Pico-PLAZA 3.0 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Email Address (optional)

Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
AT1G24200	Arabidopsis thaliana	3e-143	404	197	100.00
AT1G24190	Arabidopsis thaliana	8e-67	227	164	68.90
AT1G70060	Arabidopsis thaliana	2e-65	224	183	63.39
ATR_00090G01090	Amborella trichopoda	5e-53	188	158	59.49
AT5G15020	Arabidopsis thaliana	4e-51	183	156	60.90
AT3G01320	Arabidopsis thaliana	4e-50	180	175	54.29
OS05G01020	Oryza sativa	2e-49	178	159	59.12
PP00178G00660	Physcomitrella patens	2e-48	165	152	57.24
AT1G59890	Arabidopsis thaliana	3e-48	174	147	59.18
PP00212G00120	Physcomitrella patens	1e-47	172	152	55.92
PP00363G00060	Physcomitrella patens	2e-47	172	156	55.77
VC00G147530	Volvox carteri	6e-47	171	171	51.46
PP00403G00290	Physcomitrella patens	9e-47	170	152	56.58
CR03G08780	Chlamydomonas reinhardtii	1e-46	170	164	53.66
CV00G13480	Coccomyxa subellipsoidea C-169	2e-46	169	199	48.24
PP00101G00880	Physcomitrella patens	3e-45	166	163	52.76
RCC4223.04g02910	Picochlorum_RCC4223	2e-43	160	170	49.41
PI00G68970	Picochlorum sp. SENEW3 (SE3)	2e-43	160	164	51.22
AT1G10450	Arabidopsis thaliana	3e-43	160	159	51.57
BPRRCC1105_01G03950	Bathycoccus prasinos	3e-42	157	158	50.63
MRCC299_01G02440	Micromonas sp RCC299	3e-41	154	217	41.94
MP02G03020	Micromonas pusilla strain CCMP1545	4e-40	150	173	47.40
AT1G70030	Arabidopsis thaliana	2e-39	139	153	49.67
OS01G01960	Oryza sativa	5e-39	148	122	60.66
OL01G04190	Ostreococcus lucimarinus	1e-38	146	164	47.56
HE0000G60260	Helicosporidium sp.	3e-38	135	154	48.70
ORCC809_01G02570	Ostreococcus sp RCC809	4e-38	145	156	49.36
OM_01G02760	Ostreococcus mediterraneus	4e-38	145	157	47.77
AP00G33310	Auxenochlorella protothecoides	6e-37	132	143	48.25
OT_01G04000	Ostreococcus tauri	6e-37	142	158	47.47
PP00122G00540	Physcomitrella patens	8e-35	136	159	48.43
TP03G03670	Thalassiosira pseudonana	1e-34	125	149	44.30
CNC64A_032G00370	Chlorella sp NC64A	2e-34	125	132	50.76
AC00G27900	Asterochloris sp. Cgr-DA1pho v2.0	2e-33	131	137	51.09
MRCC299_01G02450	Micromonas sp RCC299	9e-33	130	132	52.27
FC008G06010	Fragilariopsis cylindrus	2e-27	112	152	43.42
AT5G35610	Arabidopsis thaliana	6e-26	103	152	42.11
AT1G24230	Arabidopsis thaliana	2e-25	104	156	35.90
ENSMUSG00000031622	Mus musculus	4e-25	107	259	32.82
AT1G27280	Arabidopsis thaliana	4e-24	100	137	40.88
ENSG00000127511	Homo sapiens	9e-24	103	248	31.85
ATR_00036G01080	Amborella trichopoda	1e-22	93.6	88	54.55
AT1G24250	Arabidopsis thaliana	3e-22	95.5	155	36.13
AT1G23810	Arabidopsis thaliana	4e-21	92.4	156	33.97
ES0055G00610	Ectocarpus siliculosus	6e-21	95.9	195	31.79
