common_name' => 'Mus musculus',
			'tax_id' => '10090'
		),
		(int) 23 => array(
			'species' => 'nga',
			'common_name' => 'Nannochloropsis gaditana',
			'tax_id' => '72520'
		),
		(int) 24 => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'tax_id' => '4530'
		),
		(int) 25 => array(
			'species' => 'olu',
			'common_name' => 'Ostreococcus lucimarinus',
			'tax_id' => '242159'
		),
		(int) 26 => array(
			'species' => 'ome',
			'common_name' => 'Ostreococcus mediterraneus',
			'tax_id' => '1486918'
		),
		(int) 27 => array(
			'species' => 'orcc809',
			'common_name' => 'Ostreococcus sp RCC809',
			'tax_id' => '385169'
		),
		(int) 28 => array(
			'species' => 'ota',
			'common_name' => 'Ostreococcus tauri',
			'tax_id' => '70448'
		),
		(int) 29 => array(
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'tax_id' => '5888'
		),
		(int) 30 => array(
			'species' => 'ptri',
			'common_name' => 'Phaeodactylum tricornutum',
			'tax_id' => '2850'
		),
		(int) 31 => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'tax_id' => '3218'
		),
		(int) 32 => array(
			'species' => 'phs',
			'common_name' => 'Phytophtora sojae',
			'tax_id' => '67593'
		),
		(int) 33 => array(
			'species' => 'pse3',
			'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
			'tax_id' => '1470871'
		),
		(int) 34 => array(
			'species' => 'prcc4223',
			'common_name' => 'Picochlorum_RCC4223',
			'tax_id' => '249344'
		),
		(int) 35 => array(
			'species' => 'sac',
			'common_name' => 'Saccharomyces cerevisiae strain S288C',
			'tax_id' => '4932'
		),
		(int) 36 => array(
			'species' => 'scp',
			'common_name' => 'Schizosaccharomyces pombe',
			'tax_id' => '4896'
		),
		(int) 37 => array(
			'species' => 'tps',
			'common_name' => 'Thalassiosira pseudonana',
			'tax_id' => '35128'
		),
		(int) 38 => array(
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'tax_id' => '3067'
		)
	),
	'all_species' => array(
		'atr' => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333'
		),
		'ath' => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702'
		),
		'acg' => array(
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'tax_id' => '763042'
		),
		'aan' => array(
			'species' => 'aan',
			'common_name' => 'Aureococcus anophagefferens',
			'tax_id' => '44056'
		),
		'apr' => array(
			'species' => 'apr',
			'common_name' => 'Auxenochlorella protothecoides',
			'tax_id' => '3075'
		),
		'bprrcc1105' => array(
			'species' => 'bprrcc1105',
			'common_name' => 'Bathycoccus prasinos',
			'tax_id' => '41875'
		),
		'cel' => array(
			'species' => 'cel',
			'common_name' => 'Caenorhabditis elegans',
			'tax_id' => '6239'
		),
		'cre' => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055'
		),
		'cnc64a' => array(
			'species' => 'cnc64a',
			'common_name' => 'Chlorella sp NC64A',
			'tax_id' => '310507'
		),
		'ccr' => array(
			'species' => 'ccr',
			'common_name' => 'Chondrus crispus',
			'tax_id' => '2769'
		),
		'cvu' => array(
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'tax_id' => '574566'
		),
		'cme' => array(
			'species' => 'cme',
			'common_name' => 'Cyanidioschyzon merolae',
			'tax_id' => '45157'
		),
		'ddi' => array(
			'species' => 'ddi',
			'common_name' => 'Dictyostelium discoideum',
			'tax_id' => '44689'
		),
		'drm' => array(
			'species' => 'drm',
			'common_name' => 'Drosophila melanogaster',
			'tax_id' => '7227'
		),
		'esi' => array(
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'tax_id' => '2880'
		),
		'emh' => array(
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'tax_id' => '280463'
		),
		'fcy' => array(
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'tax_id' => '186039'
		),
		'gsu' => array(
			'species' => 'gsu',
			'common_name' => 'Galdieria sulphuraria',
			'tax_id' => '130081'
		),
		'hsp' => array(
			'species' => 'hsp',
			'common_name' => 'Helicosporidium sp. ',
			'tax_id' => '145475'
		),
		'hom' => array(
			'species' => 'hom',
			'common_name' => 'Homo sapiens',
			'tax_id' => '9606'
		),
		'mpu' => array(
			'species' => 'mpu',
			'common_name' => 'Micromonas pusilla strain CCMP1545',
			'tax_id' => '564608'
		),
		'mrcc299' => array(
			'species' => 'mrcc299',
			'common_name' => 'Micromonas sp RCC299',
			'tax_id' => '296587'
		),
		'mus' => array(
			'species' => 'mus',
			'common_name' => 'Mus musculus',
			'tax_id' => '10090'
		),
		'nga' => array(
			'species' => 'nga',
			'common_name' => 'Nannochloropsis gaditana',
			'tax_id' => '72520'
		),
		'osa' => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'tax_id' => '4530'
		),
		'olu' => array(
			'species' => 'olu',
			'common_name' => 'Ostreococcus lucimarinus',
			'tax_id' => '242159'
		),
		'ome' => array(
			'species' => 'ome',
			'common_name' => 'Ostreococcus mediterraneus',
			'tax_id' => '1486918'
		),
		'orcc809' => array(
			'species' => 'orcc809',
			'common_name' => 'Ostreococcus sp RCC809',
			'tax_id' => '385169'
		),
		'ota' => array(
			'species' => 'ota',
			'common_name' => 'Ostreococcus tauri',
			'tax_id' => '70448'
		),
		'pte' => array(
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'tax_id' => '5888'
		),
		'ptri' => array(
			'species' => 'ptri',
			'common_name' => 'Phaeodactylum tricornutum',
			'tax_id' => '2850'
		),
		'ppa' => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'tax_id' => '3218'
		),
		'phs' => array(
			'species' => 'phs',
			'common_name' => 'Phytophtora sojae',
			'tax_id' => '67593'
		),
		'pse3' => array(
			'species' => 'pse3',
			'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
			'tax_id' => '1470871'
		),
		'prcc4223' => array(
			'species' => 'prcc4223',
			'common_name' => 'Picochlorum_RCC4223',
			'tax_id' => '249344'
		),
		'sac' => array(
			'species' => 'sac',
			'common_name' => 'Saccharomyces cerevisiae strain S288C',
			'tax_id' => '4932'
		),
		'scp' => array(
			'species' => 'scp',
			'common_name' => 'Schizosaccharomyces pombe',
			'tax_id' => '4896'
		),
		'tps' => array(
			'species' => 'tps',
			'common_name' => 'Thalassiosira pseudonana',
			'tax_id' => '35128'
		),
		'vca' => array(
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'tax_id' => '3067'
		)
	),
	'gene_family_types_information' => array(
		'HOMFAM' => array(
			'id' => 'HOMFAM',
			'name' => 'Homologous gene family',
			'prefix' => 'HOM',
			'gene_type' => 'coding',
			'method' => '{}',
			'ancestry' => 'homology',
			'parent_id' => ''
		),
		'ORTHOFAM' => array(
			'id' => 'ORTHOFAM',
			'name' => 'Orthologous gene family',
			'prefix' => 'ORTH',
			'gene_type' => 'coding',
			'method' => '{}',
			'ancestry' => 'orthology',
			'parent_id' => 'HOMFAM'
		)
	),
	'gene_family_types_configuration' => array(),
	'data_identifier' => 'AT1G31230',
	'data_type' => 'gene_id',
	'allow_async_use' => true,
	'gene_placeholder' => 'PP00006G00240',
	'gf_placeholder' => 'HOM03P013870',
	'title_for_layout' => 'Pico-PLAZA 3.0 : Interactive Phylogenetics Module'
)
$allowed_extra_sequences_types = array(
	'aa' => 'Protein',
	'dna' => 'DNA'
)
$allowed_editing_methods = array(
	'column' => 'Positions only',
	'row' => 'Genes only',
	'column_row' => 'Positions and Genes',
	'none' => 'No editing'
)
$allowed_tree_programs = array(
	'fasttree' => 'FastTree',
	'iqtree' => 'IQ-TREE (includes model testing)',
	'raxml' => 'RAxML',
	'phyml' => 'PhyML'
)
$allowed_msa_programs = array(
	'muscle' => 'MUSCLE',
	'mafft' => 'MAFFT'
)
$allowed_number_blasthits = array(
	(int) 0 => 'all',
	(int) 1 => (int) 20,
	(int) 2 => (int) 10,
	(int) 3 => (int) 5,
	(int) 4 => (int) 1
)
$similarity_hits_genes = array(
	'AT1G31230' => array(
		'gene_id' => 'AT1G31230',
		'e_value' => '0.0',
		'bit_score' => '1873',
		'alignment_length' => '912',
		'identity_percentage' => '100.00',
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'AT4G19710' => array(
		'gene_id' => 'AT4G19710',
		'e_value' => '0.0',
		'bit_score' => '1449',
		'alignment_length' => '850',
		'identity_percentage' => '81.06',
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'ATR_00002G04450' => array(
		'gene_id' => 'ATR_00002G04450',
		'e_value' => '0.0',
		'bit_score' => '1425',
		'alignment_length' => '872',
		'identity_percentage' => '77.98',
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'OS08G25390' => array(
		'gene_id' => 'OS08G25390',
		'e_value' => '0.0',
		'bit_score' => '1352',
		'alignment_length' => '856',
		'identity_percentage' => '74.30',
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'OS09G12290' => array(
		'gene_id' => 'OS09G12290',
		'e_value' => '0.0',
		'bit_score' => '1323',
		'alignment_length' => '891',
		'identity_percentage' => '71.83',
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'PP00088G00350' => array(
		'gene_id' => 'PP00088G00350',
		'e_value' => '0.0',
		'bit_score' => '1213',
		'alignment_length' => '882',
		'identity_percentage' => '66.44',
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'PP00194G00960' => array(
		'gene_id' => 'PP00194G00960',
		'e_value' => '0.0',
		'bit_score' => '1182',
		'alignment_length' => '887',
		'identity_percentage' => '65.39',
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'CV00G86690' => array(
		'gene_id' => 'CV00G86690',
		'e_value' => '0.0',
		'bit_score' => '1026',
		'alignment_length' => '837',
		'identity_percentage' => '62.01',
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'VC00G129980' => array(
		'gene_id' => 'VC00G129980',
		'e_value' => '0.0',
		'bit_score' => '1005',
		'alignment_length' => '845',
		'identity_percentage' => '58.34',
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'OM_10G03330' => array(
		'gene_id' => 'OM_10G03330',
		'e_value' => '0.0',
		'bit_score' => '1004',
		'alignment_length' => '857',
		'identity_percentage' => '57.29',
		'species' => 'ome',
		'common_name' => 'Ostreococcus mediterraneus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'CR00G02160' => array(
		'gene_id' => 'CR00G02160',
		'e_value' => '0.0',
		'bit_score' => '1003',
		'alignment_length' => '846',
		'identity_percentage' => '58.27',
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'OT_09G03630' => array(
		'gene_id' => 'OT_09G03630',
		'e_value' => '0.0',
		'bit_score' => '986',
		'alignment_length' => '862',
		'identity_percentage' => '55.57',
		'species' => 'ota',
		'common_name' => 'Ostreococcus tauri',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'MRCC299_14G01700' => array(
		'gene_id' => 'MRCC299_14G01700',
		'e_value' => '0.0',
		'bit_score' => '965',
		'alignment_length' => '862',
		'identity_percentage' => '55.92',
		'species' => 'mrcc299',
		'common_name' => 'Micromonas sp RCC299',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'PI00G37250' => array(
		'gene_id' => 'PI00G37250',
		'e_value' => '0.0',
		'bit_score' => '959',
		'alignment_length' => '847',
		'identity_percentage' => '56.67',
		'species' => 'pse3',
		'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'RCC4223.01g10830' => array(
		'gene_id' => 'RCC4223.01g10830',
		'e_value' => '0.0',
		'bit_score' => '959',
		'alignment_length' => '847',
		'identity_percentage' => '56.91',
		'species' => 'prcc4223',
		'common_name' => 'Picochlorum_RCC4223',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'AC00G36650' => array(
		'gene_id' => 'AC00G36650',
		'e_value' => '0.0',
		'bit_score' => '954',
		'alignment_length' => '874',
		'identity_percentage' => '54.81',
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'BPRRCC1105_10G00930' => array(
		'gene_id' => 'BPRRCC1105_10G00930',
		'e_value' => '0.0',
		'bit_score' => '945',
		'alignment_length' => '870',
		'identity_percentage' => '54.71',
		'species' => 'bprrcc1105',
		'common_name' => 'Bathycoccus prasinos',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'ORCC809_09G02760' => array(
		'gene_id' => 'ORCC809_09G02760',
		'e_value' => '0.0',
		'bit_score' => '924',
		'alignment_length' => '814',
		'identity_percentage' => '55.65',
		'species' => 'orcc809',
		'common_name' => 'Ostreococcus sp RCC809',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'OL09G03300' => array(
		'gene_id' => 'OL09G03300',
		'e_value' => '0.0',
		'bit_score' => '923',
		'alignment_length' => '811',
		'identity_percentage' => '55.24',
		'species' => 'olu',
		'common_name' => 'Ostreococcus lucimarinus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'MP03G02270' => array(
		'gene_id' => 'MP03G02270',
		'e_value' => '0.0',
		'bit_score' => '918',
		'alignment_length' => '864',
		'identity_percentage' => '53.59',
		'species' => 'mpu',
		'common_name' => 'Micromonas pusilla strain CCMP1545',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'gsu43680' => array(
		'gene_id' => 'gsu43680',
		'e_value' => '0.0',
		'bit_score' => '779',
		'alignment_length' => '926',
		'identity_percentage' => '43.95',
		'species' => 'gsu',
		'common_name' => 'Galdieria sulphuraria',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'ccr145620' => array(
		'gene_id' => 'ccr145620',
		'e_value' => '0.0',
		'bit_score' => '753',
		'alignment_length' => '805',
		'identity_percentage' => '49.44',
		'species' => 'ccr',
		'common_name' => 'Chondrus crispus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'CM14G01290' => array(
		'gene_id' => 'CM14G01290',
		'e_value' => '0.0',
		'bit_score' => '753',
