Functional clusters
Information
- Type MapMan
- Description RNA processing.RNA modification.pseudouridylation
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr13 | 1 | CH_acertr_452 | 4 | 39 | 0.000260616 |
| Arabidopsis lyrata | scaffold_1 | 1 | CH_aly_102 | 4 | 6 | 0.0000000395682 |
| Carica papaya | supercontig_26 | 1 | CH_cpa_141 | 4 | 31 | 0.0000802605 |
| Acer truncatum | chr13 | 2 | CH_acertr_452 | 4 | 39 | 0.000260616 |
| Arabidopsis lyrata | scaffold_1 | 2 | CH_aly_102 | 4 | 6 | 0.0000000395682 |
| Carica papaya | supercontig_26 | 2 | CH_cpa_141 | 4 | 31 | 0.0000802605 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| 16.5.3.1 | RNA processing.RNA modification.pseudouridylation.tRNA pseudouridine synthase (TruA) | 9 |
| 16.5.3.3 | RNA processing.RNA modification.pseudouridylation.tRNA pseudouridine synthase (TruD) | 4 |
| 16.5.3.4 | RNA processing.RNA modification.pseudouridylation.dual-specificity tRNA/rRNA pseudouridine synthase (RluA) | 5 |
| 16.5.3.5 | RNA processing.RNA modification.pseudouridylation.tRNA pseudouridine synthase (Pus10) | 6 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |