Functional clusters

Information

  • Type MapMan
  • Description RNA processing.RNA modification

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Ceratophyllum demersum 7 1 CH_cde_45 8 53 0.000000792611
Ceratophyllum demersum 7 2 CH_cde_45 8 53 0.000000792611
Lotus japonicus chr6 2 CH_lja_228 4 5 0.0000166836

Available child term results

Ontology identifier Description Number of clusters
16.5.1.1 RNA processing.RNA modification.adenosine deamination.tRNA adenosine deaminase (TAD1) 8
16.5.1.2.1 RNA processing.RNA modification.adenosine deamination.TAD2-TAD3 tRNA adenosine deaminase complex.component TAD2 7
16.5.1.2.2 RNA processing.RNA modification.adenosine deamination.TAD2-TAD3 tRNA adenosine deaminase complex.component TAD3 6
16.5.10.1 RNA processing.RNA modification.histidine-tRNA maturation.histidine-tRNA guanylyltransferase (ICA) 24
16.5.11.1 RNA processing.RNA modification.tRNA-derived fragment biogenesis.T2-type RNase (RNS) 175
16.5.2.1 RNA processing.RNA modification.N6-threonylcarbamoylation.threonylcarbamoyl-AMP synthase (SUA5) 4
16.5.2.2.1 RNA processing.RNA modification.N6-threonylcarbamoylation.KEOPS/EKC threonylcarbamoyl-AMP synthase complex.component KAE1 14
16.5.2.2.2 RNA processing.RNA modification.N6-threonylcarbamoylation.KEOPS/EKC threonylcarbamoyl-AMP synthase complex.component BUD32 6
16.5.2.2.3 RNA processing.RNA modification.N6-threonylcarbamoylation.KEOPS/EKC threonylcarbamoyl-AMP synthase complex.component CGI121 6
16.5.2.2.4 RNA processing.RNA modification.N6-threonylcarbamoylation.KEOPS/EKC threonylcarbamoyl-AMP synthase complex.component PCC1 8
16.5.2.3 RNA processing.RNA modification.N6-threonylcarbamoylation.mitochondrial tRNA threonylcarbamoyl transferase 8
16.5.2.4 RNA processing.RNA modification.N6-threonylcarbamoylation.tRNA adenine-N6-methyltransferase 4
16.5.3 RNA processing.RNA modification.pseudouridylation 6
16.5.3.1 RNA processing.RNA modification.pseudouridylation.tRNA pseudouridine synthase (TruA) 9
16.5.3.3 RNA processing.RNA modification.pseudouridylation.tRNA pseudouridine synthase (TruD) 4
16.5.3.4 RNA processing.RNA modification.pseudouridylation.dual-specificity tRNA/rRNA pseudouridine synthase (RluA) 5
16.5.3.5 RNA processing.RNA modification.pseudouridylation.tRNA pseudouridine synthase (Pus10) 6
16.5.4.1 RNA processing.RNA modification.dihydrouridylation.tRNA dihydrouridine synthase 6
16.5.5.1.1 RNA processing.RNA modification.thiolation.CTU1-URM1 pathway.mercaptopyruvate sulfurtransferase (MST/RDH) 2
16.5.5.1.2 RNA processing.RNA modification.thiolation.CTU1-URM1 pathway.sulfur carrier protein (URM1) 2
16.5.5.1.3 RNA processing.RNA modification.thiolation.CTU1-URM1 pathway.adenylyltransferase (CNX5) 4
16.5.5.1.4.1 RNA processing.RNA modification.thiolation.CTU1-URM1 pathway.CTU1-CTU2 tRNA thiouridylase complex.component CTU1 8
16.5.5.1.4.2 RNA processing.RNA modification.thiolation.CTU1-URM1 pathway.CTU1-CTU2 tRNA thiouridylase complex.component CTU2 22
16.5.6.1 RNA processing.RNA modification.methylthiolation.tRNA methylthiotransferase 4
16.5.7.1.1 RNA processing.RNA modification.tRNA methylation.TRM6-TRM61 tRNA adenosine-methyltransferase complex.component TRM61 6
16.5.7.1.2 RNA processing.RNA modification.tRNA methylation.TRM6-TRM61 tRNA adenosine-methyltransferase complex.component TRM6 4
16.5.7.10 RNA processing.RNA modification.tRNA methylation.tRNA guanosine-methyltransferase (TRM5) 12
16.5.7.11 RNA processing.RNA modification.tRNA methylation.tRNA guanosine-methyltransferase (TRM10) 2
16.5.7.12 RNA processing.RNA modification.tRNA methylation.tRNA adenosine-methyltransferase (TRM13) 2
16.5.7.13 RNA processing.RNA modification.tRNA methylation.tRNA cytidine-methyltransferase (TRM140) 2
16.5.7.2.2 RNA processing.RNA modification.tRNA methylation.TRM7-TRM732/TRM734 tRNA cytidine/guanosine-methyltransferase complex.component TRM732 8
16.5.7.2.3 RNA processing.RNA modification.tRNA methylation.TRM7-TRM732/TRM734 tRNA cytidine/guanosine-methyltransferase complex.component TRM734 16
16.5.7.3.1 RNA processing.RNA modification.tRNA methylation.TRM8-TRM82 tRNA guanosine-methyltransferase complex.component TRM8 8
16.5.7.3.2 RNA processing.RNA modification.tRNA methylation.TRM8-TRM82 tRNA guanosine-methyltransferase complex.component TRM82 10
16.5.7.4 RNA processing.RNA modification.tRNA methylation.TRM9-TRM112 tRNA uridine-methyltransferase complex 2
16.5.7.4.1 RNA processing.RNA modification.tRNA methylation.TRM9-TRM112 tRNA uridine-methyltransferase complex.component TRM9 4
16.5.7.5.1 RNA processing.RNA modification.tRNA methylation.TRM11-TRM112 tRNA guanosine-methyltransferase complex.component TRM11 11
16.5.7.6 RNA processing.RNA modification.tRNA methylation.tRNA guanosine-methyltransferase (TRM1) 6
16.5.7.7 RNA processing.RNA modification.tRNA methylation.tRNA uridine-methyltransferase (TRM2) 19
16.5.7.8 RNA processing.RNA modification.tRNA methylation.tRNA guanosine-methyltransferase (TRM3) 26
16.5.7.9 RNA processing.RNA modification.tRNA methylation.tRNA cytidine-methyltransferase (TRM4) 16
16.5.8.1.1.1 RNA processing.RNA modification.mRNA methylation.adenosine N6-methylation.adenosine N6-methyltransferase complex.component MTA 2
16.5.8.1.1.2 RNA processing.RNA modification.mRNA methylation.adenosine N6-methylation.adenosine N6-methyltransferase complex.component MTB 10
16.5.8.1.1.3 RNA processing.RNA modification.mRNA methylation.adenosine N6-methylation.adenosine N6-methyltransferase complex.regulatory component FIP37 14
16.5.8.1.1.4 RNA processing.RNA modification.mRNA methylation.adenosine N6-methylation.adenosine N6-methyltransferase complex.regulatory component VIR 12
16.5.8.1.2 RNA processing.RNA modification.mRNA methylation.adenosine N6-methylation.E3 ubiquitin ligase (HAKAI) 6
16.5.8.2.1 RNA processing.RNA modification.mRNA methylation.N6-methyladenosine methylation reading.methylation reader (ECT) 13
16.5.8.3.1 RNA processing.RNA modification.mRNA methylation.N6-methyladenosine demethylation.demethylase (ALKBH9) 4
16.5.8.4.1 RNA processing.RNA modification.mRNA methylation.N6-methylated AMP degradation.N6-methylated-AMP deaminase (MAPDA/ADAL) 6
16.5.9.1 RNA processing.RNA modification.acetylation.tRNA/rRNA cytidine acetyltransferase 6
16.5.9.2 RNA processing.RNA modification.acetylation.adaptor protein 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001