Functional clusters
Information
- Type Gene Ontology
- Description plant-type cell wall organization or biogenesis
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Brassica carinata | ChrB01 | 3 | CH_bca_389 | 7 | 24 | 0.0000044485 |
Camellia sinensis var. sinensis | Chr2 | 3 | CH_camsi_813 | 5 | 12 | 0.000795338 |
Cicer arietinum L. | Ca_LG7_v3 | 3 | CH_car_66 | 6 | 12 | 0.0000121247 |
Cardamine hirsuta | Chr6 | 3 | CH_chi_259 | 7 | 27 | 0.000138085 |
Cucumis melo | chr02 | 3 | CH_cme_281 | 5 | 13 | 0.000855104 |
Quercus lobata | 9 | 3 | CH_qlo_981 | 4 | 5 | 0.000552398 |
Brassica carinata | ChrB01 | 4 | CH_bca_389 | 7 | 24 | 0.0000044485 |
Camellia sinensis var. sinensis | Chr2 | 4 | CH_camsi_813 | 5 | 12 | 0.000795338 |
Cicer arietinum L. | Ca_LG7_v3 | 4 | CH_car_66 | 6 | 12 | 0.0000121247 |
Cardamine hirsuta | Chr6 | 4 | CH_chi_259 | 7 | 27 | 0.000138085 |
Cucumis melo | chr02 | 4 | CH_cme_281 | 5 | 13 | 0.000855104 |
Quercus lobata | 9 | 4 | CH_qlo_981 | 4 | 5 | 0.000552398 |
Available child term results
Ontology identifier | Description | Number of clusters |
---|---|---|
GO:0009664 | plant-type cell wall organization | 56 |
GO:0009827 | plant-type cell wall modification | 4 |
GO:0009828 | plant-type cell wall loosening | 6 |
GO:0009829 | cell wall modification involved in fruit ripening | 2 |
GO:0009830 | cell wall modification involved in abscission | 10 |
GO:0009831 | plant-type cell wall modification involved in multidimensional cell growth | 4 |
GO:0009832 | plant-type cell wall biogenesis | 22 |
GO:0009833 | plant-type primary cell wall biogenesis | 4 |
GO:0009834 | plant-type secondary cell wall biogenesis | 66 |
GO:0010215 | cellulose microfibril organization | 72 |
GO:0010306 | rhamnogalacturonan II biosynthetic process | 6 |
GO:0010400 | rhamnogalacturonan I side chain metabolic process | 2 |
GO:0010401 | pectic galactan metabolic process | 4 |
GO:0052324 | plant-type cell wall cellulose biosynthetic process | 12 |
GO:0071668 | plant-type cell wall assembly | 2 |
GO:0080157 | regulation of plant-type cell wall organization or biogenesis | 8 |
GO:1901347 | negative regulation of secondary cell wall biogenesis | 8 |
GO:1902066 | regulation of cell wall pectin metabolic process | 4 |
GO:2000652 | regulation of secondary cell wall biogenesis | 8 |
GO:2001011 | positive regulation of plant-type cell wall cellulose biosynthetic process | 4 |
Functional Clusters Experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |