Gene: Solyc06g073400.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc06g073400.3
  • Transcript Identifier Solyc06g073400.3.1
  • Gene Type Coding gene
  • Location SL4.0ch06 : 42897654-42904386 : negative

Gene Family Information

  • ID HOM05D004358
  • #Genes/#Species 164/94
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc06g073400.3.1
  • uniprot A0A3Q7HVJ5
  • gene_id Solyc06g073400

Descriptions

  • Description Endonuclease III homolog (AHRD V3.3 *** A0A2G3CAJ1_CAPCH)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008152
IEA
GOA Databasemetabolic process
GO:0006296
IBA
GOA Databasenucleotide-excision repair, DNA incision, 5'-to lesion
GO:0006285
IBA
IEA
GOA Databasebase-excision repair, AP site formation
GO:0006284
IEA
GOA Databasebase-excision repair
GO:0006284
IEA
InterProbase-excision repair
GO:0006974
IEA
GOA Databasecellular response to DNA damage stimulus
GO:0006281
IEA
GOA DatabaseDNA repair
GO:0006281
IEA
InterProDNA repair

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000703
IBA
IEA
GOA Databaseoxidized pyrimidine nucleobase lesion DNA N-glycosylase activity
GO:0003906
IBA
IEA
GOA DatabaseDNA-(apurinic or apyrimidinic site) endonuclease activity
GO:0019104
IEA
GOA DatabaseDNA N-glycosylase activity
GO:0003824
IEA
GOA Databasecatalytic activity
GO:0003824
IEA
InterProcatalytic activity
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0016798
IEA
GOA Databasehydrolase activity, acting on glycosyl bonds
GO:0016829
IEA
GOA Databaselyase activity
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0051536
IEA
GOA Databaseiron-sulfur cluster binding
GO:0140078
IEA
GOA Databaseclass I DNA-(apurinic or apyrimidinic site) endonuclease activity
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding
GO:0051539
IEA
GOA Database4 iron, 4 sulfur cluster binding
GO:0051539
IEA
InterPro4 iron, 4 sulfur cluster binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IBA
IEA
GOA Databasenucleus
GO:0042644
IBA
GOA Databasechloroplast nucleoid

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR011257 DNA glycosylase
IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif
IPR003265 HhH-GPD domain
IPR023170 Helix-hairpin-helix, base-excision DNA repair, C-terminal
IPR000445 Helix-hairpin-helix motif
Mapman id Description
14.5.11 DNA damage response.base excision repair (BER).bifunctional glycosylase-lyase and endonuclease (NTH)