Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold58G20604 Striga asiatica HOM05D006129 ORTHO05D007446 0.0e+00 1604.3 807 100.0
MSTRG.20134 Avicennia marina HOM05D006129 ORTHO05D007446 3.2e-294 1015.0 799 65.7
Migut.B00306 Erythranthe guttata HOM05D006129 ORTHO05D007446 2.9e-287 991.9 791 65.5
unitig_744.g24241 Utricularia gibba HOM05D006129 ORTHO05D007446 1.1e-254 883.6 764 58.5
Dinv42121 Davidia involucrata HOM05D006129 ORTHO05D007446 1.4e-249 866.7 794 56.4
Oeu057674.1 Olea europaea HOM05D006129 ORTHO05D007446 1.6e-248 863.2 799 56.4
QL11p038411 Quercus lobata HOM05D006129 ORTHO05D007446 5.6e-246 854.7 771 56.2
Duzib248G0151 Durio zibethinus HOM05D006129 ORTHO05D007446 5.2e-244 848.2 746 55.9
GSVIVG01031785001 Vitis vinifera HOM05D006129 ORTHO05D007446 8.9e-244 847.4 758 55.1
Lj5P206T15 Lonicera japonica HOM05D006129 ORTHO05D007446 3.7e-242 842.0 740 57.6
Cfa005424 Carpinus fangiana HOM05D006129 ORTHO05D007446 3.2e-241 839.0 788 54.2
Nitab4.5_0007303g0010 Nicotiana tabacum HOM05D006129 ORTHO05D007446 4.1e-241 838.6 786 54.1
Thecc.02G095400 Theobroma cacao HOM05D006129 ORTHO05D007446 7.0e-241 837.8 797 53.5
Peaxi162Scf00789g00530 Petunia axillaris HOM05D006129 ORTHO05D007446 1.6e-240 836.6 797 53.8
CSS0025307 Camellia sinensis var. sinensis HOM05D006129 ORTHO05D007446 2.0e-240 836.3 799 54.4
CSS0048591 Camellia sinensis var. sinensis HOM05D006129 ORTHO05D007446 2.0e-240 836.3 799 54.4
Nn4g23272 Nelumbo nucifera HOM05D006129 ORTHO05D007446 3.5e-240 835.5 797 53.8
Haze_01881 Corylus avellana HOM05D006129 ORTHO05D007446 5.9e-240 834.7 752 55.9
CiPaw.05G055300 Carya illinoinensis HOM05D006129 ORTHO05D007446 1.7e-239 833.2 786 54.8
DCAR_003623 Daucus carota HOM05D006129 ORTHO05D007446 2.1e-237 826.2 714 57.6
TWI79G0519 Tripterygium wilfordii HOM05D006129 ORTHO05D007446 1.4e-236 823.5 805 53.4
CANSAT25G2181 Cannabis sativa HOM05D006129 ORTHO05D007446 2.3e-236 822.8 746 53.9
COL.COLO4_11724 Corchorus olitorius HOM05D006129 ORTHO05D007446 2.0e-235 819.7 718 55.7
TWI31G0609 Tripterygium wilfordii HOM05D006129 ORTHO05D007446 2.9e-234 815.8 776 53.4
Dinv23594 Davidia involucrata HOM05D006129 ORTHO05D007446 4.9e-234 815.1 772 55.2
Cpa.g.sc62.53 Carica papaya HOM05D006129 ORTHO05D007446 1.4e-233 813.5 779 52.8
Atru.BG.82.p Acer truncatum HOM05D006129 ORTHO05D007446 5.4e-233 811.6 663 57.6
Aqoxy3G03484 Aquilegia oxysepala HOM05D006129 ORTHO05D007446 7.0e-233 811.2 764 53.4
RcHm_v2.0_Chr6g0259211 Rosa chinensis HOM05D006129 ORTHO05D007446 1.6e-232 810.1 774 52.8
Nitab4.5_0001453g0090 Nicotiana tabacum HOM05D006129 ORTHO05D007446 1.0e-231 807.4 814 51.7
Solyc11g066850.3 Solanum lycopersicum HOM05D006129 ORTHO05D007446 3.9e-231 805.4 704 55.8
CAN.G644.34 Capsicum annuum HOM05D006129 ORTHO05D007446 8.6e-231 804.3 706 56.2
Gohir.D01G006000 Gossypium hirsutum HOM05D006129 ORTHO05D007446 8.6e-231 804.3 759 53.9
Potri.009G106800 Populus trichocarpa HOM05D006129 ORTHO05D007446 8.6e-231 804.3 817 51.2
TAR371G0476 Trochodendron aralioides HOM05D006129 ORTHO05D007446 1.5e-230 803.5 699 57.2
Gohir.A01G005900 Gossypium hirsutum HOM05D006129 ORTHO05D007446 1.9e-230 803.1 757 53.6
vmacro02172 Vaccinium macrocarpon HOM05D006129 ORTHO05D007446 2.5e-230 802.7 793 52.8
MELO3C026699.2 Cucumis melo HOM05D006129 ORTHO05D007446 3.3e-230 802.4 773 52.3
Gorai.002G007000 Gossypium raimondii HOM05D006129 ORTHO05D007446 4.3e-230 802.0 771 53.4
MD10G1089000 Malus domestica HOM05D006129 ORTHO05D007446 3.6e-229 798.9 767 52.0
Manes.17G094600 Manihot esculenta HOM05D006129 ORTHO05D007446 1.4e-228 797.0 801 51.7
Lj2g0010354 Lotus japonicus HOM05D006129 ORTHO05D007446 1.8e-228 796.6 745 54.5
Rhsim11G0169300 Rhododendron simsii HOM05D006129 ORTHO05D007446 1.8e-228 796.6 715 55.8
Ciclev10027854m.g Citrus clementina HOM05D006129 ORTHO05D007446 3.1e-228 795.8 755 52.2
CsaV3_3G028800 Cucumis sativus L. HOM05D006129 ORTHO05D007446 2.9e-226 789.3 782 51.8
Lalb_Chr10g0095451 Lupinus albus HOM05D006129 ORTHO05D007446 1.4e-225 786.9 778 51.8
ClCG07G001810 Citrullus lanatus HOM05D006129 ORTHO05D007446 1.9e-225 786.6 788 51.6
Sed0004701 Sechium edule HOM05D006129 ORTHO05D007446 3.2e-225 785.8 764 51.2
FAN27G0179 Fragaria x ananassa HOM05D006129 ORTHO05D007446 9.2e-225 784.3 715 54.3
FvH4_2g06900 Fragaria vesca HOM05D006129 ORTHO05D007446 1.3e-223 780.4 688 54.5
PGR042G1055 Punica granatum HOM05D006129 ORTHO05D007446 8.6e-223 777.7 798 51.3
FAN24G2628 Fragaria x ananassa HOM05D006129 ORTHO05D007446 2.5e-222 776.2 738 52.2
Medtr1g026035 Medicago truncatula HOM05D006129 ORTHO05D007446 4.3e-222 775.4 697 53.7
ECA234G4125 Erigeron canadensis HOM05D006129 ORTHO05D007446 7.3e-222 774.6 741 53.0
Sc08g0000140 Simmondsia chinensis HOM05D006129 ORTHO05D007446 2.8e-221 772.7 706 53.8
FAN15G2181 Fragaria x ananassa HOM05D006129 ORTHO05D007446 3.1e-220 769.2 700 54.1
Ca_13480_v3 Cicer arietinum L. HOM05D006129 ORTHO05D007446 2.0e-219 766.5 785 50.2
Eucgr.L01320 Eucalyptus grandis HOM05D006129 ORTHO05D007446 2.9e-218 762.7 765 53.1
Lsat_1_v5_gn_5_113460 Lactuca sativa HOM05D006129 ORTHO05D007446 8.4e-218 761.1 786 50.1
Prupe.8G116000 Prunus persica HOM05D006129 ORTHO05D007446 2.1e-216 756.5 782 49.7
Glyma.20G009700 Glycine max HOM05D006129 ORTHO05D007446 3.5e-216 755.7 685 54.2
HanXRQChr10g0303221 Helianthus annuus HOM05D006129 ORTHO05D007446 1.0e-215 754.2 718 52.5
Glyma.07G178800 Glycine max HOM05D006129 ORTHO05D007446 6.6e-215 751.5 695 53.1
Sp3g29130 Schrenkiella parvula HOM05D006129 ORTHO05D007446 6.6e-215 751.5 673 53.2
THA.LOC104807348 Tarenaya hassleriana HOM05D006129 ORTHO05D007446 1.5e-214 750.4 686 53.8
TPR.G26422 Trifolium pratense HOM05D006129 ORTHO05D007446 1.4e-212 743.8 762 50.4
CARHR106180 Cardamine hirsuta HOM05D006129 ORTHO05D007446 1.8e-212 743.4 705 51.6
PGSC0003DMG400026525 Solanum tuberosum HOM05D006129 ORTHO05D007446 3.1e-212 742.7 661 55.5
Sopen11g026560 Solanum pennellii HOM05D006129 ORTHO05D007446 6.9e-212 741.5 667 55.0
Thhalv10022548m.g Eutrema salsugineum HOM05D006129 ORTHO05D007446 2.0e-211 740.0 696 52.2
Actinidia12976 Actinidia chinensis HOM05D006129 ORTHO05D007446 1.7e-210 736.9 702 53.1
Phvul.002G308800 Phaseolus vulgaris HOM05D006129 ORTHO05D007446 4.9e-210 735.3 665 52.8
A07p04960 Brassica napus HOM05D006129 ORTHO05D007446 1.1e-209 734.2 769 48.6
VMungo0464G0688 Vigna mungo HOM05D006129 ORTHO05D007446 1.9e-209 733.4 745 48.9
AL3G47590 Arabidopsis lyrata HOM05D006129 ORTHO05D007446 9.3e-209 731.1 671 52.2
AUR62011424 Chenopodium quinoa HOM05D006129 ORTHO05D007446 1.0e-207 727.6 746 49.1
Carub.0003s2972 Capsella rubella HOM05D006129 ORTHO05D007446 1.7e-207 726.9 664 52.6
arahy.Tifrunner.gnm1.ann1.769PPM Arachis hypogaea HOM05D006129 ORTHO05D007446 3.0e-207 726.1 758 50.0
BcaB03g16332 Brassica carinata HOM05D006129 ORTHO05D007446 5.1e-207 725.3 680 51.8
BcaC06g36090 Brassica carinata HOM05D006129 ORTHO05D007446 1.9e-206 723.4 763 47.7
C07p07940 Brassica napus HOM05D006129 ORTHO05D007446 1.9e-206 723.4 763 47.7
BolC7t41212H Brassica oleracea HOM05D006129 ORTHO05D007446 1.9e-206 723.4 763 47.7
AT2G15820 Arabidopsis thaliana HOM05D006129 ORTHO05D007446 5.6e-206 721.8 698 50.7
BraA07t28289Z Brassica rapa HOM05D006129 ORTHO05D007446 5.6e-206 721.8 769 47.9
EL10Ac9g21818 Beta vulgaris HOM05D006129 ORTHO05D007446 2.8e-205 719.5 779 47.4
Os02g0702000 Oryza sativa ssp. japonica HOM05D006129 ORTHO05D007446 4.5e-203 712.2 691 51.5
Zm00001eb251880 Zea mays HOM05D006129 ORTHO05D007446 5.8e-203 711.8 764 48.3
Aa31LG8G13380 Aethionema arabicum HOM05D006129 ORTHO05D007446 1.9e-201 706.8 666 51.5
ATR0665G475 Amborella trichopoda HOM05D006129 ORTHO05D007446 4.0e-196 689.1 704 49.4
Ah.01g006750 Amaranthus hybridus HOM05D006129 ORTHO05D007446 1.2e-195 687.6 808 44.4
AUR62016636 Chenopodium quinoa HOM05D006129 ORTHO05D007446 1.2e-192 677.6 617 52.8
Sabra09G0081600 Salix brachista HOM05D006129 ORTHO05D007446 4.3e-190 669.1 572 57.3
HPP92_022045 Vanilla planifolia HOM05D006129 ORTHO05D007446 2.4e-188 663.3 802 45.3
FAN20G2787 Fragaria x ananassa HOM05D006129 ORTHO05D007446 1.8e-180 637.1 626 51.8
TAR629G1168 Trochodendron aralioides HOM05D006129 ORTHO05D007446 1.4e-167 594.3 554 54.5
Medtr0381s0010 Medicago truncatula HOM05D006129 ORTHO05D007446 6.7e-167 592.0 614 48.7
SEGI_31419 Sequoiadendron giganteum HOM05D006129 ORTHO05D007446 2.1e-160 570.5 689 41.7
CDE04G1903 Ceratophyllum demersum HOM05D006129 ORTHO05D007446 1.0e-154 551.6 714 41.9
Eucgr.G01504 Eucalyptus grandis HOM05D006129 ORTHO05D007446 3.8e-154 549.7 784 42.2
Eucgr.L00820 Eucalyptus grandis HOM05D006129 ORTHO05D007446 3.2e-153 546.6 557 52.2
Cc02_g18440 Coffea canephora HOM05D006129 ORTHO05D007446 6.3e-133 479.2 474 51.5
Psat6g001360 Pisum sativum HOM05D006129 ORTHO05D007446 4.1e-132 476.5 670 39.0
Hund00318 Selenicereus undatus HOM05D006129 ORTHO05D007446 5.8e-126 456.1 420 53.1
Atru.chr5.2887 Acer truncatum HOM05D006129 ORTHO05D007446 1.1e-108 398.7 522 42.9
TAR371G0992 Trochodendron aralioides HOM05D006129 ORTHO05D007446 3.0e-98 364.0 511 41.7
Atru.chr5.2823 Acer truncatum HOM05D006129 ORTHO05D007446 2.2e-93 347.8 492 41.1
TAR371G0058 Trochodendron aralioides HOM05D006129 ORTHO05D007446 4.6e-91 340.1 351 52.1
QL11p038542 Quercus lobata HOM05D006129 ORTHO05D007446 6.6e-90 336.3 305 57.4
Pp3c25_10050 Physcomitrium patens HOM05D006129 ORTHO05D007446 2.1e-80 304.7 666 30.3
Atru.chr5.2881 Acer truncatum HOM05D006129 ORTHO05D007446 4.9e-77 293.5 256 54.3
Atru.chr5.2826 Acer truncatum HOM05D006129 ORTHO05D007446 2.8e-72 277.7 387 43.7
SMO356G0628 Selaginella moellendorffii HOM05D006129 ORTHO05D007446 2.1e-67 261.5 678 26.8
AagrBONN_evm.TU.Sc2ySwM_344.1734 Anthoceros agrestis HOM05D006129 ORTHO05D007446 9.0e-63 246.1 663 27.9
Mapoly0036s0055 Marchantia polymorpha HOM05D006129 ORTHO05D007446 4.6e-59 233.8 665 26.5
TAR629G1760 Trochodendron aralioides HOM05D006129 ORTHO05D007446 3.6e-51 207.6 197 55.3
AagrBONN_evm.TU.Sc2ySwM_344.5085 Anthoceros agrestis HOM05D006129 ORTHO05D007446 2.5e-44 184.9 694 22.9
Cc02_g18430 Coffea canephora HOM05D006129 ORTHO05D007446 2.3e-42 178.3 202 51.0
arahy.Tifrunner.gnm1.ann1.SUMB0F Arachis hypogaea HOM05D006129 ORTHO05D007446 6.7e-42 176.8 175 53.7
Pp3c16_23700 Physcomitrium patens HOM05D006129 ORTHO05D007446 9.7e-33 146.4 705 23.0
QL11p038477 Quercus lobata HOM05D006129 ORTHO05D007446 1.7e-24 119.0 70 70.0
Atru.chr5.2882 Acer truncatum HOM05D006129 ORTHO05D007446 2.8e-24 118.2 200 37.0
Atru.chr5.2820 Acer truncatum HOM05D006129 ORTHO05D007446 1.4e-15 89.4 91 50.5
RcHm_v2.0_Chr6g0302241 Rosa chinensis HOM05D006129 ORTHO05D007446 5.4e-15 87.4 61 60.7
RcHm_v2.0_Chr1g0376021 Rosa chinensis HOM05D006129 ORTHO05D007446 3.9e-13 81.3 51 68.6
RcHm_v2.0_Chr2g0152801 Rosa chinensis HOM05D006129 ORTHO05D007446 7.3e-12 77.0 52 67.3
CBR_g19584 Chara braunii HOM05D006129 ORTHO05D007446 1.5e-09 69.3 594 20.4
Lalb_Chr12g0200631 Lupinus albus HOM05D001779 ORTHO05D001753 5.8e-09 67.4 372 20.2
Pp3c2_12230 Physcomitrium patens HOM05D000001 ORTHO05D000003 1.7e-08 65.9 313 21.1
MBI11_g44567_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 2.2e-08 65.5 316 22.5
Sopen01g021730 Solanum pennellii HOM05D001779 ORTHO05D001753 2.2e-08 65.5 374 19.5
Actinidia31803 Actinidia chinensis HOM05D000001 ORTHO05D010013 1.9e-07 62.4 172 29.1
Prupe.3G264700 Prunus persica HOM05D000001 ORTHO05D009664 1.9e-07 62.4 172 27.3
Thecc.09G316700 Theobroma cacao HOM05D000001 ORTHO05D013582 1.9e-07 62.4 303 23.1
AagrBONN_evm.TU.Sc2ySwM_228.1156 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.4e-07 62.0 365 22.7
Eucgr.J00110 Eucalyptus grandis HOM05D000001 ORTHO05D000003 2.4e-07 62.0 375 22.4
FAN02G2476 Fragaria x ananassa HOM05D000001 ORTHO05D009664 2.4e-07 62.0 170 29.4
Sc02g0003170 Simmondsia chinensis HOM05D002785 ORTHO05D003042 3.2e-07 61.6 201 22.9
GSVIVG01021752001 Vitis vinifera HOM05D002785 ORTHO05D003042 4.1e-07 61.2 198 24.2
CANSAT01G2728 Cannabis sativa HOM05D000001 ORTHO05D000003 5.4e-07 60.8 354 21.5
Ciclev10014133m.g Citrus clementina HOM05D002785 ORTHO05D003042 5.4e-07 60.8 212 22.6
FAN05G5079 Fragaria x ananassa HOM05D000001 ORTHO05D009664 5.4e-07 60.8 171 29.8
MD09G1053600 Malus domestica HOM05D000001 ORTHO05D009664 5.4e-07 60.8 171 27.5
Eucgr.A02655 Eucalyptus grandis HOM05D000001 ORTHO05D000003 7.0e-07 60.5 235 26.8
Lsat_1_v5_gn_6_71420 Lactuca sativa HOM05D001779 ORTHO05D001753 7.0e-07 60.5 391 20.7
RcHm_v2.0_Chr2g0167471 Rosa chinensis HOM05D000001 ORTHO05D009664 9.2e-07 60.1 170 30.0
TAR369G0350 Trochodendron aralioides HOM05D000001 ORTHO05D000003 9.2e-07 60.1 202 25.7
Atru.chr3.2242 Acer truncatum HOM05D002785 ORTHO05D003042 1.2e-06 59.7 198 24.7
TPR.G32744 Trifolium pratense HOM05D000001 ORTHO05D010013 1.6e-06 59.3 172 28.5
HanXRQChr16g0527211 Helianthus annuus HOM05D000001 ORTHO05D000003 2.0e-06 58.9 381 20.5
AagrBONN_evm.TU.Sc2ySwM_368.2803 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.7e-06 58.5 291 22.0
Sp1g26510 Schrenkiella parvula HOM05D002785 ORTHO05D003042 2.7e-06 58.5 208 21.2
Actinidia34388 Actinidia chinensis HOM05D000001 ORTHO05D010467 3.5e-06 58.2 309 24.3
Os03g0635000 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D006238 3.5e-06 58.2 169 29.0
AUR62036048 Chenopodium quinoa HOM05D000001 ORTHO05D006238 4.6e-06 57.8 179 26.8
Sopen02g018700 Solanum pennellii HOM05D002785 ORTHO05D003042 4.6e-06 57.8 212 22.2
Duzib168G0340 Durio zibethinus HOM05D000001 ORTHO05D013582 6.0e-06 57.4 302 21.5
FAN03G2370 Fragaria x ananassa HOM05D000001 ORTHO05D010013 7.8e-06 57.0 172 26.7
FAN09G1796 Fragaria x ananassa HOM05D000001 ORTHO05D009664 7.8e-06 57.0 170 28.2
FAN14G1136 Fragaria x ananassa HOM05D000001 ORTHO05D009664 7.8e-06 57.0 170 28.2


User provided reference genes

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