Functional clusters

Information

  • Type MapMan
  • Description RNA processing.RNA modification.tRNA methylation.tRNA cytidine-methyltransferase (TRM4)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brassica carinata ChrC02 1 CH_bca_764 3 46 0.000207787
Corylus avellana 8 1 CH_cav_271 2 2 0.0000766695
Glycine max Gm05 1 CH_gma_521 2 2 0.000379557
Lupinus albus Lalb_Chr23 1 CH_lal_312 2 2 0.000314895
Lonicera japonica GWHAAZE00000002 1 CH_lonja_444 2 3 0.000179657
Physcomitrium patens Chr15 1 CH_ppa_104 2 2 0.0000612726
Papaver somniferum NC_039358.1 1 CH_pso_58 5 10 0.0000000000000102134
Sapria himalayana scaffold1_25991295 1 CH_shi_29 3 4 0.0000000196176
Brassica carinata ChrC02 2 CH_bca_764 3 46 0.000207787
Corylus avellana 8 2 CH_cav_271 2 2 0.0000766695
Glycine max Gm05 2 CH_gma_521 2 2 0.000379557
Lupinus albus Lalb_Chr23 2 CH_lal_312 2 2 0.000314895
Lonicera japonica GWHAAZE00000002 2 CH_lonja_444 2 3 0.000179657
Physcomitrium patens Chr15 2 CH_ppa_104 2 2 0.0000612726
Papaver somniferum NC_039358.1 2 CH_pso_58 5 10 0.0000000000000102134
Sapria himalayana scaffold1_25991295 2 CH_shi_29 3 4 0.0000000196176

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001