Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g038070.1 Solanum lycopersicum HOM05D003938 ORTHO05D004759 8.8e-87 323.6 159 100.0
Solyc02g061800.2 Solanum lycopersicum HOM05D003938 ORTHO05D004759 3.1e-39 165.6 184 54.3
Sopen02g012840 Solanum pennellii HOM05D003938 ORTHO05D004759 4.0e-39 165.2 189 52.4
Solyc12g049430.1 Solanum lycopersicum HOM05D003938 ORTHO05D004759 7.5e-38 161.0 188 50.5
Peaxi162Scf00452g00848 Petunia axillaris HOM05D003938 ORTHO05D004759 1.9e-33 146.4 209 45.9
Migut.M01560 Erythranthe guttata HOM05D003938 ORTHO05D004759 2.5e-33 146.0 188 46.8
Cc05_g16030 Coffea canephora HOM05D003938 ORTHO05D004759 3.3e-33 145.6 188 45.7
THA.LOC104822756 Tarenaya hassleriana HOM05D003938 ORTHO05D004759 3.3e-33 145.6 188 46.3
Prupe.4G137900 Prunus persica HOM05D003938 ORTHO05D004759 5.6e-33 144.8 188 46.8
Lsat_1_v5_gn_7_71321 Lactuca sativa HOM05D003938 ORTHO05D004759 1.2e-32 143.7 188 45.7
Cpa.g.sc331.3 Carica papaya HOM05D003938 ORTHO05D004759 2.8e-32 142.5 188 46.3
GSVIVG01020281001 Vitis vinifera HOM05D003938 ORTHO05D004759 2.8e-32 142.5 185 46.5
Duzib168G1061 Durio zibethinus HOM05D003938 ORTHO05D004759 6.2e-32 141.4 188 44.7
Lalb_Chr01g0007211 Lupinus albus HOM05D003938 ORTHO05D004759 1.1e-31 140.6 188 45.2
MD05G1222400 Malus domestica HOM05D003938 ORTHO05D004759 1.1e-31 140.6 188 45.2
Sp1g38950 Schrenkiella parvula HOM05D003938 ORTHO05D004759 1.1e-31 140.6 188 46.3
Solyc07g066420.4 Solanum lycopersicum HOM05D003938 ORTHO05D004759 1.1e-31 140.6 188 45.7
Aa31LG10G170 Aethionema arabicum HOM05D003938 ORTHO05D004759 1.4e-31 140.2 188 45.7
MSTRG.16112 Avicennia marina HOM05D003938 ORTHO05D004759 1.4e-31 140.2 185 45.4
MD10G1204000 Malus domestica HOM05D003938 ORTHO05D004759 1.4e-31 140.2 188 44.1
CSS0000259 Camellia sinensis var. sinensis HOM05D003938 ORTHO05D004759 1.8e-31 139.8 188 46.3
CSS0019207 Camellia sinensis var. sinensis HOM05D003938 ORTHO05D004759 1.8e-31 139.8 188 46.3
Actinidia07348 Actinidia chinensis HOM05D003938 ORTHO05D004759 2.3e-31 139.4 188 45.7
Lj3g0013935 Lotus japonicus HOM05D003938 ORTHO05D004759 4.0e-31 138.7 188 44.7
EL10Ac2g03350 Beta vulgaris HOM05D003938 ORTHO05D004759 5.2e-31 138.3 188 43.1
Manes.06G173850 Manihot esculenta HOM05D003938 ORTHO05D004759 5.2e-31 138.3 188 44.1
DCAR_013743 Daucus carota HOM05D003938 ORTHO05D004759 6.8e-31 137.9 188 43.6
Gohir.A05G003300 Gossypium hirsutum HOM05D003938 ORTHO05D004759 1.2e-30 137.1 185 44.9
