Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g083003.1 Solanum lycopersicum HOM05D004358 ORTHO05D004960 1.1e-116 423.3 206 100.0
Sopen09g031880 Solanum pennellii HOM05D004358 ORTHO05D004960 3.0e-103 378.6 187 96.8
PGSC0003DMG401006099 Solanum tuberosum HOM05D004358 ORTHO05D004960 7.3e-102 374.0 188 95.7
Nitab4.5_0001787g0060 Nicotiana tabacum HOM05D004358 ORTHO05D004960 1.1e-97 360.1 193 88.1
CAN.G749.19 Capsicum annuum HOM05D004358 ORTHO05D004960 1.3e-93 346.7 188 88.3
Nitab4.5_0000941g0030 Nicotiana tabacum HOM05D004358 ORTHO05D004960 1.8e-92 342.8 193 85.0
Peaxi162Scf00058g01717 Petunia axillaris HOM05D004358 ORTHO05D004960 5.8e-91 337.8 194 82.0
CAN.G65.181 Capsicum annuum HOM05D004358 ORTHO05D004960 2.5e-78 295.8 178 77.0
Nitab4.5_0005570g0020 Nicotiana tabacum HOM05D004358 ORTHO05D004960 3.3e-78 295.4 178 75.8
CANSAT78G2120 Cannabis sativa HOM05D004358 ORTHO05D004960 1.3e-77 293.5 181 75.1
Sopen06g029780 Solanum pennellii HOM05D004358 ORTHO05D004960 1.3e-77 293.5 178 76.4
MD04G1007400 Malus domestica HOM05D004358 ORTHO05D004960 2.1e-77 292.7 187 73.3
Solyc06g073400.3 Solanum lycopersicum HOM05D004358 ORTHO05D004960 2.1e-77 292.7 178 76.4
QL10p048514 Quercus lobata HOM05D004358 ORTHO05D004960 2.8e-77 292.4 188 71.3
COL.COLO4_02723 Corchorus olitorius HOM05D004358 ORTHO05D004960 1.1e-76 290.4 187 71.7
Carub.0001s0527 Capsella rubella HOM05D004358 ORTHO05D004960 1.4e-76 290.0 184 72.3
Manes.04G041200 Manihot esculenta HOM05D004358 ORTHO05D004960 1.4e-76 290.0 178 73.6
Dinv22724 Davidia involucrata HOM05D004358 ORTHO05D004960 1.8e-76 289.7 187 70.6
Duzib151G0384 Durio zibethinus HOM05D004358 ORTHO05D004960 1.8e-76 289.7 187 72.2
Peaxi162Scf00375g00513 Petunia axillaris HOM05D004358 ORTHO05D004960 1.8e-76 289.7 181 72.9
Medtr2g098660 Medicago truncatula HOM05D004358 ORTHO05D004960 9.0e-76 287.3 177 73.4
CiPaw.02G055200 Carya illinoinensis HOM05D004358 ORTHO05D004960 2.0e-75 286.2 187 69.5
Cc00_g17220 Coffea canephora HOM05D004358 ORTHO05D004960 2.0e-75 286.2 181 73.5
Glyma.13G343700 Glycine max HOM05D004358 ORTHO05D004960 2.0e-75 286.2 178 73.6
SGA_v2.0_scaffold181G39728 Striga asiatica HOM05D004358 ORTHO05D004960 2.6e-75 285.8 192 69.3
RcHm_v2.0_Chr4g0407021 Rosa chinensis HOM05D004358 ORTHO05D004960 3.4e-75 285.4 187 70.6
Haze_01520 Corylus avellana HOM05D004358 ORTHO05D004960 4.5e-75 285.0 178 73.6
Cfa015153 Carpinus fangiana HOM05D004358 ORTHO05D004960 5.9e-75 284.6 187 70.1
