Functional clusters

Information

  • Type MapMan
  • Description RNA processing.RNA modification.histidine-tRNA maturation.histidine-tRNA guanylyltransferase (ICA)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr10 1 CH_acertr_562 2 2 0.00070497
Acer truncatum chr10 1 CH_acertr_563 2 2 0.00070497
Glycine max Gm16 1 CH_gma_455 2 2 0.000227734
Helianthus annuus HanXRQChr10 1 CH_han_78 4 4 0.000000000000865614
Lonicera japonica GWHAAZE00000007 1 CH_lonja_552 2 2 0.000359324
Rosa chinensis RcHm_v2.0_Chr2 1 CH_rch_599 2 2 0.000119596
Sapria himalayana scaffold80_1929857 1 CH_shi_165 2 3 0.000171536
Solanum pennellii Spenn-ch04 1 CH_spe_343 2 3 0.000133434
Solanum tuberosum ST4.03ch04 1 CH_stu_421 3 38 0.000132716
Trochodendron aralioides group5 1 CH_tar_368 2 2 0.00018011
Vaccinium macrocarpon chr7_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_434 2 2 0.000929238
Vanilla planifolia CM028160.1 1 CH_vpl_83 3 14 0.00000297975
Acer truncatum chr10 2 CH_acertr_562 2 2 0.00070497
Acer truncatum chr10 2 CH_acertr_563 2 2 0.00070497
Glycine max Gm16 2 CH_gma_455 2 2 0.000227734
Helianthus annuus HanXRQChr10 2 CH_han_78 4 4 0.000000000000865614
Lonicera japonica GWHAAZE00000007 2 CH_lonja_552 2 2 0.000359324
Rosa chinensis RcHm_v2.0_Chr2 2 CH_rch_599 2 2 0.000119596
Sapria himalayana scaffold80_1929857 2 CH_shi_165 2 3 0.000171536
Solanum pennellii Spenn-ch04 2 CH_spe_343 2 3 0.000133434
Solanum tuberosum ST4.03ch04 2 CH_stu_421 3 38 0.000132716
Trochodendron aralioides group5 2 CH_tar_368 2 2 0.00018011
Vaccinium macrocarpon chr7_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_434 2 2 0.000929238
Vanilla planifolia CM028160.1 2 CH_vpl_83 3 14 0.00000297975

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001