Gohir.D05G003701 Gossypium hirsutum HOM05D003938 ORTHO05D004759 1.2e-30 137.1 185 44.9
Gorai.009G003300 Gossypium raimondii HOM05D003938 ORTHO05D004759 1.2e-30 137.1 185 44.9
Potri.005G097500 Populus trichocarpa HOM05D003938 ORTHO05D004759 1.2e-30 137.1 188 43.6
Thhalv10011414m.g Eutrema salsugineum HOM05D003938 ORTHO05D004759 1.5e-30 136.7 188 45.2
Glyma.15G213200 Glycine max HOM05D003938 ORTHO05D004759 1.5e-30 136.7 185 45.4
Phvul.011G177175 Phaseolus vulgaris HOM05D003938 ORTHO05D004759 1.5e-30 136.7 188 43.1
Sed0018665 Sechium edule HOM05D003938 ORTHO05D004759 1.5e-30 136.7 188 45.7
Glyma.19G004200 Glycine max HOM05D003938 ORTHO05D004759 2.0e-30 136.3 188 43.6
AL1G62420 Arabidopsis lyrata HOM05D003938 ORTHO05D004759 2.6e-30 136.0 188 44.7
Lj8A187T28 Lonicera japonica HOM05D003938 ORTHO05D004759 2.6e-30 136.0 188 44.1
unitig_26.g10081 Utricularia gibba HOM05D003938 ORTHO05D004759 2.6e-30 136.0 188 43.1
CDE01G0219 Ceratophyllum demersum HOM05D003938 ORTHO05D004759 4.4e-30 135.2 188 44.1
Ciclev10004604m.g Citrus clementina HOM05D003938 ORTHO05D004759 4.4e-30 135.2 188 43.1
Thecc.09G180900 Theobroma cacao HOM05D003938 ORTHO05D004759 4.4e-30 135.2 188 43.6
Sabra05G0079800 Salix brachista HOM05D003938 ORTHO05D004759 7.6e-30 134.4 188 42.6
Sopen07g034590 Solanum pennellii HOM05D003938 ORTHO05D004759 7.6e-30 134.4 183 45.9
MELO3C012622.2 Cucumis melo HOM05D003938 ORTHO05D004759 1.3e-29 133.7 188 44.1
FvH4_3g15530 Fragaria vesca HOM05D003938 ORTHO05D004759 1.3e-29 133.7 188 44.7
FAN11G2591 Fragaria x ananassa HOM05D003938 ORTHO05D004759 1.3e-29 133.7 188 44.7
FAN21G1947 Fragaria x ananassa HOM05D003938 ORTHO05D004759 1.3e-29 133.7 188 44.7
arahy.Tifrunner.gnm1.ann1.TD7I6F Arachis hypogaea HOM05D003938 ORTHO05D004759 1.7e-29 133.3 183 44.3
CAN.G943.34 Capsicum annuum HOM05D003938 ORTHO05D004759 1.7e-29 133.3 181 44.8
ECA240G3729 Erigeron canadensis HOM05D003938 ORTHO05D004759 1.7e-29 133.3 183 44.8
Eucgr.F01467 Eucalyptus grandis HOM05D003938 ORTHO05D004759 1.7e-29 133.3 188 43.1
Medtr8g442420 Medicago truncatula HOM05D003938 ORTHO05D004759 1.7e-29 133.3 185 44.3
Carub.0001s4300 Capsella rubella HOM05D003938 ORTHO05D004759 2.2e-29 132.9 188 43.6
FAN25G2080 Fragaria x ananassa HOM05D003938 ORTHO05D004759 2.2e-29 132.9 188 45.7
Aqoxy3G04185_Aqoxy3G04186 Aquilegia oxysepala HOM05D003938 ORTHO05D004759 2.9e-29 132.5 185 44.3
AUR62040863 Chenopodium quinoa HOM05D003938 ORTHO05D004759 2.9e-29 132.5 188 42.6