Ciclev10020813m.g Citrus clementina HOM05D004358 ORTHO05D004960 5.9e-75 284.6 183 70.5
GSVIVG01010748001 Vitis vinifera HOM05D004358 ORTHO05D004960 5.9e-75 284.6 190 70.5
Gorai.011G146700 Gossypium raimondii HOM05D004358 ORTHO05D004960 7.6e-75 284.3 182 73.6
arahy.Tifrunner.gnm1.ann1.CJKM5C Arachis hypogaea HOM05D004358 ORTHO05D004960 1.3e-74 283.5 181 70.7
AL1G15860 Arabidopsis lyrata HOM05D004358 ORTHO05D004960 1.7e-74 283.1 181 71.8
Thhalv10016815m.g Eutrema salsugineum HOM05D004358 ORTHO05D004960 1.7e-74 283.1 187 67.4
Potri.007G127600 Populus trichocarpa HOM05D004358 ORTHO05D004960 1.7e-74 283.1 187 70.1
Prupe.1G191600 Prunus persica HOM05D004358 ORTHO05D004960 1.7e-74 283.1 187 70.1
VMungo1127G0908 Vigna mungo HOM05D004358 ORTHO05D004960 2.2e-74 282.7 183 68.9
CARHR005460 Cardamine hirsuta HOM05D004358 ORTHO05D004960 2.9e-74 282.3 184 70.1
BcaC01g05950 Brassica carinata HOM05D004358 ORTHO05D004960 5.0e-74 281.6 187 67.9
C03p20720 Brassica napus HOM05D004358 ORTHO05D004960 5.0e-74 281.6 187 67.9
BolC3t14451H Brassica oleracea HOM05D004358 ORTHO05D004960 5.0e-74 281.6 187 67.9
Lalb_Chr01g0003211 Lupinus albus HOM05D004358 ORTHO05D004960 5.0e-74 281.6 187 70.1
Actinidia39855 Actinidia chinensis HOM05D004358 ORTHO05D004960 6.5e-74 281.2 178 72.5
FAN12G1706 Fragaria x ananassa HOM05D004358 ORTHO05D004960 6.5e-74 281.2 187 70.1
FAN07G2248 Fragaria x ananassa HOM05D004358 ORTHO05D004960 8.5e-74 280.8 187 70.1
AUR62015399 Chenopodium quinoa HOM05D004358 ORTHO05D004960 1.1e-73 280.4 187 70.1
Phvul.005G152500 Phaseolus vulgaris HOM05D004358 ORTHO05D004960 1.1e-73 280.4 184 69.6
Sp4g13930 Schrenkiella parvula HOM05D004358 ORTHO05D004960 1.1e-73 280.4 187 67.4
AT2G31450 Arabidopsis thaliana HOM05D004358 ORTHO05D004960 1.4e-73 280.0 185 67.6
Thhalv10007955m.g Eutrema salsugineum HOM05D004358 ORTHO05D004960 1.4e-73 280.0 188 69.1
FAN12G4165 Fragaria x ananassa HOM05D004358 ORTHO05D004960 1.4e-73 280.0 187 69.5
Glyma.11G128600 Glycine max HOM05D004358 ORTHO05D004960 1.4e-73 280.0 182 71.4
CSS0013619 Camellia sinensis var. sinensis HOM05D004358 ORTHO05D004960 1.9e-73 279.6 177 71.2
ClCG07G015600 Citrullus lanatus HOM05D004358 ORTHO05D004960 1.9e-73 279.6 181 70.7
TPR.G34203 Trifolium pratense HOM05D004358 ORTHO05D004960 1.9e-73 279.6 184 70.7
unitig_8.g4603 Utricularia gibba HOM05D004358 ORTHO05D004960 1.9e-73 279.6 181 69.1
BcaB01g04044 Brassica carinata HOM05D004358 ORTHO05D004960 2.5e-73 279.3 187 66.8