		'alignment_length' => '909',
		'identity_percentage' => '44.44',
		'species' => 'cme',
		'common_name' => 'Cyanidioschyzon merolae',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'AP00G64590' => array(
		'gene_id' => 'AP00G64590',
		'e_value' => '0.0',
		'bit_score' => '742',
		'alignment_length' => '803',
		'identity_percentage' => '48.82',
		'species' => 'apr',
		'common_name' => 'Auxenochlorella protothecoides',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'RCC4223.101g00020' => array(
		'gene_id' => 'RCC4223.101g00020',
		'e_value' => '0.0',
		'bit_score' => '569',
		'alignment_length' => '827',
		'identity_percentage' => '37.00',
		'species' => 'prcc4223',
		'common_name' => 'Picochlorum_RCC4223',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P077083'
		)
	),
	'TP07G05850' => array(
		'gene_id' => 'TP07G05850',
		'e_value' => '2e-178',
		'bit_score' => '548',
		'alignment_length' => '847',
		'identity_percentage' => '36.36',
		'species' => 'tps',
		'common_name' => 'Thalassiosira pseudonana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'Naga_100001g91' => array(
		'gene_id' => 'Naga_100001g91',
		'e_value' => '1e-175',
		'bit_score' => '540',
		'alignment_length' => '889',
		'identity_percentage' => '36.33',
		'species' => 'nga',
		'common_name' => 'Nannochloropsis gaditana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'PP00169G00390' => array(
		'gene_id' => 'PP00169G00390',
		'e_value' => '5e-169',
		'bit_score' => '514',
		'alignment_length' => '462',
		'identity_percentage' => '55.63',
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'AA0025G00710' => array(
		'gene_id' => 'AA0025G00710',
		'e_value' => '5e-169',
		'bit_score' => '521',
		'alignment_length' => '883',
		'identity_percentage' => '35.79',
		'species' => 'aan',
		'common_name' => 'Aureococcus anophagefferens',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'PP00088G00320' => array(
		'gene_id' => 'PP00088G00320',
		'e_value' => '6e-167',
		'bit_score' => '498',
		'alignment_length' => '365',
		'identity_percentage' => '63.29',
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'ES0102G00310' => array(
		'gene_id' => 'ES0102G00310',
		'e_value' => '4e-166',
		'bit_score' => '516',
		'alignment_length' => '911',
		'identity_percentage' => '35.68',
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'FC001G02950' => array(
		'gene_id' => 'FC001G02950',
		'e_value' => '1e-165',
		'bit_score' => '514',
		'alignment_length' => '884',
		'identity_percentage' => '34.73',
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'HE0000G49400' => array(
		'gene_id' => 'HE0000G49400',
		'e_value' => '6e-160',
		'bit_score' => '482',
		'alignment_length' => '422',
		'identity_percentage' => '56.40',
		'species' => 'hsp',
		'common_name' => 'Helicosporidium sp. ',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'PTI_15G03410' => array(
		'gene_id' => 'PTI_15G03410',
		'e_value' => '5e-151',
		'bit_score' => '478',
		'alignment_length' => '943',
		'identity_percentage' => '34.25',
		'species' => 'ptri',
		'common_name' => 'Phaeodactylum tricornutum',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'FC013G03010' => array(
		'gene_id' => 'FC013G03010',
		'e_value' => '6e-150',
		'bit_score' => '472',
		'alignment_length' => '871',
		'identity_percentage' => '36.39',
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'phs366730' => array(
		'gene_id' => 'phs366730',
		'e_value' => '2e-148',
		'bit_score' => '474',
		'alignment_length' => '878',
		'identity_percentage' => '34.85',
		'species' => 'phs',
		'common_name' => 'Phytophtora sojae',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'CV00G87360' => array(
		'gene_id' => 'CV00G87360',
		'e_value' => '1e-127',
		'bit_score' => '396',
		'alignment_length' => '360',
		'identity_percentage' => '52.50',
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P010917'
		)
	),
	'CR02G09240' => array(
		'gene_id' => 'CR02G09240',
		'e_value' => '3e-116',
		'bit_score' => '367',
		'alignment_length' => '362',
		'identity_percentage' => '52.49',
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P067219'
		)
	),
	'CNC64A_007G03330' => array(
		'gene_id' => 'CNC64A_007G03330',
		'e_value' => '7e-116',
		'bit_score' => '366',
		'alignment_length' => '383',
		'identity_percentage' => '47.52',
		'species' => 'cnc64a',
		'common_name' => 'Chlorella sp NC64A',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P010917'
		)
	),
	'AC00G92770' => array(
		'gene_id' => 'AC00G92770',
		'e_value' => '8e-116',
		'bit_score' => '364',
		'alignment_length' => '324',
		'identity_percentage' => '55.86',
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P010917'
		)
	),
	'VC00G12880' => array(
		'gene_id' => 'VC00G12880',
		'e_value' => '2e-109',
		'bit_score' => '349',
		'alignment_length' => '369',
		'identity_percentage' => '48.51',
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P067219'
		)
	),
	'HE0000G26650' => array(
		'gene_id' => 'HE0000G26650',
		'e_value' => '4e-109',
		'bit_score' => '348',
		'alignment_length' => '363',
		'identity_percentage' => '49.59',
		'species' => 'hsp',
		'common_name' => 'Helicosporidium sp. ',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P010917'
		)
	),
	'AP00G26920' => array(
		'gene_id' => 'AP00G26920',
		'e_value' => '5e-109',
		'bit_score' => '347',
		'alignment_length' => '371',
		'identity_percentage' => '49.06',
		'species' => 'apr',
		'common_name' => 'Auxenochlorella protothecoides',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P010917'
		)
	),
	'PI00G41930' => array(
		'gene_id' => 'PI00G41930',
		'e_value' => '2e-107',
		'bit_score' => '343',
		'alignment_length' => '357',
		'identity_percentage' => '47.06',
		'species' => 'pse3',
		'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P010917'
		)
	),
	'RCC4223.14g02260' => array(
		'gene_id' => 'RCC4223.14g02260',
		'e_value' => '3e-103',
		'bit_score' => '332',
		'alignment_length' => '360',
		'identity_percentage' => '45.56',
		'species' => 'prcc4223',
		'common_name' => 'Picochlorum_RCC4223',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P010917'
		)
	),
	'MRCC299_10G00940' => array(
		'gene_id' => 'MRCC299_10G00940',
		'e_value' => '1e-92',
		'bit_score' => '305',
		'alignment_length' => '382',
		'identity_percentage' => '45.29',
		'species' => 'mrcc299',
		'common_name' => 'Micromonas sp RCC299',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P016720'
		)
	),
	'MP13G03550' => array(
		'gene_id' => 'MP13G03550',
		'e_value' => '6e-87',
		'bit_score' => '291',
		'alignment_length' => '393',
		'identity_percentage' => '43.77',
