Functional clusters

Information

  • Type MapMan
  • Description RNA processing.RNA modification.thiolation.CTU1-URM1 pathway.CTU1-CTU2 tRNA thiouridylase complex.component CTU2

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr1 1 CH_acertr_383 2 3 0.000211484
Brassica carinata Contig1197 1 CH_bca_605 2 3 0.0000641286
Malus domestica Chr12 1 CH_mdo_375 2 2 0.0000379212
Nelumbo nucifera chr8 1 CH_nnu_274 2 2 0.0000436015
Pisum sativum chr3LG5 1 CH_psa_315 2 4 0.000312965
Quercus lobata 7 1 CH_qlo_747 2 3 0.000154883
Rhododendron simsii chr03 1 CH_rsi_93 5 37 0.0000000000566269
Simmondsia chinensis GWHAASQ00000013 1 CH_sci_142 2 2 0.0000851426
Sapria himalayana scaffold77_2072970 1 CH_shi_65 2 3 0.0000571804
Trochodendron aralioides group2 1 CH_tar_325 2 2 0.00018011
Vanilla planifolia CM028158.1 1 CH_vpl_149 2 2 0.000073888
Acer truncatum chr1 2 CH_acertr_383 2 3 0.000211484
Brassica carinata Contig1197 2 CH_bca_605 2 3 0.0000641286
Malus domestica Chr12 2 CH_mdo_375 2 2 0.0000379212
Nelumbo nucifera chr8 2 CH_nnu_274 2 2 0.0000436015
Pisum sativum chr3LG5 2 CH_psa_315 2 4 0.000312965
Quercus lobata 7 2 CH_qlo_747 2 3 0.000154883
Rhododendron simsii chr03 2 CH_rsi_93 5 37 0.0000000000566269
Simmondsia chinensis GWHAASQ00000013 2 CH_sci_142 2 2 0.0000851426
Sapria himalayana scaffold77_2072970 2 CH_shi_65 2 3 0.0000571804
Trochodendron aralioides group2 2 CH_tar_325 2 2 0.00018011
Vanilla planifolia CM028158.1 2 CH_vpl_149 2 2 0.000073888

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001