CsaV3_7G022770 Cucumis sativus L. HOM05D003938 ORTHO05D004759 2.9e-29 132.5 188 44.1
Eucgr.F01469 Eucalyptus grandis HOM05D003938 ORTHO05D004759 2.9e-29 132.5 188 43.1
PSO675G9176 Papaver somniferum HOM05D003938 ORTHO05D004759 2.9e-29 132.5 188 44.1
RcHm_v2.0_Chr5g0026161 Rosa chinensis HOM05D003938 ORTHO05D004759 2.9e-29 132.5 188 44.1
arahy.Tifrunner.gnm1.ann1.KA488U Arachis hypogaea HOM05D003938 ORTHO05D004759 3.7e-29 132.1 183 43.7
ClCG09G022610 Citrullus lanatus HOM05D003938 ORTHO05D004759 3.7e-29 132.1 188 44.1
PSO717G0129 Papaver somniferum HOM05D003938 ORTHO05D004759 3.7e-29 132.1 185 44.3
AUR62037621 Chenopodium quinoa HOM05D003938 ORTHO05D004759 1.1e-28 130.6 185 41.6
AT1G53720 Arabidopsis thaliana HOM05D003938 ORTHO05D004759 2.4e-28 129.4 182 44.0
TWI74G0164 Tripterygium wilfordii HOM05D003938 ORTHO05D004759 2.4e-28 129.4 188 41.0
VMungo1127G1769 Vigna mungo HOM05D003938 ORTHO05D004759 3.2e-28 129.0 183 42.1
Atru.chr1.189 Acer truncatum HOM05D003938 ORTHO05D004759 5.4e-28 128.3 184 43.5
CARHR044020 Cardamine hirsuta HOM05D003938 ORTHO05D004759 5.4e-28 128.3 183 44.3
Nitab4.5_0001749g0120 Nicotiana tabacum HOM05D003938 ORTHO05D004759 5.4e-28 128.3 169 45.6
HanXRQChr05g0160881 Helianthus annuus HOM05D003938 ORTHO05D004759 7.1e-28 127.9 170 44.1
Carub.0008s0543 Capsella rubella HOM05D003938 ORTHO05D004759 1.2e-27 127.1 188 42.0
QL04p077115 Quercus lobata HOM05D003938 ORTHO05D004759 1.2e-27 127.1 188 43.1
PGR119G1566 Punica granatum HOM05D003938 ORTHO05D004759 2.1e-27 126.3 180 42.8
SMO351G0536 Selaginella moellendorffii HOM05D003938 ORTHO05D004759 2.1e-27 126.3 188 40.4
CSS0007376 Camellia sinensis var. sinensis HOM05D003938 ORTHO05D004759 2.7e-27 125.9 180 44.4
AagrBONN_evm.TU.Sc2ySwM_368.1871 Anthoceros agrestis HOM05D003938 ORTHO05D004759 6.0e-27 124.8 188 38.8
Os06g0670400 Oryza sativa ssp. japonica HOM05D003938 ORTHO05D004759 1.0e-26 124.0 185 41.6
Nn7g37935 Nelumbo nucifera HOM05D003938 ORTHO05D004759 2.3e-26 122.9 182 42.3
PGSC0003DMG400004370 Solanum tuberosum HOM05D003938 ORTHO05D004759 2.3e-26 122.9 78 78.2
BcaB04g16924 Brassica carinata HOM05D003938 ORTHO05D004759 3.0e-26 122.5 170 44.1
A08p00110 Brassica napus HOM05D000173 ORTHO05D008065 3.9e-26 122.1 144 47.9
BraA08t32068Z Brassica rapa HOM05D003938 ORTHO05D008065 6.6e-26 121.3 170 44.1
Os06g0670500 Oryza sativa ssp. japonica HOM05D003938 ORTHO05D004759 6.6e-26 121.3 185 41.1
BolC3t21636H Brassica oleracea HOM05D003938 ORTHO05D008065 8.6e-26 120.9 170 44.1
PGSC0003DMG400026878 Solanum tuberosum HOM05D003938 ORTHO05D004759 8.6e-26 120.9 78 76.9
C03p93390 Brassica napus HOM05D003938 ORTHO05D008065 1.1e-25 120.6 170 44.1
Medtr6g084140 Medicago truncatula HOM05D003938 ORTHO05D004759 1.9e-25 119.8 166 43.4
CSS0016392 Camellia sinensis var. sinensis HOM05D003938 ORTHO05D004759 2.5e-25 119.4 188 42.0
CSS0024659 Camellia sinensis var. sinensis HOM05D003938 ORTHO05D004759 2.5e-25 119.4 188 42.0
CANSAT80G1380 Cannabis sativa HOM05D003938 ORTHO05D004759 2.5e-25 119.4 169 43.2
CiPaw.01G119900 Carya illinoinensis HOM05D003938 ORTHO05D004759 2.5e-25 119.4 169 43.8
Psat4g174080 Pisum sativum HOM05D003938 ORTHO05D004759 4.3e-25 118.6 169 42.0
Zm00001eb274050 Zea mays HOM05D003938 ORTHO05D004759 5.6e-25 118.2 185 39.5
AL1G53090 Arabidopsis lyrata HOM05D000070 ORTHO05D004759 7.3e-25 117.9 184 40.2
Mapoly0010s0175 Marchantia polymorpha HOM05D003938 ORTHO05D004759 9.6e-25 117.5 185 41.1
Sopen12g031080 Solanum pennellii HOM05D003938 ORTHO05D004759 1.2e-24 117.1 79 74.7
TPR.G22448 Trifolium pratense HOM05D003938 ORTHO05D004759 1.6e-24 116.7 169 42.0
PGSC0003DMG400021758 Solanum tuberosum HOM05D003938 ORTHO05D004759 3.6e-24 115.5 78 74.4
SGA_v2.0_scaffold7G03579 Striga asiatica HOM05D003938 ORTHO05D004759 3.6e-24 115.5 198 37.9
HPP92_008853 Vanilla planifolia HOM05D003938 ORTHO05D004759 3.6e-24 115.5 190 40.0
HPP92_008859 Vanilla planifolia HOM05D003938 ORTHO05D004759 3.6e-24 115.5 190 40.0
TAR626G0088 Trochodendron aralioides HOM05D003938 ORTHO05D004759 6.8e-23 111.3 233 35.6
THA.LOC104822789 Tarenaya hassleriana HOM05D003938 ORTHO05D004759 1.7e-21 106.7 78 67.9
EL10Ac6g14412 Beta vulgaris HOM05D003938 ORTHO05D004759 2.9e-21 105.9 170 37.6
Oeu003830.4 Olea europaea HOM05D003938 ORTHO05D004759 3.8e-21 105.5 156 41.7
Haze_07842 Corylus avellana HOM05D003938 ORTHO05D004759 1.4e-20 103.6 199 35.2
vmacro11660 Vaccinium macrocarpon HOM05D003938 ORTHO05D004759 1.9e-20 103.2 78 64.1
MCO01G120 Micromonas commoda HOM05D003938 ORTHO05D004759 3.2e-20 102.4 166 37.3
ATR0763G204 Amborella trichopoda HOM05D003938 ORTHO05D004759 5.4e-20 101.7 78 64.1
MBI01_g43617_MAGBIO Magnolia biondii HOM05D003938 ORTHO05D004759 7.1e-20 101.3 78 64.1
Pp3c1_5600 Physcomitrium patens HOM05D003938 ORTHO05D004759 9.3e-20 100.9 173 41.0
Dinv19621 Davidia involucrata HOM05D003938 ORTHO05D004759 2.1e-19 99.8 78 62.8
Ciclev10007155m.g Citrus clementina HOM05D003938 ORTHO05D004759 3.5e-19 99.0 175 38.3