		'species' => 'mpu',
		'common_name' => 'Micromonas pusilla strain CCMP1545',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P016720'
		)
	),
	'SPBC776.03' => array(
		'gene_id' => 'SPBC776.03',
		'e_value' => '3e-85',
		'bit_score' => '284',
		'alignment_length' => '340',
		'identity_percentage' => '44.71',
		'species' => 'scp',
		'common_name' => 'Schizosaccharomyces pombe',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'OM_03G05220' => array(
		'gene_id' => 'OM_03G05220',
		'e_value' => '6e-85',
		'bit_score' => '283',
		'alignment_length' => '362',
		'identity_percentage' => '41.99',
		'species' => 'ome',
		'common_name' => 'Ostreococcus mediterraneus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P016720'
		)
	),
	'OT_05G05110' => array(
		'gene_id' => 'OT_05G05110',
		'e_value' => '1e-83',
		'bit_score' => '279',
		'alignment_length' => '270',
		'identity_percentage' => '50.37',
		'species' => 'ota',
		'common_name' => 'Ostreococcus tauri',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P016720'
		)
	),
	'ORCC809_05G04850' => array(
		'gene_id' => 'ORCC809_05G04850',
		'e_value' => '3e-81',
		'bit_score' => '273',
		'alignment_length' => '271',
		'identity_percentage' => '50.55',
		'species' => 'orcc809',
		'common_name' => 'Ostreococcus sp RCC809',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P016720'
		)
	),
	'phs196490' => array(
		'gene_id' => 'phs196490',
		'e_value' => '3e-79',
		'bit_score' => '281',
		'alignment_length' => '880',
		'identity_percentage' => '25.80',
		'species' => 'phs',
		'common_name' => 'Phytophtora sojae',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P118771'
		)
	),
	'emh307330' => array(
		'gene_id' => 'emh307330',
		'e_value' => '2e-75',
		'bit_score' => '270',
		'alignment_length' => '488',
		'identity_percentage' => '34.43',
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P001458'
		)
	),
	'OL05G04900' => array(
		'gene_id' => 'OL05G04900',
		'e_value' => '1e-71',
		'bit_score' => '244',
		'alignment_length' => '275',
		'identity_percentage' => '51.64',
		'species' => 'olu',
		'common_name' => 'Ostreococcus lucimarinus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P016720'
		)
	),
	'YJR139C' => array(
		'gene_id' => 'YJR139C',
		'e_value' => '4e-71',
		'bit_score' => '245',
		'alignment_length' => '367',
		'identity_percentage' => '40.60',
		'species' => 'sac',
		'common_name' => 'Saccharomyces cerevisiae strain S288C',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P010917'
		)
	),
	'BPRRCC1105_15G00250' => array(
		'gene_id' => 'BPRRCC1105_15G00250',
		'e_value' => '2e-64',
		'bit_score' => '229',
		'alignment_length' => '276',
		'identity_percentage' => '48.19',
		'species' => 'bprrcc1105',
		'common_name' => 'Bathycoccus prasinos',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P111978'
		)
	),
	'FC005G03510' => array(
		'gene_id' => 'FC005G03510',
		'e_value' => '3e-60',
		'bit_score' => '212',
		'alignment_length' => '286',
		'identity_percentage' => '40.56',
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P077069'
		)
	),
	'OS12G03190' => array(
		'gene_id' => 'OS12G03190',
		'e_value' => '2e-49',
		'bit_score' => '184',
		'alignment_length' => '378',
		'identity_percentage' => '32.28',
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P013981'
		)
	),
	'ATR_00119G01000' => array(
		'gene_id' => 'ATR_00119G01000',
		'e_value' => '3e-49',
		'bit_score' => '183',
		'alignment_length' => '271',
		'identity_percentage' => '40.22',
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P013981'
		)
	),
	'Naga_100004g167' => array(
		'gene_id' => 'Naga_100004g167',
		'e_value' => '6e-49',
		'bit_score' => '187',
		'alignment_length' => '471',
		'identity_percentage' => '29.30',
		'species' => 'nga',
		'common_name' => 'Nannochloropsis gaditana',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'PP00286G00200' => array(
		'gene_id' => 'PP00286G00200',
		'e_value' => '2e-48',
		'bit_score' => '186',
		'alignment_length' => '479',
		'identity_percentage' => '27.14',
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'AT5G21060' => array(
		'gene_id' => 'AT5G21060',
		'e_value' => '4e-47',
		'bit_score' => '177',
		'alignment_length' => '266',
		'identity_percentage' => '36.84',
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P013981'
		)
	),
	'AT3G02020' => array(
		'gene_id' => 'AT3G02020',
		'e_value' => '6e-46',
		'bit_score' => '178',
		'alignment_length' => '550',
		'identity_percentage' => '27.27',
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'AA0008G00380' => array(
		'gene_id' => 'AA0008G00380',
		'e_value' => '1e-45',
		'bit_score' => '173',
		'alignment_length' => '356',
		'identity_percentage' => '37.08',
		'species' => 'aan',
		'common_name' => 'Aureococcus anophagefferens',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P013981'
		)
	),
	'OS07G20544' => array(
		'gene_id' => 'OS07G20544',
		'e_value' => '3e-45',
		'bit_score' => '176',
		'alignment_length' => '479',
		'identity_percentage' => '29.02',
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'ccr178580' => array(
		'gene_id' => 'ccr178580',
		'e_value' => '3e-45',
		'bit_score' => '177',
		'alignment_length' => '485',
		'identity_percentage' => '28.04',
		'species' => 'ccr',
		'common_name' => 'Chondrus crispus',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'OS11G03470' => array(
		'gene_id' => 'OS11G03470',
		'e_value' => '1e-44',
		'bit_score' => '171',
		'alignment_length' => '389',
		'identity_percentage' => '31.88',
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P013981'
		)
	),
	'PP00162G00320' => array(
		'gene_id' => 'PP00162G00320',
		'e_value' => '1e-44',
		'bit_score' => '175',
		'alignment_length' => '479',
		'identity_percentage' => '25.89',
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'CM10G00160' => array(
		'gene_id' => 'CM10G00160',
		'e_value' => '1e-44',
		'bit_score' => '175',
		'alignment_length' => '472',
		'identity_percentage' => '29.45',
		'species' => 'cme',
		'common_name' => 'Cyanidioschyzon merolae',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'CV00G51230' => array(
		'gene_id' => 'CV00G51230',
		'e_value' => '3e-44',
		'bit_score' => '171',
		'alignment_length' => '476',
		'identity_percentage' => '27.94',
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'OS01G70300' => array(
		'gene_id' => 'OS01G70300',
		'e_value' => '3e-44',
		'bit_score' => '173',
		'alignment_length' => '471',
		'identity_percentage' => '26.75',
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'AT5G14060' => array(
		'gene_id' => 'AT5G14060',
		'e_value' => '5e-44',
