Functional clusters

Information

  • Type MapMan
  • Description RNA processing.RNA modification.tRNA methylation.tRNA uridine-methyltransferase (TRM2)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr3 1 CH_acertr_430 2 2 0.000211491
Actinidia chinensis Lachesis_group13 1 CH_ach_199 2 2 0.000325928
Amaranthus hybridus AmaHy_arrow1_Scaffold_1 1 CH_amhyb_205 2 2 0.000252525
Brassica carinata ChrC01 1 CH_bca_198 3 4 0.0000000274167
Brassica napus C03 1 CH_bna_84 4 9 0.00000000016891
Brassica oleracea C3 1 CH_bol_129 3 7 0.000000560819
Chara braunii BFEA01000144 1 CH_cbr_131 2 3 0.000647303
Hydrangea macrophylla Hma1.2p1_0388F.1 1 CH_hma_271 2 3 0.000111086
Olea europaea chr11 1 CH_oeu_254 2 2 0.000160137
Sapria himalayana scaffold52_3862006 1 CH_shi_112 2 2 0.0000571804
Acer truncatum chr3 2 CH_acertr_430 2 2 0.000211491
Actinidia chinensis Lachesis_group13 2 CH_ach_199 2 2 0.000325928
Amaranthus hybridus AmaHy_arrow1_Scaffold_1 2 CH_amhyb_205 2 2 0.000252525
Brassica carinata ChrC01 2 CH_bca_198 3 4 0.0000000274167
Brassica oleracea C3 2 CH_bol_129 3 7 0.000000560819
Chara braunii BFEA01000144 2 CH_cbr_131 2 3 0.000647303
Hydrangea macrophylla Hma1.2p1_0388F.1 2 CH_hma_271 2 3 0.000111086
Olea europaea chr11 2 CH_oeu_254 2 2 0.000160137
Sapria himalayana scaffold52_3862006 2 CH_shi_112 2 2 0.0000571804

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001