Functional clusters

Information

  • Type MapMan
  • Description RNA processing.RNA modification.pseudouridylation.tRNA pseudouridine synthase (TruA)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Hydrangea macrophylla Hma1.2p1_0358F.1 1 CH_hma_397 2 2 0.000666519
Lactuca sativa Lsat_1_v8_lg_1 1 CH_lsa_532 2 2 0.00077101
Medicago truncatula chr4 1 CH_mtr_181 4 6 0.00000000065531
Sequoiadendron giganteum chr4 1 CH_sgi_207 5 7 0.000000000000223507
Sequoiadendron giganteum chr3 1 CH_sgi_564 3 3 0.00000042718
Hydrangea macrophylla Hma1.2p1_0358F.1 2 CH_hma_397 2 2 0.000666519
Lactuca sativa Lsat_1_v8_lg_1 2 CH_lsa_532 2 2 0.00077101
Sequoiadendron giganteum chr4 2 CH_sgi_207 5 7 0.000000000000223507
Sequoiadendron giganteum chr3 2 CH_sgi_564 3 3 0.00000042718

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001