		'bit_score' => '172',
		'alignment_length' => '475',
		'identity_percentage' => '26.32',
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'MRCC299_01G04440' => array(
		'gene_id' => 'MRCC299_01G04440',
		'e_value' => '6e-44',
		'bit_score' => '171',
		'alignment_length' => '482',
		'identity_percentage' => '28.42',
		'species' => 'mrcc299',
		'common_name' => 'Micromonas sp RCC299',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'OS03G63330' => array(
		'gene_id' => 'OS03G63330',
		'e_value' => '9e-44',
		'bit_score' => '172',
		'alignment_length' => '479',
		'identity_percentage' => '27.97',
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'PTI_15G02630' => array(
		'gene_id' => 'PTI_15G02630',
		'e_value' => '1e-43',
		'bit_score' => '171',
		'alignment_length' => '474',
		'identity_percentage' => '29.75',
		'species' => 'ptri',
		'common_name' => 'Phaeodactylum tricornutum',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'gsu111270' => array(
		'gene_id' => 'gsu111270',
		'e_value' => '2e-43',
		'bit_score' => '170',
		'alignment_length' => '484',
		'identity_percentage' => '29.75',
		'species' => 'gsu',
		'common_name' => 'Galdieria sulphuraria',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'OL01G01670' => array(
		'gene_id' => 'OL01G01670',
		'e_value' => '4e-43',
		'bit_score' => '168',
		'alignment_length' => '477',
		'identity_percentage' => '27.25',
		'species' => 'olu',
		'common_name' => 'Ostreococcus lucimarinus',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'YER052C' => array(
		'gene_id' => 'YER052C',
		'e_value' => '5e-42',
		'bit_score' => '166',
		'alignment_length' => '504',
		'identity_percentage' => '27.78',
		'species' => 'sac',
		'common_name' => 'Saccharomyces cerevisiae strain S288C',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'MP05G06920' => array(
		'gene_id' => 'MP05G06920',
		'e_value' => '1e-41',
		'bit_score' => '166',
		'alignment_length' => '479',
		'identity_percentage' => '27.97',
		'species' => 'mpu',
		'common_name' => 'Micromonas pusilla strain CCMP1545',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'SPBC19F5.04' => array(
		'gene_id' => 'SPBC19F5.04',
		'e_value' => '1e-41',
		'bit_score' => '165',
		'alignment_length' => '497',
		'identity_percentage' => '26.56',
		'species' => 'scp',
		'common_name' => 'Schizosaccharomyces pombe',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'RCC4223.16g01430' => array(
		'gene_id' => 'RCC4223.16g01430',
		'e_value' => '2e-41',
		'bit_score' => '165',
		'alignment_length' => '525',
		'identity_percentage' => '28.38',
		'species' => 'prcc4223',
		'common_name' => 'Picochlorum_RCC4223',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'AT5G13280' => array(
		'gene_id' => 'AT5G13280',
		'e_value' => '2e-41',
		'bit_score' => '165',
		'alignment_length' => '486',
		'identity_percentage' => '27.16',
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'BPRRCC1105_01G01500' => array(
		'gene_id' => 'BPRRCC1105_01G01500',
		'e_value' => '3e-41',
		'bit_score' => '164',
		'alignment_length' => '505',
		'identity_percentage' => '26.14',
		'species' => 'bprrcc1105',
		'common_name' => 'Bathycoccus prasinos',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'PI00G67540' => array(
		'gene_id' => 'PI00G67540',
		'e_value' => '3e-41',
		'bit_score' => '164',
		'alignment_length' => '483',
		'identity_percentage' => '28.57',
		'species' => 'pse3',
		'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'ORCC809_01G04970' => array(
		'gene_id' => 'ORCC809_01G04970',
		'e_value' => '4e-41',
		'bit_score' => '162',
		'alignment_length' => '475',
		'identity_percentage' => '26.11',
		'species' => 'orcc809',
		'common_name' => 'Ostreococcus sp RCC809',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'CR10G08860' => array(
		'gene_id' => 'CR10G08860',
		'e_value' => '4e-41',
		'bit_score' => '164',
		'alignment_length' => '474',
		'identity_percentage' => '28.06',
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'phs33280' => array(
		'gene_id' => 'phs33280',
		'e_value' => '5e-41',
		'bit_score' => '164',
		'alignment_length' => '521',
		'identity_percentage' => '25.14',
		'species' => 'phs',
		'common_name' => 'Phytophtora sojae',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'AC00G81870' => array(
		'gene_id' => 'AC00G81870',
		'e_value' => '1e-39',
		'bit_score' => '158',
		'alignment_length' => '477',
		'identity_percentage' => '27.88',
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'OM_01G05500' => array(
		'gene_id' => 'OM_01G05500',
		'e_value' => '1e-39',
		'bit_score' => '159',
		'alignment_length' => '483',
		'identity_percentage' => '27.12',
		'species' => 'ome',
		'common_name' => 'Ostreococcus mediterraneus',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'ES0330G00020' => array(
		'gene_id' => 'ES0330G00020',
		'e_value' => '3e-39',
		'bit_score' => '157',
		'alignment_length' => '309',
		'identity_percentage' => '31.72',
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'FC012G00090' => array(
		'gene_id' => 'FC012G00090',
		'e_value' => '3e-39',
		'bit_score' => '156',
		'alignment_length' => '476',
		'identity_percentage' => '28.15',
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'OT_01G01430' => array(
		'gene_id' => 'OT_01G01430',
		'e_value' => '1e-38',
		'bit_score' => '156',
		'alignment_length' => '492',
		'identity_percentage' => '27.44',
		'species' => 'ota',
		'common_name' => 'Ostreococcus tauri',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'AP00G51660' => array(
		'gene_id' => 'AP00G51660',
		'e_value' => '4e-38',
		'bit_score' => '154',
		'alignment_length' => '485',
		'identity_percentage' => '26.60',
		'species' => 'apr',
		'common_name' => 'Auxenochlorella protothecoides',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'AA0005G02200' => array(
		'gene_id' => 'AA0005G02200',
		'e_value' => '7e-38',
		'bit_score' => '154',
		'alignment_length' => '485',
		'identity_percentage' => '27.01',
		'species' => 'aan',
		'common_name' => 'Aureococcus anophagefferens',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'CNC64A_012G00390' => array(
		'gene_id' => 'CNC64A_012G00390',
		'e_value' => '7e-36',
		'bit_score' => '147',
		'alignment_length' => '484',
		'identity_percentage' => '27.27',
		'species' => 'cnc64a',
		'common_name' => 'Chlorella sp NC64A',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'emh720040' => array(
		'gene_id' => 'emh720040',
		'e_value' => '3e-35',
		'bit_score' => '144',
		'alignment_length' => '375',
		'identity_percentage' => '32.80',
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P013981'