Lj3g0017360 Lotus japonicus HOM05D004358 ORTHO05D004960 2.5e-73 279.3 176 72.2
CARHR125100 Cardamine hirsuta HOM05D004358 ORTHO05D004960 3.2e-73 278.9 185 68.1
AUR62002292 Chenopodium quinoa HOM05D004358 ORTHO05D004960 3.2e-73 278.9 178 71.9
Nn1g09578 Nelumbo nucifera HOM05D004358 ORTHO05D004960 3.2e-73 278.9 178 72.5
MSTRG.6615 Avicennia marina HOM05D004358 ORTHO05D004960 4.2e-73 278.5 187 68.4
Phvul.011G055100 Phaseolus vulgaris HOM05D004358 ORTHO05D004960 4.2e-73 278.5 182 68.7
FvH4_4g10690 Fragaria vesca HOM05D004358 ORTHO05D004960 5.5e-73 278.1 187 69.0
Lj3g0009399 Lotus japonicus HOM05D004358 ORTHO05D004960 5.5e-73 278.1 183 69.4
AL4G26720 Arabidopsis lyrata HOM05D004358 ORTHO05D004960 7.2e-73 277.7 185 67.0
Ciclev10020816m.g Citrus clementina HOM05D004358 ORTHO05D004960 7.2e-73 277.7 186 68.3
Psat7g213960 Pisum sativum HOM05D004358 ORTHO05D004960 7.2e-73 277.7 184 70.1
AT1G05900 Arabidopsis thaliana HOM05D004358 ORTHO05D004960 9.3e-73 277.3 181 70.2
Carub.0004s1278 Capsella rubella HOM05D004358 ORTHO05D004960 9.3e-73 277.3 178 69.1
DCAR_028143 Daucus carota HOM05D004358 ORTHO05D004960 1.2e-72 276.9 191 67.5
MELO3C017721.2 Cucumis melo HOM05D004358 ORTHO05D004960 1.6e-72 276.6 191 67.0
arahy.Tifrunner.gnm1.ann1.VZ0ARL Arachis hypogaea HOM05D004358 ORTHO05D004960 2.7e-72 275.8 190 67.9
BcaC07g42102 Brassica carinata HOM05D004358 ORTHO05D004960 2.7e-72 275.8 187 68.4
C08p51540 Brassica napus HOM05D004358 ORTHO05D004960 2.7e-72 275.8 187 68.4
BolC8t52682H Brassica oleracea HOM05D004358 ORTHO05D004960 2.7e-72 275.8 187 68.4
Ca_01263_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 2.7e-72 275.8 177 70.1
SalBow7G0323 Salvia bowleyana HOM05D004358 ORTHO05D004960 2.7e-72 275.8 180 68.9
TWI59G0142 Tripterygium wilfordii HOM05D004358 ORTHO05D004960 3.6e-72 275.4 178 70.2
TAR362G1164 Trochodendron aralioides HOM05D004358 ORTHO05D004960 3.6e-72 275.4 178 70.2
ATR0686G198 Amborella trichopoda HOM05D004358 ORTHO05D004960 4.6e-72 275.0 178 69.7
A03p17630 Brassica napus HOM05D004358 ORTHO05D004960 6.1e-72 274.6 188 66.5
BraA03t11028Z Brassica rapa HOM05D004358 ORTHO05D004960 6.1e-72 274.6 188 66.5
PSO732G0278 Papaver somniferum HOM05D004358 ORTHO05D004960 6.1e-72 274.6 183 69.9
TAR636G1513 Trochodendron aralioides HOM05D004358 ORTHO05D004960 7.9e-72 274.2 185 67.6
Ca_20780_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 1.0e-71 273.9 184 70.1
Sed0019525 Sechium edule HOM05D004358 ORTHO05D004960 1.0e-71 273.9 184 67.9