SPBC1734.16c	Schizosaccharomyces pombe	1e-19	91.7	218	31.65
AT1G24210	Arabidopsis thaliana	2e-19	85.9	163	33.13
AA0039G00150	Aureococcus anophagefferens	3e-19	90.5	193	33.16
AT1G27260	Arabidopsis thaliana	5e-19	85.9	163	32.52
ccr54500	Chondrus crispus	1e-17	86.3	79	44.30
AT1G27250	Arabidopsis thaliana	1e-17	80.5	83	45.78
OL05G01930	Ostreococcus lucimarinus	2e-17	83.6	138	35.51
AT1G27220	Arabidopsis thaliana	9e-17	79.0	127	37.80
MP03G06980	Micromonas pusilla strain CCMP1545	1e-16	81.6	153	35.29
AT5G15030	Arabidopsis thaliana	6e-16	77.8	72	54.17
gsu57580	Galdieria sulphuraria	8e-16	80.5	101	42.57
AT4G12020	Arabidopsis thaliana	2e-15	79.7	130	38.46
BPRRCC1105_03G02470	Bathycoccus prasinos	3e-15	77.8	168	30.36
AT1G27270	Arabidopsis thaliana	4e-15	75.1	147	38.10
AA0018G00030	Aureococcus anophagefferens	5e-14	68.9	70	50.00
Naga_100390g3	Nannochloropsis gaditana	3e-13	72.4	198	25.76
ENSMUSG00000042557	Mus musculus	4e-13	72.0	68	50.00
ENSG00000169375	Homo sapiens	4e-13	72.0	68	50.00
PTI_29G00720	Phaeodactylum tricornutum	4e-13	72.0	86	43.02
WBGene00004117	Caenorhabditis elegans	5e-13	72.0	73	46.58
FC015G01010	Fragilariopsis cylindrus	7e-13	71.2	69	49.28
AA0018G00020	Aureococcus anophagefferens	8e-13	65.5	67	46.27
emh754380	Emiliania huxleyi	8e-13	70.9	72	44.44
AT1G27240	Arabidopsis thaliana	9e-13	67.4	170	30.00
TP07G04750	Thalassiosira pseudonana	2e-12	69.7	73	43.84
PTI_10G03700	Phaeodactylum tricornutum	5e-12	68.9	68	51.47
phs105200	Phytophtora sojae	5e-12	68.6	68	50.00
YOL004W	Saccharomyces cerevisiae strain S288C	5e-12	68.6	85	40.00
ccr107580	Chondrus crispus	6e-12	68.6	68	48.53
MRCC299_05G02560	Micromonas sp RCC299	1e-11	66.6	87	43.68
OS08G25200	Oryza sativa	2e-11	62.4	72	44.44
ES0042G00150	Ectocarpus siliculosus	2e-11	66.6	87	43.68
CM17G01250	Cyanidioschyzon merolae	2e-11	66.6	68	48.53
FBgn0022764	Drosophila melanogaster	4e-11	65.9	84	42.86
AT5G15040	Arabidopsis thaliana	4e-11	60.8	65	46.15
SPBC12C2.10c	Schizosaccharomyces pombe	5e-11	65.5	72	44.44
ccr11660	Chondrus crispus	6e-11	62.4	77	42.86
AA0022G00920	Aureococcus anophagefferens	2e-10	58.5	65	47.69
OM_03G02080	Ostreococcus mediterraneus	5e-10	61.6	62	45.16
OT_05G01970	Ostreococcus tauri	2e-09	60.1	166	27.71
AA0022G00930	Aureococcus anophagefferens	9e-09	58.2	61	45.90
ORCC809_05G01930	Ostreococcus sp RCC809	1e-08	57.8	135	27.41
Naga_100500g4	Nannochloropsis gaditana	1e-08	55.5	69	40.58
DDB_G0281045	Dictyostelium discoideum	2e-08	57.4	69	43.48
PP00480G00110	Physcomitrella patens	3e-08	55.1	184	27.72
OS06G29804	Oryza sativa	4e-08	53.1	85	37.65
AT1G24220	Arabidopsis thaliana	8e-07	52.4	78	30.77

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
Edit MSA alignment