		)
	),
	'VC00G32420' => array(
		'gene_id' => 'VC00G32420',
		'e_value' => '2e-34',
		'bit_score' => '144',
		'alignment_length' => '472',
		'identity_percentage' => '26.06',
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'ATR_00016G01260' => array(
		'gene_id' => 'ATR_00016G01260',
		'e_value' => '2e-34',
		'bit_score' => '142',
		'alignment_length' => '380',
		'identity_percentage' => '29.21',
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'emh176620' => array(
		'gene_id' => 'emh176620',
		'e_value' => '2e-30',
		'bit_score' => '130',
		'alignment_length' => '520',
		'identity_percentage' => '26.54',
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'emh331300' => array(
		'gene_id' => 'emh331300',
		'e_value' => '1e-29',
		'bit_score' => '128',
		'alignment_length' => '512',
		'identity_percentage' => '26.37',
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'emh60350' => array(
		'gene_id' => 'emh60350',
		'e_value' => '2e-29',
		'bit_score' => '123',
		'alignment_length' => '200',
		'identity_percentage' => '38.00',
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P152272'
		)
	),
	'HE0000G57170' => array(
		'gene_id' => 'HE0000G57170',
		'e_value' => '7e-27',
		'bit_score' => '119',
		'alignment_length' => '516',
		'identity_percentage' => '24.61',
		'species' => 'hsp',
		'common_name' => 'Helicosporidium sp. ',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P001404'
		)
	),
	'CNC64A_383G00010' => array(
		'gene_id' => 'CNC64A_383G00010',
		'e_value' => '1e-25',
		'bit_score' => '106',
		'alignment_length' => '58',
		'identity_percentage' => '84.48',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P095951'
		)
	),
	'OS09G21490' => array(
		'gene_id' => 'OS09G21490',
		'e_value' => '4e-23',
		'bit_score' => '104',
		'alignment_length' => '83',
		'identity_percentage' => '63.86',
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P167496'
		)
	),
	'PP04335G00010' => array(
		'gene_id' => 'PP04335G00010',
		'e_value' => '7e-20',
		'bit_score' => '94.7',
		'alignment_length' => '273',
		'identity_percentage' => '30.40',
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'gf' => array(
			'HOMFAM' => 'HOM03P002226',
			'ORTHOFAM' => 'ORTHO03P084806'
		)
	),
	'phs305450' => array(
		'gene_id' => 'phs305450',
		'e_value' => '5e-18',
		'bit_score' => '91.7',
		'alignment_length' => '375',
		'identity_percentage' => '25.87',
		'species' => 'phs',
		'common_name' => 'Phytophtora sojae',
		'gf' => array(
			'HOMFAM' => 'HOM03P005844',
			'ORTHOFAM' => 'ORTHO03P020840'
		)
	),
	'Naga_100253g6' => array(
		'gene_id' => 'Naga_100253g6',
		'e_value' => '2e-17',
		'bit_score' => '89.7',
		'alignment_length' => '262',
		'identity_percentage' => '27.10',
		'species' => 'nga',
		'common_name' => 'Nannochloropsis gaditana',
		'gf' => array(
			'HOMFAM' => 'HOM03P005844',
			'ORTHOFAM' => 'ORTHO03P020840'
		)
	),
	'ES0018G00110' => array(
		'gene_id' => 'ES0018G00110',
		'e_value' => '3e-16',
		'bit_score' => '87.0',
		'alignment_length' => '290',
		'identity_percentage' => '27.59',
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'gf' => array(
			'HOMFAM' => 'HOM03P005844',
			'ORTHOFAM' => 'ORTHO03P020840'
		)
	),
	'HE0000G42020' => array(
		'gene_id' => 'HE0000G42020',
		'e_value' => '6e-15',
		'bit_score' => '77.0',
		'alignment_length' => '87',
		'identity_percentage' => '44.83',
		'species' => 'hsp',
		'common_name' => 'Helicosporidium sp. ',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P094085'
		)
	),
	'TP08G02140' => array(
		'gene_id' => 'TP08G02140',
		'e_value' => '9e-15',
		'bit_score' => '81.6',
		'alignment_length' => '221',
		'identity_percentage' => '27.60',
		'species' => 'tps',
		'common_name' => 'Thalassiosira pseudonana',
		'gf' => array(
			'HOMFAM' => 'HOM03P005844',
			'ORTHOFAM' => 'ORTHO03P020840'
		)
	),
	'ES0192G00290' => array(
		'gene_id' => 'ES0192G00290',
		'e_value' => '2e-14',
		'bit_score' => '80.5',
		'alignment_length' => '331',
		'identity_percentage' => '26.59',
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'gf' => array(
			'HOMFAM' => 'HOM03P005844',
			'ORTHOFAM' => 'ORTHO03P081280'
		)
	),
	'PTI_18G02800' => array(
		'gene_id' => 'PTI_18G02800',
		'e_value' => '9e-13',
		'bit_score' => '75.5',
		'alignment_length' => '256',
		'identity_percentage' => '28.91',
		'species' => 'ptri',
		'common_name' => 'Phaeodactylum tricornutum',
		'gf' => array(
			'HOMFAM' => 'HOM03P005844',
			'ORTHOFAM' => 'ORTHO03P020840'
		)
	),
	'FC001G01920' => array(
		'gene_id' => 'FC001G01920',
		'e_value' => '3e-11',
		'bit_score' => '70.5',
		'alignment_length' => '256',
		'identity_percentage' => '26.95',
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'gf' => array(
			'HOMFAM' => 'HOM03P005844',
			'ORTHOFAM' => 'ORTHO03P011440'
		)
	),
	'TP05G01890' => array(
		'gene_id' => 'TP05G01890',
		'e_value' => '3e-10',
		'bit_score' => '67.4',
		'alignment_length' => '254',
		'identity_percentage' => '27.17',
		'species' => 'tps',
		'common_name' => 'Thalassiosira pseudonana',
		'gf' => array(
			'HOMFAM' => 'HOM03P005844',
			'ORTHOFAM' => 'ORTHO03P011440'
		)
	),
	'PTI_06G02290' => array(
		'gene_id' => 'PTI_06G02290',
		'e_value' => '3e-09',
		'bit_score' => '64.7',
		'alignment_length' => '257',
		'identity_percentage' => '27.24',
		'species' => 'ptri',
		'common_name' => 'Phaeodactylum tricornutum',
		'gf' => array(
			'HOMFAM' => 'HOM03P005844',
			'ORTHOFAM' => 'ORTHO03P011440'
		)
	),
	'CNC64A_007G02290' => array(
		'gene_id' => 'CNC64A_007G02290',
		'e_value' => '8e-09',
		'bit_score' => '60.5',
		'alignment_length' => '126',
		'identity_percentage' => '30.95',
		'species' => 'cnc64a',
		'common_name' => 'Chlorella sp NC64A',
		'gf' => array(
			'HOMFAM' => 'HOM03P000834',
			'ORTHOFAM' => 'ORTHO03P140803'
		)
	),
	'FC019G00800' => array(
		'gene_id' => 'FC019G00800',
		'e_value' => '2e-06',
		'bit_score' => '55.5',
		'alignment_length' => '258',
		'identity_percentage' => '24.81',
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'gf' => array(
			'HOMFAM' => 'HOM03P005844',
			'ORTHOFAM' => 'ORTHO03P165818'
		)
	)
)
$similarity_hits_species = array(
	'ath' => array(
		(int) 0 => 'AT1G31230',
		(int) 1 => 'AT4G19710',
		(int) 2 => 'AT5G21060',
		(int) 3 => 'AT3G02020',
		(int) 4 => 'AT5G14060',
		(int) 5 => 'AT5G13280'
	),
	'atr' => array(
		(int) 0 => 'ATR_00002G04450',
		(int) 1 => 'ATR_00119G01000',
		(int) 2 => 'ATR_00016G01260'
	),
	'osa' => array(
		(int) 0 => 'OS08G25390',
		(int) 1 => 'OS09G12290',
		(int) 2 => 'OS12G03190',
		(int) 3 => 'OS07G20544',
		(int) 4 => 'OS11G03470',
		(int) 5 => 'OS01G70300',
