Gene: PGSC0003DMG401006099

General Information

Structural Information

  • Species Solanum tuberosum
  • Gene Identifier PGSC0003DMG401006099
  • Transcript Identifier PGSC0003DMT400015627
  • Gene Type Coding gene
  • Location ST4.03ch09 : 55057614-55061784 : negative

Gene Family Information

  • ID HOM05D004358
  • #Genes/#Species 164/94
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • pacid 37458402
  • id PGSC0003DMG401006099.v4.03
  • uniprot M1A6B0

Descriptions

  • Description Endonuclease III
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008152
IEA
GOA Databasemetabolic process
GO:0006285
IBA
IEA
GOA Databasebase-excision repair, AP site formation
GO:0006296
IBA
GOA Databasenucleotide-excision repair, DNA incision, 5'-to lesion
GO:0006284
IEA
GOA Databasebase-excision repair
GO:0006284
IEA
InterProbase-excision repair
GO:0006974
IEA
GOA Databasecellular response to DNA damage stimulus
GO:0006281
IEA
GOA DatabaseDNA repair
GO:0006281
IEA
InterProDNA repair

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003906
IBA
IEA
GOA DatabaseDNA-(apurinic or apyrimidinic site) endonuclease activity
GO:0000703
IBA
IEA
GOA Databaseoxidized pyrimidine nucleobase lesion DNA N-glycosylase activity
GO:0019104
IEA
GOA DatabaseDNA N-glycosylase activity
GO:0003824
IEA
GOA Databasecatalytic activity
GO:0003824
IEA
InterProcatalytic activity
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0016798
IEA
GOA Databasehydrolase activity, acting on glycosyl bonds
GO:0016829
IEA
GOA Databaselyase activity
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0051539
IEA
GOA Database4 iron, 4 sulfur cluster binding
GO:0051539
IEA
InterPro4 iron, 4 sulfur cluster binding
GO:0051536
IEA
GOA Databaseiron-sulfur cluster binding
GO:0140078
IEA
GOA Databaseclass I DNA-(apurinic or apyrimidinic site) endonuclease activity
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0042644
IBA
GOA Databasechloroplast nucleoid
GO:0005634
IBA
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif
IPR003265 HhH-GPD domain
IPR011257 DNA glycosylase
IPR023170 Helix-hairpin-helix, base-excision DNA repair, C-terminal
IPR000445 Helix-hairpin-helix motif
Mapman id Description
14.5.11 DNA damage response.base excision repair (BER).bifunctional glycosylase-lyase and endonuclease (NTH)