Atru.chr3.1531 Acer truncatum HOM05D004358 ORTHO05D004960 1.3e-71 273.5 178 69.7
Aa31LG5G5430 Aethionema arabicum HOM05D004358 ORTHO05D004960 1.3e-71 273.5 178 69.7
EL10Ac3g05922 Beta vulgaris HOM05D004358 ORTHO05D004960 1.8e-71 273.1 192 67.7
A09p67250 Brassica napus HOM05D004358 ORTHO05D004960 1.8e-71 273.1 182 68.1
BraA09t42058Z Brassica rapa HOM05D004358 ORTHO05D005739 1.8e-71 273.1 182 68.1
CsaV3_4G003300 Cucumis sativus L. HOM05D004358 ORTHO05D004960 1.8e-71 273.1 184 68.5
Rhsim02G0076600 Rhododendron simsii HOM05D004358 ORTHO05D004960 1.8e-71 273.1 211 62.1
Sabra07G0103600 Salix brachista HOM05D004358 ORTHO05D004960 1.8e-71 273.1 186 67.2
THA.LOC104827388 Tarenaya hassleriana HOM05D004358 ORTHO05D004960 2.3e-71 272.7 188 66.0
PSO675G5046 Papaver somniferum HOM05D004358 ORTHO05D004960 5.1e-71 271.6 183 69.4
arahy.Tifrunner.gnm1.ann1.98UW30 Arachis hypogaea HOM05D004358 ORTHO05D004960 8.7e-71 270.8 180 69.4
Sc13g0005360 Simmondsia chinensis HOM05D004358 ORTHO05D004960 1.9e-70 269.6 185 65.9
Ah.13g072910 Amaranthus hybridus HOM05D004358 ORTHO05D004960 2.5e-70 269.2 178 68.5
Eucgr.H00376 Eucalyptus grandis HOM05D004358 ORTHO05D004960 3.3e-70 268.9 178 70.2
Medtr4g067060 Medicago truncatula HOM05D004358 ORTHO05D004960 3.3e-70 268.9 184 67.9
PSO732G0822 Papaver somniferum HOM05D004358 ORTHO05D004960 7.4e-70 267.7 183 67.8
ECA236G3148 Erigeron canadensis HOM05D004358 ORTHO05D004960 2.2e-69 266.2 178 68.0
PGR142G0453 Punica granatum HOM05D004358 ORTHO05D004960 4.8e-69 265.0 185 67.0
Atru.chr3.1534 Acer truncatum HOM05D004358 ORTHO05D004960 2.4e-68 262.7 185 65.9
Hund03152 Selenicereus undatus HOM05D004358 ORTHO05D004960 2.4e-68 262.7 187 65.2
Hund03151 Selenicereus undatus HOM05D004358 ORTHO05D004960 5.3e-68 261.5 178 66.3
vmacro15647 Vaccinium macrocarpon HOM05D004358 ORTHO05D004960 5.3e-68 261.5 227 57.3
Aqoxy7G00191 Aquilegia oxysepala HOM05D004358 ORTHO05D004960 2.1e-64 249.6 186 62.9
Zm00001eb406830 Zea mays HOM05D004358 ORTHO05D004960 2.1e-64 249.6 196 60.2
Gohir.D10G133000 Gossypium hirsutum HOM05D004358 ORTHO05D004960 2.6e-62 242.7 179 65.9
HanXRQChr06g0172341 Helianthus annuus HOM05D004358 ORTHO05D004960 2.6e-62 242.7 185 61.6
Lsat_1_v5_gn_8_80540 Lactuca sativa HOM05D004358 ORTHO05D004960 4.4e-62 241.9 187 57.8
Aqoxy7G00192 Aquilegia oxysepala HOM05D004358 ORTHO05D004960 2.4e-60 236.1 187 62.0
Mapoly0058s0068 Marchantia polymorpha HOM05D004358 ORTHO05D004960 2.4e-60 236.1 185 61.1
SMO347G0587 Selaginella moellendorffii HOM05D004358 ORTHO05D004960 4.1e-60 235.3 176 61.4
