Functional clusters

Information

  • Type MapMan
  • Description RNA processing.RNA modification.tRNA-derived fragment biogenesis.T2-type RNase (RNS)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-1 1 CH_aar_243 2 2 0.000547395
Actinidia chinensis Lachesis_group11 1 CH_ach_59 3 3 0.00000247874
Actinidia chinensis Lachesis_group16 1 CH_ach_68 3 4 0.00000991206
Arabidopsis lyrata scaffold_1 1 CH_aly_369 2 2 0.000396027
Avicennia marina ScioBoG_102831_HRSCAF_103044 1 CH_ama_122 2 2 0.000517331
Amaranthus hybridus AmaHy_arrow1_Scaffold_3 1 CH_amhyb_6 6 7 5.59236e-17
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.15 1 CH_arhy_279 4 16 0.000000874621
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.05 1 CH_arhy_479 4 52 0.00012908
Arabidopsis thaliana Chr1 1 CH_ath_352 2 2 0.000286492
Brassica napus A09 1 CH_bna_214 3 3 0.000000187912
Brassica oleracea C8 1 CH_bol_409 2 2 0.000686409
Brassica rapa A09 1 CH_bra_91 3 3 0.000000154824
Beta vulgaris Chr6_EL10_PGA_scaffold0 1 CH_bvu_9 6 6 1.83872e-17
Cannabis sativa NC_044370.1 1 CH_cansat_196 3 13 0.0000369569
Cannabis sativa NC_044379.1 1 CH_cansat_404 2 2 0.000984963
Capsicum annuum PGAv.1.6.scaffold584 1 CH_can_193 3 5 0.00000358182
Cicer arietinum L. Ca_LG2_v3 1 CH_car_54 3 4 0.00000036343
Coffea canephora chr5 1 CH_ccan_260 3 52 0.000171815
Coffea canephora chr11 1 CH_ccan_6 5 12 0.00000000000000251486
Cardamine hirsuta Chr1 1 CH_chi_424 2 2 0.000691204
Carya illinoinensis Chr05 1 CH_cil_124 4 4 0.000000000050012
Citrullus lanatus CG_Chr10 1 CH_cla_9 6 9 0.0000000000000311641
Cucumis melo chr10 1 CH_cme_308 2 2 0.000667111
Corchorus olitorius AWUE01018132.1 1 CH_col_80 2 2 0.000292099
Carica papaya supercontig_128 1 CH_cpa_15 4 4 0.0000000000386679
Chenopodium quinoa C_Quinoa_Scaffold_3751 1 CH_cqu_12 9 9 1.79247e-26
Chenopodium quinoa C_Quinoa_Scaffold_1214 1 CH_cqu_9 10 10 5.52156e-30
Capsella rubella scaffold_1 1 CH_cru_423 2 2 0.000731154
Cucumis sativus L. chr3 1 CH_csa_172 4 24 0.0000131693
Daucus carota DCARv2_Chr9 1 CH_dca_478 2 2 0.000956663
Davidia involucrata GWHABJS00000008 1 CH_din_151 3 3 0.000000619075
Durio zibethinus NW_019167926.1 1 CH_dzi_131 3 3 0.00000146619
Durio zibethinus NW_019167882.1 1 CH_dzi_29 5 6 0.000000000000623578
Erythranthe guttata scaffold_12 1 CH_egut_467 2 2 0.000728147
Gossypium hirsutum A06 1 CH_ghi_347 3 3 0.00000189404
Glycine max Gm02 1 CH_gma_88 4 4 0.000000000223929
Gossypium raimondii Chr11 1 CH_gra_43 8 79 0.000000000000129157
Helianthus annuus HanXRQChr08 1 CH_han_139 5 25 0.000000000111769
Hydrangea macrophylla Hma1.2p1_0795F.1 1 CH_hma_267 2 2 0.000111086
Lupinus albus Lalb_Chr10 1 CH_lal_133 3 4 0.00000472563
Lonicera japonica GWHAAZE00000006 1 CH_lonja_612 2 2 0.000598874
