Functional clusters

Information

  • Type Gene Ontology
  • Description cell wall organization or biogenesis

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Carpinus fangiana Cfa02 3 CH_cfa_287 8 31 0.00033226
Malus domestica Chr04 3 CH_mdo_367 7 15 0.0000247512
Trifolium pratense Tp57577_TGAC_v2_LG1 3 CH_tpr_103 8 14 0.000000311758
Carpinus fangiana Cfa02 4 CH_cfa_287 8 31 0.00033226
Malus domestica Chr04 4 CH_mdo_367 7 15 0.0000247512
Trifolium pratense Tp57577_TGAC_v2_LG1 4 CH_tpr_103 8 14 0.000000311758

Available child term results

Ontology identifier Description Number of clusters
GO:0000032 cell wall mannoprotein biosynthetic process 2
GO:0009664 plant-type cell wall organization 56
GO:0009827 plant-type cell wall modification 4
GO:0009828 plant-type cell wall loosening 6
GO:0009829 cell wall modification involved in fruit ripening 2
GO:0009830 cell wall modification involved in abscission 10
GO:0009831 plant-type cell wall modification involved in multidimensional cell growth 4
GO:0009832 plant-type cell wall biogenesis 22
GO:0009833 plant-type primary cell wall biogenesis 4
GO:0009834 plant-type secondary cell wall biogenesis 66
GO:0009969 xyloglucan biosynthetic process 4
GO:0010215 cellulose microfibril organization 72
GO:0010306 rhamnogalacturonan II biosynthetic process 6
GO:0010383 cell wall polysaccharide metabolic process 26
GO:0010400 rhamnogalacturonan I side chain metabolic process 2
GO:0010401 pectic galactan metabolic process 4
GO:0010405 arabinogalactan protein metabolic process 4
GO:0010406 classical arabinogalactan protein metabolic process 8
GO:0010407 non-classical arabinogalactan protein metabolic process 4
GO:0010409 extensin metabolic process 2
GO:0010410 hemicellulose metabolic process 2
GO:0010411 xyloglucan metabolic process 10
GO:0010412 mannan metabolic process 2
GO:0010417 glucuronoxylan biosynthetic process 2
GO:0016998 cell wall macromolecule catabolic process 8
GO:0042545 cell wall modification 14
GO:0042547 cell wall modification involved in multidimensional cell growth 42
GO:0044036 cell wall macromolecule metabolic process 2
GO:0045492 xylan biosynthetic process 18
GO:0045493 xylan catabolic process 76
GO:0052324 plant-type cell wall cellulose biosynthetic process 12
GO:0052386 cell wall thickening 2
GO:0052543 callose deposition in cell wall 4
GO:0070592 cell wall polysaccharide biosynthetic process 4
GO:0071555 cell wall organization 28
GO:0071668 plant-type cell wall assembly 2
GO:0071669 plant-type cell wall organization or biogenesis 12
GO:0080157 regulation of plant-type cell wall organization or biogenesis 8
GO:1901347 negative regulation of secondary cell wall biogenesis 8
GO:1902066 regulation of cell wall pectin metabolic process 4
GO:1990937 xylan acetylation 10
GO:2000652 regulation of secondary cell wall biogenesis 8
GO:2001011 positive regulation of plant-type cell wall cellulose biosynthetic process 4

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001