Functional clusters

Information

  • Type Gene Ontology
  • Description plant-type cell wall organization or biogenesis

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brassica carinata ChrB01 3 CH_bca_389 7 24 0.0000044485
Camellia sinensis var. sinensis Chr2 3 CH_camsi_813 5 12 0.000795338
Cicer arietinum L. Ca_LG7_v3 3 CH_car_66 6 12 0.0000121247
Cardamine hirsuta Chr6 3 CH_chi_259 7 27 0.000138085
Cucumis melo chr02 3 CH_cme_281 5 13 0.000855104
Quercus lobata 9 3 CH_qlo_981 4 5 0.000552398
Brassica carinata ChrB01 4 CH_bca_389 7 24 0.0000044485
Camellia sinensis var. sinensis Chr2 4 CH_camsi_813 5 12 0.000795338
Cicer arietinum L. Ca_LG7_v3 4 CH_car_66 6 12 0.0000121247
Cardamine hirsuta Chr6 4 CH_chi_259 7 27 0.000138085
Cucumis melo chr02 4 CH_cme_281 5 13 0.000855104
Quercus lobata 9 4 CH_qlo_981 4 5 0.000552398

Available child term results

Ontology identifier Description Number of clusters
GO:0009664 plant-type cell wall organization 56
GO:0009827 plant-type cell wall modification 4
GO:0009828 plant-type cell wall loosening 6
GO:0009829 cell wall modification involved in fruit ripening 2
GO:0009830 cell wall modification involved in abscission 10
GO:0009831 plant-type cell wall modification involved in multidimensional cell growth 4
GO:0009832 plant-type cell wall biogenesis 22
GO:0009833 plant-type primary cell wall biogenesis 4
GO:0009834 plant-type secondary cell wall biogenesis 66
GO:0010215 cellulose microfibril organization 72
GO:0010306 rhamnogalacturonan II biosynthetic process 6
GO:0010400 rhamnogalacturonan I side chain metabolic process 2
GO:0010401 pectic galactan metabolic process 4
GO:0052324 plant-type cell wall cellulose biosynthetic process 12
GO:0071668 plant-type cell wall assembly 2
GO:0080157 regulation of plant-type cell wall organization or biogenesis 8
GO:1901347 negative regulation of secondary cell wall biogenesis 8
GO:1902066 regulation of cell wall pectin metabolic process 4
GO:2000652 regulation of secondary cell wall biogenesis 8
GO:2001011 positive regulation of plant-type cell wall cellulose biosynthetic process 4

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001