		(int) 6 => 'OS03G63330',
		(int) 7 => 'OS09G21490'
	),
	'ppa' => array(
		(int) 0 => 'PP00088G00350',
		(int) 1 => 'PP00194G00960',
		(int) 2 => 'PP00169G00390',
		(int) 3 => 'PP00088G00320',
		(int) 4 => 'PP00286G00200',
		(int) 5 => 'PP00162G00320',
		(int) 6 => 'PP04335G00010'
	),
	'cvu' => array(
		(int) 0 => 'CV00G86690',
		(int) 1 => 'CV00G87360',
		(int) 2 => 'CV00G51230'
	),
	'vca' => array(
		(int) 0 => 'VC00G129980',
		(int) 1 => 'VC00G12880',
		(int) 2 => 'VC00G32420'
	),
	'ome' => array(
		(int) 0 => 'OM_10G03330',
		(int) 1 => 'OM_03G05220',
		(int) 2 => 'OM_01G05500'
	),
	'cre' => array(
		(int) 0 => 'CR00G02160',
		(int) 1 => 'CR02G09240',
		(int) 2 => 'CR10G08860'
	),
	'ota' => array(
		(int) 0 => 'OT_09G03630',
		(int) 1 => 'OT_05G05110',
		(int) 2 => 'OT_01G01430'
	),
	'mrcc299' => array(
		(int) 0 => 'MRCC299_14G01700',
		(int) 1 => 'MRCC299_10G00940',
		(int) 2 => 'MRCC299_01G04440'
	),
	'pse3' => array(
		(int) 0 => 'PI00G37250',
		(int) 1 => 'PI00G41930',
		(int) 2 => 'PI00G67540'
	),
	'prcc4223' => array(
		(int) 0 => 'RCC4223.01g10830',
		(int) 1 => 'RCC4223.101g00020',
		(int) 2 => 'RCC4223.14g02260',
		(int) 3 => 'RCC4223.16g01430'
	),
	'acg' => array(
		(int) 0 => 'AC00G36650',
		(int) 1 => 'AC00G92770',
		(int) 2 => 'AC00G81870'
	),
	'bprrcc1105' => array(
		(int) 0 => 'BPRRCC1105_10G00930',
		(int) 1 => 'BPRRCC1105_15G00250',
		(int) 2 => 'BPRRCC1105_01G01500'
	),
	'orcc809' => array(
		(int) 0 => 'ORCC809_09G02760',
		(int) 1 => 'ORCC809_05G04850',
		(int) 2 => 'ORCC809_01G04970'
	),
	'olu' => array(
		(int) 0 => 'OL09G03300',
		(int) 1 => 'OL05G04900',
		(int) 2 => 'OL01G01670'
	),
	'mpu' => array(
		(int) 0 => 'MP03G02270',
		(int) 1 => 'MP13G03550',
		(int) 2 => 'MP05G06920'
	),
	'gsu' => array(
		(int) 0 => 'gsu43680',
		(int) 1 => 'gsu111270'
	),
	'ccr' => array(
		(int) 0 => 'ccr145620',
		(int) 1 => 'ccr178580'
	),
	'cme' => array(
		(int) 0 => 'CM14G01290',
		(int) 1 => 'CM10G00160'
	),
	'apr' => array(
		(int) 0 => 'AP00G64590',
		(int) 1 => 'AP00G26920',
		(int) 2 => 'AP00G51660'
	),
	'tps' => array(
		(int) 0 => 'TP07G05850',
		(int) 1 => 'TP08G02140',
		(int) 2 => 'TP05G01890'
	),
	'nga' => array(
		(int) 0 => 'Naga_100001g91',
		(int) 1 => 'Naga_100004g167',
		(int) 2 => 'Naga_100253g6'
	),
	'aan' => array(
		(int) 0 => 'AA0025G00710',
		(int) 1 => 'AA0008G00380',
		(int) 2 => 'AA0005G02200'
	),
	'esi' => array(
		(int) 0 => 'ES0102G00310',
		(int) 1 => 'ES0330G00020',
		(int) 2 => 'ES0018G00110',
		(int) 3 => 'ES0192G00290'
	),
	'fcy' => array(
		(int) 0 => 'FC001G02950',
		(int) 1 => 'FC013G03010',
		(int) 2 => 'FC005G03510',
		(int) 3 => 'FC012G00090',
		(int) 4 => 'FC001G01920',
		(int) 5 => 'FC019G00800'
	),
	'hsp' => array(
		(int) 0 => 'HE0000G49400',
		(int) 1 => 'HE0000G26650',
		(int) 2 => 'HE0000G57170',
		(int) 3 => 'HE0000G42020'
	),
	'ptri' => array(
		(int) 0 => 'PTI_15G03410',
		(int) 1 => 'PTI_15G02630',
		(int) 2 => 'PTI_18G02800',
		(int) 3 => 'PTI_06G02290'
	),
	'phs' => array(
		(int) 0 => 'phs366730',
		(int) 1 => 'phs196490',
		(int) 2 => 'phs33280',
		(int) 3 => 'phs305450'
	),
	'cnc64a' => array(
		(int) 0 => 'CNC64A_007G03330',
		(int) 1 => 'CNC64A_012G00390',
		(int) 2 => 'CNC64A_007G02290'
	),
	'scp' => array(
		(int) 0 => 'SPBC776.03',
		(int) 1 => 'SPBC19F5.04'
	),
	'emh' => array(
		(int) 0 => 'emh307330',
		(int) 1 => 'emh720040',
		(int) 2 => 'emh176620',
		(int) 3 => 'emh331300',
		(int) 4 => 'emh60350'
	),
	'sac' => array(
		(int) 0 => 'YJR139C',
		(int) 1 => 'YER052C'
	)
)
$gene_id = 'AT1G31230'
$all_species_index = array(
	(int) 0 => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333'
	),
	(int) 1 => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702'
	),
	(int) 2 => array(
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'tax_id' => '763042'
	),
	(int) 3 => array(
		'species' => 'aan',
		'common_name' => 'Aureococcus anophagefferens',
		'tax_id' => '44056'
	),
	(int) 4 => array(
		'species' => 'apr',
		'common_name' => 'Auxenochlorella protothecoides',
		'tax_id' => '3075'
	),
	(int) 5 => array(
		'species' => 'bprrcc1105',
		'common_name' => 'Bathycoccus prasinos',
		'tax_id' => '41875'
	),
	(int) 6 => array(
		'species' => 'cel',
		'common_name' => 'Caenorhabditis elegans',
		'tax_id' => '6239'
	),
	(int) 7 => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055'
	),
	(int) 8 => array(
		'species' => 'cnc64a',
		'common_name' => 'Chlorella sp NC64A',
		'tax_id' => '310507'
	),
	(int) 9 => array(
		'species' => 'ccr',
		'common_name' => 'Chondrus crispus',
		'tax_id' => '2769'
	),
	(int) 10 => array(
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'tax_id' => '574566'
	),
	(int) 11 => array(
		'species' => 'cme',
		'common_name' => 'Cyanidioschyzon merolae',
		'tax_id' => '45157'
	),
	(int) 12 => array(
		'species' => 'ddi',
		'common_name' => 'Dictyostelium discoideum',
		'tax_id' => '44689'
	),
	(int) 13 => array(
		'species' => 'drm',
		'common_name' => 'Drosophila melanogaster',
		'tax_id' => '7227'
	),
	(int) 14 => array(
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'tax_id' => '2880'
	),
	(int) 15 => array(
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'tax_id' => '280463'
	),
	(int) 16 => array(
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'tax_id' => '186039'
	),
	(int) 17 => array(
		'species' => 'gsu',
		'common_name' => 'Galdieria sulphuraria',
		'tax_id' => '130081'
	),
	(int) 18 => array(
		'species' => 'hsp',
		'common_name' => 'Helicosporidium sp. ',
		'tax_id' => '145475'
	),
	(int) 19 => array(
		'species' => 'hom',
		'common_name' => 'Homo sapiens',
		'tax_id' => '9606'
	),
	(int) 20 => array(
		'species' => 'mpu',
		'common_name' => 'Micromonas pusilla strain CCMP1545',
		'tax_id' => '564608'
	),
	(int) 21 => array(
		'species' => 'mrcc299',
		'common_name' => 'Micromonas sp RCC299',
		'tax_id' => '296587'
	),
	(int) 22 => array(
		'species' => 'mus',
		'common_name' => 'Mus musculus',
		'tax_id' => '10090'
	),
	(int) 23 => array(
		'species' => 'nga',
		'common_name' => 'Nannochloropsis gaditana',
		'tax_id' => '72520'
	),
	(int) 24 => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'tax_id' => '4530'
	),
	(int) 25 => array(
		'species' => 'olu',
		'common_name' => 'Ostreococcus lucimarinus',
		'tax_id' => '242159'
	),
	(int) 26 => array(
		'species' => 'ome',
		'common_name' => 'Ostreococcus mediterraneus',
		'tax_id' => '1486918'
	),
	(int) 27 => array(
		'species' => 'orcc809',
		'common_name' => 'Ostreococcus sp RCC809',
		'tax_id' => '385169'
	),
	(int) 28 => array(
		'species' => 'ota',
		'common_name' => 'Ostreococcus tauri',
		'tax_id' => '70448'
