Functional clusters

Information

  • Type MapMan
  • Description RNA processing.RNA modification.tRNA methylation.tRNA guanosine-methyltransferase (TRM3)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Amborella trichopoda AmTr_v1.0_scaffold00002 1 CH_atr_196 2 2 0.0000794407
Corylus avellana 4 1 CH_cav_29 4 4 0.00000000000135219
Chara braunii BFEA01000233 1 CH_cbr_28 3 6 0.000000155193
Ceratophyllum demersum 10 1 CH_cde_18 3 3 0.00000000935703
Citrullus lanatus CG_Chr10 1 CH_cla_128 2 2 0.0000887115
Nicotiana tabacum Nitab4.5_0000500 1 CH_nta_108 2 2 0.000109727
Rhododendron simsii chr11 1 CH_rsi_354 2 2 0.0000645307
Salvia bowleyana GWHASIU00000001 1 CH_sbo_108 3 3 0.00000000310517
Sequoiadendron giganteum chr5 1 CH_sgi_444 3 4 0.000000014239
Selenicereus undatus Scaffold_33677 1 CH_sun_135 2 2 0.0000726639
Vaccinium macrocarpon chr3_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_255 2 2 0.0000929238
Vigna mungo CM024069.1 1 CH_vmu_36 4 8 0.0000000000566483
Vitis vinifera chrUn 1 CH_vvi_285 2 2 0.000076063
Amborella trichopoda AmTr_v1.0_scaffold00002 2 CH_atr_196 2 2 0.0000794407
Corylus avellana 4 2 CH_cav_29 4 4 0.00000000000135219
Chara braunii BFEA01000233 2 CH_cbr_28 3 6 0.000000155193
Ceratophyllum demersum 10 2 CH_cde_18 3 3 0.00000000935703
Citrullus lanatus CG_Chr10 2 CH_cla_128 2 2 0.0000887115
Nicotiana tabacum Nitab4.5_0000500 2 CH_nta_108 2 2 0.000109727
Rhododendron simsii chr11 2 CH_rsi_354 2 2 0.0000645307
Salvia bowleyana GWHASIU00000001 2 CH_sbo_108 3 3 0.00000000310517
Sequoiadendron giganteum chr5 2 CH_sgi_444 3 4 0.000000014239
Selenicereus undatus Scaffold_33677 2 CH_sun_135 2 2 0.0000726639
Vaccinium macrocarpon chr3_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_255 2 2 0.0000929238
Vigna mungo CM024069.1 2 CH_vmu_36 4 8 0.0000000000566483
Vitis vinifera chrUn 2 CH_vvi_285 2 2 0.000076063

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001