SHI24906 Sapria himalayana HOM05D004358 ORTHO05D004960 1.0e-58 230.7 179 58.7
Thecc.04G185400 Theobroma cacao HOM05D004358 ORTHO05D004960 3.8e-58 228.8 178 61.8
arahy.Tifrunner.gnm1.ann1.Z962T9 Arachis hypogaea HOM05D004358 ORTHO05D004960 9.4e-57 224.2 139 72.7
Mapoly0058s0067 Marchantia polymorpha HOM05D004358 ORTHO05D004960 1.6e-56 223.4 179 60.9
ECA236G1172 Erigeron canadensis HOM05D004358 ORTHO05D004960 6.1e-56 221.5 145 69.0
CBR_g29622 Chara braunii HOM05D004358 ORTHO05D004960 3.9e-55 218.8 170 57.6
Psat1g007160 Pisum sativum HOM05D004358 ORTHO05D004960 5.2e-55 218.4 140 71.4
SalBow7G1435 Salvia bowleyana HOM05D004358 ORTHO05D004960 2.6e-54 216.1 131 71.0
CAN.G80.26 Capsicum annuum HOM05D004358 ORTHO05D004960 9.7e-54 214.2 161 68.3
Nitab4.5_0003132g0140 Nicotiana tabacum HOM05D004358 ORTHO05D004960 6.3e-53 211.5 178 59.6
PGSC0003DMG401026906 Solanum tuberosum HOM05D004358 ORTHO05D004960 3.7e-45 185.7 106 79.2
Sp1g04740 Schrenkiella parvula HOM05D004358 ORTHO05D004960 4.1e-44 182.2 172 52.3
Ca_18838_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 1.6e-43 180.3 114 71.1
Migut.M00111 Erythranthe guttata HOM05D004358 ORTHO05D004960 1.7e-42 176.8 111 72.1
Haze_27447 Corylus avellana HOM05D004358 ORTHO05D004960 3.8e-42 175.6 168 49.4
Glyma.12G053100 Glycine max HOM05D004358 ORTHO05D004960 1.8e-36 156.8 112 67.0
Cfa026201 Carpinus fangiana HOM05D004358 ORTHO05D004960 2.3e-34 149.8 166 44.0
AagrBONN_evm.TU.Sc2ySwM_368.679 Anthoceros agrestis HOM05D004358 ORTHO05D004960 2.9e-34 149.4 193 43.5
Pp3c17_17810 Physcomitrium patens HOM05D004358 ORTHO05D004960 2.1e-32 143.3 169 41.4
DCAR_028139 Daucus carota HOM05D004358 ORTHO05D004960 3.1e-28 129.4 75 72.0
Mapoly0058s0064 Marchantia polymorpha HOM05D004358 ORTHO05D004960 9.2e-28 127.9 105 56.2
Gohir.A10G133700 Gossypium hirsutum HOM05D004358 ORTHO05D004960 7.3e-25 118.2 77 70.1
BcaC07g42101 Brassica carinata HOM05D004358 ORTHO05D004960 8.9e-23 111.3 76 67.1
Cpa.g.sc41.25 Carica papaya HOM05D004358 ORTHO05D004960 2.0e-19 100.1 68 66.2
Cpa.g.sc41.31 Carica papaya HOM05D004358 ORTHO05D004960 7.8e-19 98.2 73 60.3
PGSC0003DMG402006099 Solanum tuberosum HOM05D004358 ORTHO05D004960 1.7e-18 97.1 65 75.4
Rhsim02G0076400 Rhododendron simsii HOM05D004358 ORTHO05D004960 3.1e-15 86.3 94 46.8
Cre17.g732050 Chlamydomonas reinhardtii HOM05D004358 ORTHO05D004960 1.3e-13 80.9 172 29.1
Ca_29315_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 7.0e-12 75.1 140 31.4