	),
	(int) 29 => array(
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'tax_id' => '5888'
	),
	(int) 30 => array(
		'species' => 'ptri',
		'common_name' => 'Phaeodactylum tricornutum',
		'tax_id' => '2850'
	),
	(int) 31 => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'tax_id' => '3218'
	),
	(int) 32 => array(
		'species' => 'phs',
		'common_name' => 'Phytophtora sojae',
		'tax_id' => '67593'
	),
	(int) 33 => array(
		'species' => 'pse3',
		'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
		'tax_id' => '1470871'
	),
	(int) 34 => array(
		'species' => 'prcc4223',
		'common_name' => 'Picochlorum_RCC4223',
		'tax_id' => '249344'
	),
	(int) 35 => array(
		'species' => 'sac',
		'common_name' => 'Saccharomyces cerevisiae strain S288C',
		'tax_id' => '4932'
	),
	(int) 36 => array(
		'species' => 'scp',
		'common_name' => 'Schizosaccharomyces pombe',
		'tax_id' => '4896'
	),
	(int) 37 => array(
		'species' => 'tps',
		'common_name' => 'Thalassiosira pseudonana',
		'tax_id' => '35128'
	),
	(int) 38 => array(
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'tax_id' => '3067'
	)
)
$all_species = array(
	'atr' => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333'
	),
	'ath' => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702'
	),
	'acg' => array(
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'tax_id' => '763042'
	),
	'aan' => array(
		'species' => 'aan',
		'common_name' => 'Aureococcus anophagefferens',
		'tax_id' => '44056'
	),
	'apr' => array(
		'species' => 'apr',
		'common_name' => 'Auxenochlorella protothecoides',
		'tax_id' => '3075'
	),
	'bprrcc1105' => array(
		'species' => 'bprrcc1105',
		'common_name' => 'Bathycoccus prasinos',
		'tax_id' => '41875'
	),
	'cel' => array(
		'species' => 'cel',
		'common_name' => 'Caenorhabditis elegans',
		'tax_id' => '6239'
	),
	'cre' => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055'
	),
	'cnc64a' => array(
		'species' => 'cnc64a',
		'common_name' => 'Chlorella sp NC64A',
		'tax_id' => '310507'
	),
	'ccr' => array(
		'species' => 'ccr',
		'common_name' => 'Chondrus crispus',
		'tax_id' => '2769'
	),
	'cvu' => array(
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'tax_id' => '574566'
	),
	'cme' => array(
		'species' => 'cme',
		'common_name' => 'Cyanidioschyzon merolae',
		'tax_id' => '45157'
	),
	'ddi' => array(
		'species' => 'ddi',
		'common_name' => 'Dictyostelium discoideum',
		'tax_id' => '44689'
	),
	'drm' => array(
		'species' => 'drm',
		'common_name' => 'Drosophila melanogaster',
		'tax_id' => '7227'
	),
	'esi' => array(
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'tax_id' => '2880'
	),
	'emh' => array(
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'tax_id' => '280463'
	),
	'fcy' => array(
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'tax_id' => '186039'
	),
	'gsu' => array(
		'species' => 'gsu',
		'common_name' => 'Galdieria sulphuraria',
		'tax_id' => '130081'
	),
	'hsp' => array(
		'species' => 'hsp',
		'common_name' => 'Helicosporidium sp. ',
		'tax_id' => '145475'
	),
	'hom' => array(
		'species' => 'hom',
		'common_name' => 'Homo sapiens',
		'tax_id' => '9606'
	),
	'mpu' => array(
		'species' => 'mpu',
		'common_name' => 'Micromonas pusilla strain CCMP1545',
		'tax_id' => '564608'
	),
	'mrcc299' => array(
		'species' => 'mrcc299',
		'common_name' => 'Micromonas sp RCC299',
		'tax_id' => '296587'
	),
	'mus' => array(
		'species' => 'mus',
		'common_name' => 'Mus musculus',
		'tax_id' => '10090'
	),
	'nga' => array(
		'species' => 'nga',
		'common_name' => 'Nannochloropsis gaditana',
		'tax_id' => '72520'
	),
	'osa' => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'tax_id' => '4530'
	),
	'olu' => array(
		'species' => 'olu',
		'common_name' => 'Ostreococcus lucimarinus',
		'tax_id' => '242159'
	),
	'ome' => array(
		'species' => 'ome',
		'common_name' => 'Ostreococcus mediterraneus',
		'tax_id' => '1486918'
	),
	'orcc809' => array(
		'species' => 'orcc809',
		'common_name' => 'Ostreococcus sp RCC809',
		'tax_id' => '385169'
	),
	'ota' => array(
		'species' => 'ota',
		'common_name' => 'Ostreococcus tauri',
		'tax_id' => '70448'
	),
	'pte' => array(
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'tax_id' => '5888'
	),
	'ptri' => array(
		'species' => 'ptri',
		'common_name' => 'Phaeodactylum tricornutum',
		'tax_id' => '2850'
	),
	'ppa' => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'tax_id' => '3218'
	),
	'phs' => array(
		'species' => 'phs',
		'common_name' => 'Phytophtora sojae',
		'tax_id' => '67593'
	),
	'pse3' => array(
		'species' => 'pse3',
		'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
		'tax_id' => '1470871'
	),
	'prcc4223' => array(
		'species' => 'prcc4223',
		'common_name' => 'Picochlorum_RCC4223',
		'tax_id' => '249344'
	),
	'sac' => array(
		'species' => 'sac',
		'common_name' => 'Saccharomyces cerevisiae strain S288C',
		'tax_id' => '4932'
	),
	'scp' => array(
		'species' => 'scp',
		'common_name' => 'Schizosaccharomyces pombe',
		'tax_id' => '4896'
	),
	'tps' => array(
		'species' => 'tps',
		'common_name' => 'Thalassiosira pseudonana',
		'tax_id' => '35128'
	),
	'vca' => array(
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'tax_id' => '3067'
	)
)
$gene_family_types_information = array(
	'HOMFAM' => array(
		'id' => 'HOMFAM',
		'name' => 'Homologous gene family',
		'prefix' => 'HOM',
		'gene_type' => 'coding',
		'method' => '{}',
		'ancestry' => 'homology',
		'parent_id' => ''
	),
	'ORTHOFAM' => array(
		'id' => 'ORTHOFAM',
		'name' => 'Orthologous gene family',
		'prefix' => 'ORTH',
		'gene_type' => 'coding',
		'method' => '{}',
		'ancestry' => 'orthology',
		'parent_id' => 'HOMFAM'
	)
)
$gene_family_types_configuration = array()
$data_identifier = 'AT1G31230'
$data_type = 'gene_id'
$allow_async_use = true
$gene_placeholder = 'PP00006G00240'
$gf_placeholder = 'HOM03P013870'
$title_for_layout = 'Pico-PLAZA 3.0 : Interactive Phylogenetics Module'
$collapse1 = ''
$collapse2 = 'collapse in'
$similarity_hit = array(
	'gene_id' => 'CNC64A_383G00010',
	'e_value' => '1e-25',
	'bit_score' => '106',
	'alignment_length' => '58',
	'identity_percentage' => '84.48',
	'gf' => array(
		'HOMFAM' => 'HOM03P000834',
		'ORTHOFAM' => 'ORTHO03P095951'
	)
)
$checked = null
$similarity_hit_gene = 'CNC64A_383G00010'
include - APP/View/Analysis/custom_tree_creation.ctp, line 169
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::render() - CORE/Cake/View/View.php, line 473
Controller::render() - CORE/Cake/Controller/Controller.php, line 963
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167
[main] - APP/webroot/index.php, line 146