Lactuca sativa Lsat_1_v8_lg_8 1 CH_lsa_163 3 3 0.0000000396314
Magnolia biondii Chr01 1 CH_mbi_132 4 6 0.0000000157655
Magnolia biondii Chr07 1 CH_mbi_162 4 9 0.000000132312
Magnolia biondii Chr05 1 CH_mbi_237 4 18 0.00000320474
Magnolia biondii Chr04 1 CH_mbi_91 4 4 0.00000000105166
Malus domestica Chr13 1 CH_mdo_257 3 3 0.000000981464
Malus domestica Chr15 1 CH_mdo_403 3 8 0.0000549099
Manihot esculenta Chromosome04 1 CH_mes_315 3 18 0.0000911456
Manihot esculenta Chromosome05 1 CH_mes_498 2 2 0.000915947
Medicago truncatula chr5 1 CH_mtr_99 6 9 0.000000000000105001
Nelumbo nucifera chr4 1 CH_nnu_70 4 5 0.00000000481819
Nicotiana tabacum Nitab4.5_0000040 1 CH_nta_166 2 2 0.000658364
Oryza sativa ssp. japonica chr07 1 CH_osa_136 3 4 0.000000585672
Petunia axillaris Peaxi162Scf00457 1 CH_pax_132 3 3 0.00000337844
Petunia axillaris Peaxi162Scf00023 1 CH_pax_176 3 6 0.0000674975
Petunia axillaris Peaxi162Scf00222 1 CH_pax_48 4 4 0.00000000142625
Punica granatum NC_045132.1 1 CH_pgr_349 2 3 0.000675279
Pisum sativum chr2LG1 1 CH_psa_33 5 6 0.00000000000145517
Papaver somniferum NW_020622713.1 1 CH_pso_173 4 9 0.00000000785622
Populus trichocarpa Chr10 1 CH_ptr_545 2 2 0.000867002
Populus trichocarpa Chr08 1 CH_ptr_546 2 2 0.000867002
Phaseolus vulgaris Chr04 1 CH_pvu_183 5 58 0.00000127004
Phaseolus vulgaris Chr06 1 CH_pvu_193 3 3 0.00000231593
Quercus lobata 3 1 CH_qlo_607 3 5 0.0000223787
Salvia bowleyana GWHASIU00000007 1 CH_sbo_342 2 2 0.000136494
Salix brachista GWHAAZH00000010 1 CH_sbr_390 2 2 0.00063014
Salix brachista GWHAAZH00000008 1 CH_sbr_391 2 2 0.00063014
Simmondsia chinensis GWHAASQ00000013 1 CH_sci_263 2 2 0.000510856
Simmondsia chinensis GWHAASQ00000004 1 CH_sci_264 2 2 0.000510856
Sechium edule LG06 1 CH_sed_228 3 6 0.0000854112
Sechium edule LG08 1 CH_sed_270 3 8 0.000238968
Sequoiadendron giganteum chr5 1 CH_sgi_1370 2 2 0.000730727
Sequoiadendron giganteum chr2 1 CH_sgi_1371 2 2 0.000730727
Sequoiadendron giganteum chr11 1 CH_sgi_1372 2 2 0.000730727
Selaginella moellendorffii scaffold_6 1 CH_smo_121 2 2 0.000280112
Schrenkiella parvula ch1-1 1 CH_spa_298 2 2 0.00078734
Solanum pennellii Spenn-ch05 1 CH_spe_569 2 2 0.00093406
Solanum tuberosum ST4.03ch07 1 CH_stu_126 4 7 0.00000000466098
Trochodendron aralioides group16 1 CH_tar_558 2 2 0.000900549
Theobroma cacao Chromosome_10 1 CH_tca_10 9 15 6.71463e-23
Tarenaya hassleriana NW_010961290.1 1 CH_tha_184 2 2 0.000419082
Trifolium pratense Tp57577_TGAC_v2_LG3 1 CH_tpr_152 3 4 0.00000288747
Tripterygium wilfordii NC_052233.1 1 CH_twi_168 3 3 0.0000460639
Tripterygium wilfordii NC_052253.1 1 CH_twi_35 7 21 0.00000000000506874
Utricularia gibba unitig_26 1 CH_ugi_259 2 2 0.000440755
