Gene: Sopen06g029780

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen06g029780
  • Transcript Identifier Sopen06g029780.1
  • Gene Type Coding gene
  • Location Spenn-ch06 : 55979835-55986592 : negative

Gene Family Information

  • ID HOM05D004358
  • #Genes/#Species 164/94
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen06g029780.1

Descriptions

  • Description ATNTH1 | CONTAINS InterPro DOMAIN/s: Helix-hairpin-helix motif , Helix-hairpin-helix DNA-binding motif, class 1 , Endonuclease III, iron-sulphur binding site , DNA glycosylase , Endonuclease III-like, iron-sulphur cluster loop motif , Endonuclease III, conserved site-2 , HhH-GPD domain | BEST Arabidopsis thaliana protein match is: endonuclease III 2
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006281
IEA
InterProDNA repair
GO:0006284
IEA
InterProbase-excision repair

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
InterProDNA binding
GO:0003824
IEA
InterProcatalytic activity
GO:0051539
IEA
InterPro4 iron, 4 sulfur cluster binding
GO:0003906
ISO
PLAZA Integrative OrthologyDNA-(apurinic or apyrimidinic site) endonuclease activity AT2G31450
GO:0019104
ISO
PLAZA Integrative OrthologyDNA N-glycosylase activity AT2G31450

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0042644
ISO
PLAZA Integrative Orthologychloroplast nucleoid AT2G31450

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000445 Helix-hairpin-helix motif
IPR011257 DNA glycosylase
IPR003265 HhH-GPD domain
IPR023170 Helix-hairpin-helix, base-excision DNA repair, C-terminal
IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif
Mapman id Description
14.5.11 DNA damage response.base excision repair (BER).bifunctional glycosylase-lyase and endonuclease (NTH)