FAN16G1651 Fragaria x ananassa HOM05D003938 ORTHO05D004759 3.5e-19 99.0 78 64.1
Cre11.g479850 Chlamydomonas reinhardtii HOM05D003938 ORTHO05D004759 4.6e-19 98.6 184 34.2
SHI21595 Sapria himalayana HOM05D000002 ORTHO05D004759 6.0e-19 98.2 78 62.8
Ca_12645_v3 Cicer arietinum L. HOM05D003938 ORTHO05D004759 7.8e-19 97.8 221 32.6
Lj2g0001970 Lotus japonicus HOM05D003938 ORTHO05D004759 3.0e-18 95.9 75 61.3
SEGI_08656 Sequoiadendron giganteum HOM05D003938 ORTHO05D004759 3.9e-18 95.5 78 62.8
Nitab4.5_0009317g0010 Nicotiana tabacum HOM05D003938 ORTHO05D004759 4.3e-17 92.0 69 68.1
AUR62027709 Chenopodium quinoa HOM05D003938 ORTHO05D004759 5.6e-17 91.7 124 43.5
AUR62041826 Chenopodium quinoa HOM05D003938 ORTHO05D004759 7.3e-17 91.3 124 43.5
Sc09g0007280 Simmondsia chinensis HOM05D003938 ORTHO05D004759 9.6e-17 90.9 78 60.3
Haze_10874 Corylus avellana HOM05D003938 ORTHO05D004759 1.1e-15 87.4 231 30.3
Solyc12g038010.1 Solanum lycopersicum HOM05D003938 ORTHO05D004759 2.6e-14 82.8 55 72.7
Haze_26935 Corylus avellana HOM05D003938 ORTHO05D004759 4.4e-14 82.0 185 31.4
TPR.G24716 Trifolium pratense HOM05D003938 ORTHO05D004759 1.7e-13 80.1 59 62.7
AT1G53780 Arabidopsis thaliana HOM05D000070 ORTHO05D003301 2.2e-13 79.7 78 53.8
AagrBONN_evm.TU.Sc2ySwM_344.2630 Anthoceros agrestis HOM05D003938 ORTHO05D004759 1.2e-11 73.9 153 32.7
Solyc12g038030.1 Solanum lycopersicum HOM05D003938 ORTHO05D004759 2.1e-11 73.2 104 45.2
PGSC0003DMG400004369 Solanum tuberosum HOM05D003938 ORTHO05D004759 6.6e-10 68.2 66 59.1
CARHR248660 Cardamine hirsuta HOM05D003938 ORTHO05D004759 8.7e-10 67.8 144 33.3
Sopen12g023920 Solanum pennellii HOM05D003938 ORTHO05D004759 1.5e-09 67.0 74 50.0
TPR.G9407 Trifolium pratense HOM05D003938 ORTHO05D004759 2.4e-07 59.7 148 31.1
SMO353G0235 Selaginella moellendorffii HOM05D003938 ORTHO05D004759 3.1e-07 59.3 161 29.8
QL04p077101 Quercus lobata HOM05D003938 ORTHO05D004759 4.0e-07 58.9 37 73.0
AL1G64340 Arabidopsis lyrata HOM05D003938 ORTHO05D004759 2.6e-06 56.2 71 45.1
SHI21593 Sapria himalayana HOM05D003938 ORTHO05D045682 4.5e-06 55.5 49 51.0
CBR_g2920 Chara braunii HOM05D003938 ORTHO05D004759 5.8e-06 55.1 37 56.8
Solyc12g038110.1 Solanum lycopersicum HOM05D003938 ORTHO05D004759 7.6e-06 54.7 37 70.3
FvH4_3g21900 Fragaria vesca HOM05D003938 ORTHO05D004759 9.9e-06 54.3 37 67.6


User provided reference genes

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