Zea mays 3 1 CH_zma_225 2 2 0.000306788
Aethionema arabicum LG-1 2 CH_aar_243 2 2 0.000547395
Actinidia chinensis Lachesis_group11 2 CH_ach_59 3 3 0.00000247874
Actinidia chinensis Lachesis_group16 2 CH_ach_68 3 4 0.00000991206
Arabidopsis lyrata scaffold_1 2 CH_aly_369 2 2 0.000396027
Avicennia marina ScioBoG_102831_HRSCAF_103044 2 CH_ama_122 2 2 0.000517331
Amaranthus hybridus AmaHy_arrow1_Scaffold_3 2 CH_amhyb_6 6 7 5.59236e-17
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.15 2 CH_arhy_279 4 16 0.000000874621
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.05 2 CH_arhy_479 4 52 0.00012908
Arabidopsis thaliana Chr1 2 CH_ath_352 2 2 0.000286492
Brassica oleracea C8 2 CH_bol_409 2 2 0.000686409
Brassica rapa A09 2 CH_bra_91 3 3 0.000000154824
Beta vulgaris Chr6_EL10_PGA_scaffold0 2 CH_bvu_9 6 6 1.83872e-17
Cannabis sativa NC_044370.1 2 CH_cansat_196 3 13 0.0000369569
Cannabis sativa NC_044379.1 2 CH_cansat_404 2 2 0.000984963
Capsicum annuum PGAv.1.6.scaffold584 2 CH_can_193 3 5 0.00000358182
Cicer arietinum L. Ca_LG2_v3 2 CH_car_54 3 4 0.00000036343
Coffea canephora chr5 2 CH_ccan_260 3 52 0.000171815
Coffea canephora chr11 2 CH_ccan_6 5 12 0.00000000000000251486
Cardamine hirsuta Chr1 2 CH_chi_424 2 2 0.000691204
Carya illinoinensis Chr05 2 CH_cil_124 4 4 0.000000000050012
Citrullus lanatus CG_Chr10 2 CH_cla_9 6 9 0.0000000000000311641
Cucumis melo chr10 2 CH_cme_308 2 2 0.000667111
Corchorus olitorius AWUE01018132.1 2 CH_col_80 2 2 0.000292099
Carica papaya supercontig_128 2 CH_cpa_15 4 4 0.0000000000386679
Chenopodium quinoa C_Quinoa_Scaffold_3751 2 CH_cqu_12 9 9 1.79247e-26
Chenopodium quinoa C_Quinoa_Scaffold_1214 2 CH_cqu_9 10 10 5.52156e-30
Capsella rubella scaffold_1 2 CH_cru_423 2 2 0.000731154
Cucumis sativus L. chr3 2 CH_csa_172 4 24 0.0000131693
Daucus carota DCARv2_Chr9 2 CH_dca_478 2 2 0.000956663
Davidia involucrata GWHABJS00000008 2 CH_din_151 3 3 0.000000619075
Durio zibethinus NW_019167926.1 2 CH_dzi_131 3 3 0.00000146619
Durio zibethinus NW_019167882.1 2 CH_dzi_29 5 6 0.000000000000623578
Eucalyptus grandis Chr07 2 CH_egr_384 3 3 0.0000000205534
Erythranthe guttata scaffold_12 2 CH_egut_467 2 2 0.000728147
Gossypium hirsutum A06 2 CH_ghi_347 3 3 0.00000189404
Gossypium hirsutum D10 2 CH_ghi_653 3 11 0.000311983
Glycine max Gm02 2 CH_gma_88 4 4 0.000000000223929
Gossypium raimondii Chr11 2 CH_gra_43 8 79 0.000000000000129157
Helianthus annuus HanXRQChr08 2 CH_han_139 5 25 0.000000000111769
Hydrangea macrophylla Hma1.2p1_0795F.1 2 CH_hma_267 2 2 0.000111086
Lupinus albus Lalb_Chr10 2 CH_lal_133 3 4 0.00000472563
Lotus japonicus chr2 2 CH_lja_373 2 2 0.000429046
Lonicera japonica GWHAAZE00000006 2 CH_lonja_612 2 2 0.000598874