PRCOL_00001550 Prasinoderma coloniale HOM05D004358 ORTHO05D004960 4.6e-11 72.4 161 29.2
Cre02.g082000 Chlamydomonas reinhardtii HOM05D006570 ORTHO05D008193 2.5e-09 66.6 148 30.4
Lj3C203G5 Lonicera japonica HOM05D009066 ORTHO05D004960 9.5e-09 64.7 37 73.0
Pp3c18_200 Physcomitrium patens HOM05D006570 ORTHO05D008193 2.8e-08 63.2 152 28.9
arahy.Tifrunner.gnm1.ann1.N5JW36 Arachis hypogaea HOM05D006570 ORTHO05D008193 8.1e-08 61.6 151 31.8
CsaV3_6G007600 Cucumis sativus L. HOM05D006570 ORTHO05D008193 8.1e-08 61.6 154 28.6
arahy.Tifrunner.gnm1.ann1.L2UBUE Arachis hypogaea HOM05D006570 ORTHO05D008193 2.3e-07 60.1 136 30.1
Phvul.010G109900 Phaseolus vulgaris HOM05D006570 ORTHO05D008193 3.1e-07 59.7 136 30.9
Ca_23570_v3 Cicer arietinum L. HOM05D006570 ORTHO05D008193 4.0e-07 59.3 151 30.5
Ca_23579_v3 Cicer arietinum L. HOM05D006570 ORTHO05D008193 4.0e-07 59.3 151 30.5
MCO12G048 Micromonas commoda HOM05D006570 ORTHO05D008193 4.0e-07 59.3 170 28.8
Sc05g0001500 Simmondsia chinensis HOM05D006570 ORTHO05D008193 4.0e-07 59.3 159 28.9
Manes.13G058200 Manihot esculenta HOM05D006570 ORTHO05D008193 6.8e-07 58.5 136 30.1
Medtr8g028105 Medicago truncatula HOM05D006570 ORTHO05D008193 6.8e-07 58.5 151 29.8
Psat4g158840 Pisum sativum HOM05D006570 ORTHO05D008193 6.8e-07 58.5 136 30.1
TPR.G5123 Trifolium pratense HOM05D006570 ORTHO05D008193 6.8e-07 58.5 136 29.4
VMungo0331G0798 Vigna mungo HOM05D006570 ORTHO05D008193 6.8e-07 58.5 136 30.9
Lalb_Chr10g0100201 Lupinus albus HOM05D006570 ORTHO05D008193 1.5e-06 57.4 132 33.3
CiPaw.07G077200 Carya illinoinensis HOM05D006570 ORTHO05D008193 2.0e-06 57.0 136 30.9
Glyma.07G059700 Glycine max HOM05D006570 ORTHO05D008193 2.0e-06 57.0 136 29.4
PSO170G2695 Papaver somniferum HOM05D006570 ORTHO05D008193 2.0e-06 57.0 158 27.8
Atru.chr6.3468 Acer truncatum HOM05D006570 ORTHO05D008193 2.6e-06 56.6 136 30.1
ClCG06G001630 Citrullus lanatus HOM05D006570 ORTHO05D008193 3.4e-06 56.2 148 27.0
TAR362G0032 Trochodendron aralioides HOM05D006570 ORTHO05D008193 3.4e-06 56.2 152 28.3
Hma1.2p1_0834F.1_g225720 Hydrangea macrophylla HOM05D006570 ORTHO05D008193 5.8e-06 55.5 152 28.3
PGR083G1749 Punica granatum HOM05D006570 ORTHO05D008193 5.8e-06 55.5 136 30.1
Thecc.01G203700 Theobroma cacao HOM05D006570 ORTHO05D008193 5.8e-06 55.5 151 29.1
Lj3g0023743 Lotus japonicus HOM05D006570 ORTHO05D008193 7.5e-06 55.1 136 28.7


User provided reference genes

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