Lactuca sativa Lsat_1_v8_lg_8 2 CH_lsa_163 3 3 0.0000000396314
Magnolia biondii Chr01 2 CH_mbi_132 4 6 0.0000000157655
Magnolia biondii Chr07 2 CH_mbi_162 4 9 0.000000132312
Magnolia biondii Chr05 2 CH_mbi_237 4 18 0.00000320474
Magnolia biondii Chr04 2 CH_mbi_91 4 4 0.00000000105166
Malus domestica Chr13 2 CH_mdo_257 3 3 0.000000981464
Malus domestica Chr15 2 CH_mdo_403 3 8 0.0000549099
Manihot esculenta Chromosome04 2 CH_mes_315 3 18 0.0000911456
Manihot esculenta Chromosome05 2 CH_mes_498 2 2 0.000915947
Nelumbo nucifera chr4 2 CH_nnu_70 4 5 0.00000000481819
Nicotiana tabacum Nitab4.5_0000040 2 CH_nta_166 2 2 0.000658364
Oryza sativa ssp. japonica chr07 2 CH_osa_136 3 4 0.000000585672
Petunia axillaris Peaxi162Scf00457 2 CH_pax_132 3 3 0.00000337844
Petunia axillaris Peaxi162Scf00023 2 CH_pax_176 3 6 0.0000674975
Petunia axillaris Peaxi162Scf00222 2 CH_pax_48 4 4 0.00000000142625
Punica granatum NC_045132.1 2 CH_pgr_349 2 3 0.000675279
Pisum sativum chr2LG1 2 CH_psa_33 5 6 0.00000000000145517
Papaver somniferum NW_020622713.1 2 CH_pso_173 4 9 0.00000000785622
Populus trichocarpa Chr10 2 CH_ptr_545 2 2 0.000867002
Populus trichocarpa Chr08 2 CH_ptr_546 2 2 0.000867002
Phaseolus vulgaris Chr04 2 CH_pvu_183 5 58 0.00000127004
Phaseolus vulgaris Chr06 2 CH_pvu_193 3 3 0.00000231593
Quercus lobata 3 2 CH_qlo_607 3 5 0.0000223787
Salvia bowleyana GWHASIU00000007 2 CH_sbo_342 2 2 0.000136494
Salix brachista GWHAAZH00000010 2 CH_sbr_390 2 2 0.00063014
Salix brachista GWHAAZH00000008 2 CH_sbr_391 2 2 0.00063014
Simmondsia chinensis GWHAASQ00000013 2 CH_sci_263 2 2 0.000510856
Simmondsia chinensis GWHAASQ00000004 2 CH_sci_264 2 2 0.000510856
Sechium edule LG06 2 CH_sed_228 3 6 0.0000854112
Sechium edule LG08 2 CH_sed_270 3 8 0.000238968
Sequoiadendron giganteum chr5 2 CH_sgi_1370 2 2 0.000730727
Sequoiadendron giganteum chr2 2 CH_sgi_1371 2 2 0.000730727
Sequoiadendron giganteum chr11 2 CH_sgi_1372 2 2 0.000730727
Selaginella moellendorffii scaffold_6 2 CH_smo_121 2 2 0.000280112
Schrenkiella parvula ch1-1 2 CH_spa_298 2 2 0.00078734
Solanum pennellii Spenn-ch05 2 CH_spe_569 2 2 0.00093406
Solanum tuberosum ST4.03ch07 2 CH_stu_126 4 7 0.00000000466098
Trochodendron aralioides group16 2 CH_tar_558 2 2 0.000900549
Theobroma cacao Chromosome_10 2 CH_tca_10 9 15 6.71463e-23
Tarenaya hassleriana NW_010961290.1 2 CH_tha_184 2 2 0.000419082
Trifolium pratense Tp57577_TGAC_v2_LG3 2 CH_tpr_152 3 4 0.00000288747
Tripterygium wilfordii NC_052233.1 2 CH_twi_168 3 3 0.0000460639
Tripterygium wilfordii NC_052253.1 2 CH_twi_35 7 21 0.00000000000506874
Utricularia gibba unitig_26 2 CH_ugi_259 2 2 0.000440755
Zea mays 3 2 CH_zma_225 2 2 0.000306788

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001